Wall clock time and date at job start Tue Mar 31 2020 14:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47213 * 2 1 4 4 C 1.50701 * 109.47060 * 240.00506 * 2 1 3 5 5 H 1.07998 * 120.00187 * 239.99657 * 4 2 1 6 6 C 1.37883 * 120.00170 * 59.99933 * 4 2 1 7 7 N 1.31514 * 119.99580 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00087 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47082 * 60.00189 * 8 6 4 10 10 H 1.48496 * 109.46830 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47579 * 300.00034 * 8 6 4 12 12 N 1.46499 * 109.47466 * 120.00525 * 2 1 3 13 13 C 1.34774 * 120.00103 * 275.00230 * 12 2 1 14 14 O 1.21588 * 119.99939 * 359.97438 * 13 12 2 15 15 N 1.34771 * 120.00336 * 179.97438 * 13 12 2 16 16 C 1.39939 * 120.00525 * 174.67395 * 15 13 12 17 17 C 1.38939 * 120.03482 * 326.67107 * 16 15 13 18 18 C 1.38140 * 120.06990 * 179.73994 * 17 16 15 19 19 C 1.38175 * 120.13790 * 0.50380 * 18 17 16 20 20 C 1.38897 * 120.07088 * 359.76815 * 19 18 17 21 21 N 1.39943 * 120.03749 * 179.97438 * 20 19 18 22 22 C 1.47059 * 125.40833 * 5.47062 * 21 20 19 23 23 C 1.54099 * 103.86191 * 179.86723 * 22 21 20 24 24 N 1.47053 * 103.86333 * 0.36818 * 23 22 21 25 25 C 1.33941 * 125.41543 * 185.76392 * 21 20 19 26 26 O 1.21598 * 123.03782 * 0.02974 * 25 21 20 27 27 C 1.38726 * 120.03721 * 146.93316 * 16 15 13 28 28 H 1.08994 * 109.47277 * 59.99753 * 1 2 3 29 29 H 1.08999 * 109.46997 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46785 * 299.99195 * 1 2 3 31 31 H 0.97000 * 120.00075 * 180.02562 * 7 6 4 32 32 H 0.97000 * 120.00277 * 94.99864 * 12 2 1 33 33 H 0.97003 * 120.00154 * 354.67769 * 15 13 12 34 34 H 1.07998 * 119.96500 * 359.96392 * 17 16 15 35 35 H 1.07999 * 119.93157 * 180.22737 * 18 17 16 36 36 H 1.08002 * 119.96549 * 179.74370 * 19 18 17 37 37 H 1.09002 * 110.54539 * 298.58463 * 22 21 20 38 38 H 1.08994 * 110.55093 * 61.39346 * 22 21 20 39 39 H 1.09008 * 110.75585 * 241.67249 * 23 22 21 40 40 H 1.08999 * 110.46588 * 118.92096 * 23 22 21 41 41 H 0.96997 * 125.40974 * 179.75541 * 24 23 22 42 42 H 1.07999 * 120.06580 * 359.97438 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1316 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8304 -2.6033 8 14 2.3224 -1.1192 -4.0081 9 1 1.8280 -2.5195 -4.0084 10 1 1.8268 -0.4195 -5.2204 11 1 3.8074 -1.1186 -4.0080 12 7 2.0184 -0.6907 1.1961 13 6 2.1471 -0.0185 2.3571 14 8 1.8583 1.1613 2.4117 15 7 2.5959 -0.6540 3.4576 16 6 2.8357 0.0667 4.6330 17 6 3.2909 1.3775 4.5643 18 6 3.5227 2.0913 5.7241 19 6 3.3127 1.5011 6.9557 20 6 2.8631 0.1891 7.0311 21 7 2.6511 -0.4081 8.2788 22 6 2.7557 0.2727 9.5781 23 6 2.4249 -0.8313 10.6011 24 7 2.1780 -2.0192 9.7701 25 6 2.3262 -1.6919 8.4797 26 8 2.1796 -2.4884 7.5726 27 6 2.6243 -0.5288 5.8679 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 0.7088 1.1617 -3.4843 32 1 2.2491 -1.6318 1.1525 33 1 2.7528 -1.6110 3.4350 34 1 3.4603 1.8401 3.6033 35 1 3.8731 3.1114 5.6681 36 1 3.4988 2.0604 7.8607 37 1 3.7668 0.6494 9.7323 38 1 2.0301 1.0833 9.6448 39 1 1.5340 -0.5731 11.1737 40 1 3.2711 -0.9996 11.2672 41 1 1.9450 -2.8997 10.1034 42 1 2.2741 -1.5490 5.9239 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263776353.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:24 Heat of formation + Delta-G solvation = -29.623462 kcal Electronic energy + Delta-G solvation = -25902.476063 eV Core-core repulsion = 22075.305519 eV Total energy + Delta-G solvation = -3827.170544 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.50594 -41.49308 -39.58737 -37.69598 -36.98805 -35.92905 -34.89310 -34.23843 -31.51607 -30.91403 -29.66955 -29.56317 -27.34402 -24.87156 -24.58889 -23.65906 -22.40674 -21.94368 -21.11055 -19.80034 -19.23106 -18.27228 -17.91769 -17.66713 -17.45917 -17.14611 -16.63073 -16.33012 -15.94332 -15.56285 -15.37701 -15.16446 -14.85382 -14.66828 -14.48852 -14.38222 -14.32890 -13.79723 -13.29719 -13.16068 -13.01133 -12.89756 -12.84150 -12.73843 -12.65759 -12.27997 -12.14717 -11.68756 -11.21731 -11.12891 -11.11024 -10.83443 -10.60501 -10.20351 -9.87312 -9.23917 -8.72648 -8.17798 -6.35238 0.32811 0.40406 1.34036 1.45055 1.47644 1.55227 1.77404 1.93386 2.19340 2.42094 2.90381 2.94328 3.12417 3.39930 3.48763 3.81655 4.15985 4.16204 4.28227 4.33967 4.45723 4.57513 4.66065 4.72582 4.77649 4.89150 4.91791 4.93362 5.07602 5.25904 5.36832 5.42716 5.46360 5.53434 5.58957 5.65103 5.69510 5.84264 6.07444 6.07820 6.16932 6.24574 6.40733 6.71470 7.17849 7.32881 7.38462 7.63518 8.88726 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.029324 B = 0.002442 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.618142 B =11463.500918 C =11959.694375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.289 3.711 3 H 0.002 0.998 4 C -0.548 4.548 5 H 0.073 0.927 6 C 0.015 3.985 7 N -0.916 5.916 8 Si 0.975 3.025 9 H -0.265 1.265 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.715 5.715 13 C 0.695 3.305 14 O -0.619 6.619 15 N -0.680 5.680 16 C 0.185 3.815 17 C -0.172 4.172 18 C -0.066 4.066 19 C -0.164 4.164 20 C 0.201 3.799 21 N -0.572 5.572 22 C 0.075 3.925 23 C 0.093 3.907 24 N -0.727 5.727 25 C 0.682 3.318 26 O -0.618 6.618 27 C -0.205 4.205 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.010 0.990 31 H 0.267 0.733 32 H 0.402 0.598 33 H 0.417 0.583 34 H 0.108 0.892 35 H 0.157 0.843 36 H 0.168 0.832 37 H 0.116 0.884 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.116 0.884 41 H 0.440 0.560 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.026 -2.080 30.986 31.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.186 3.814 3 H 0.020 0.980 4 C -0.586 4.586 5 H 0.091 0.909 6 C -0.185 4.185 7 N -0.554 5.554 8 Si 0.800 3.200 9 H -0.190 1.190 10 H -0.210 1.210 11 H -0.196 1.196 12 N -0.367 5.367 13 C 0.395 3.605 14 O -0.500 6.500 15 N -0.328 5.328 16 C 0.089 3.911 17 C -0.194 4.194 18 C -0.085 4.085 19 C -0.185 4.185 20 C 0.105 3.895 21 N -0.298 5.298 22 C -0.046 4.046 23 C -0.030 4.030 24 N -0.389 5.389 25 C 0.383 3.617 26 O -0.499 6.499 27 C -0.228 4.228 28 H 0.089 0.911 29 H 0.058 0.942 30 H 0.029 0.971 31 H 0.076 0.924 32 H 0.237 0.763 33 H 0.254 0.746 34 H 0.126 0.874 35 H 0.174 0.826 36 H 0.185 0.815 37 H 0.134 0.866 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.134 0.866 41 H 0.283 0.717 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.598 -1.282 30.323 30.862 hybrid contribution 0.004 -1.560 -1.205 1.971 sum 5.602 -2.842 29.117 29.787 Atomic orbital electron populations 1.21933 0.98457 0.99391 0.99588 1.18278 0.90868 0.91776 0.80498 0.97971 1.21482 1.32819 1.13687 0.90661 0.90924 1.25808 0.94848 0.95612 1.02280 1.70046 1.36812 1.23797 1.24773 0.85350 0.78612 0.78620 0.77447 1.18974 1.20993 1.19585 1.45501 1.68907 1.14044 1.08291 1.16193 0.78288 0.85067 0.80950 1.90850 1.58142 1.16089 1.84873 1.42580 1.69095 1.12068 1.09093 1.17492 0.96406 0.92535 0.84686 1.21208 1.03568 0.94524 1.00114 1.21075 0.96723 1.00311 0.90347 1.20904 1.05480 0.92659 0.99481 1.17168 0.97562 0.92634 0.82132 1.44555 1.69103 1.09814 1.06329 1.23065 1.06083 0.97149 0.78299 1.22753 1.05038 0.81924 0.93289 1.45116 1.74487 1.14919 1.04339 1.16301 0.78281 0.82404 0.84755 1.90846 1.59797 1.53745 1.45546 1.21100 1.08489 1.03341 0.89893 0.91122 0.94246 0.97122 0.92430 0.76280 0.74626 0.87370 0.82560 0.81491 0.86597 0.87209 0.86955 0.86611 0.71673 0.84017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.17 9.26 71.98 0.67 -6.51 16 2 C 0.29 15.69 2.56 44.24 0.11 15.80 16 3 H 0.00 0.15 7.58 -2.39 -0.02 0.13 16 4 C -0.55 -29.88 8.73 25.60 0.22 -29.66 16 5 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 6 C 0.01 0.81 5.30 84.66 0.45 1.26 16 7 N -0.92 -53.43 11.32 21.45 0.24 -53.19 16 8 Si 0.98 42.84 29.54 68.60 2.03 44.87 16 9 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 12 N -0.71 -32.17 5.07 -461.42 -2.34 -34.51 16 13 C 0.69 31.27 8.26 179.06 1.48 32.75 16 14 O -0.62 -32.72 13.69 -3.99 -0.05 -32.78 16 15 N -0.68 -24.74 5.35 -317.24 -1.70 -26.44 16 16 C 0.19 6.53 6.28 38.13 0.24 6.77 16 17 C -0.17 -5.93 8.65 22.41 0.19 -5.73 16 18 C -0.07 -1.61 10.03 22.23 0.22 -1.39 16 19 C -0.16 -3.26 9.49 22.41 0.21 -3.05 16 20 C 0.20 5.02 6.62 38.13 0.25 5.27 16 21 N -0.57 -10.94 3.16 -646.81 -2.04 -12.98 16 22 C 0.07 0.45 6.48 86.64 0.56 1.01 16 23 C 0.09 0.22 8.06 86.65 0.70 0.91 16 24 N -0.73 -8.48 6.37 -477.33 -3.04 -11.53 16 25 C 0.68 15.58 8.52 179.57 1.53 17.11 16 26 O -0.62 -20.39 14.75 -4.03 -0.06 -20.45 16 27 C -0.20 -6.57 9.20 22.51 0.21 -6.36 16 28 H 0.07 4.05 6.07 -2.39 -0.01 4.03 16 29 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 32 H 0.40 15.35 8.56 -92.71 -0.79 14.55 16 33 H 0.42 12.51 8.83 -92.71 -0.82 11.70 16 34 H 0.11 4.39 6.41 -2.91 -0.02 4.37 16 35 H 0.16 2.87 8.06 -2.91 -0.02 2.85 16 36 H 0.17 1.75 7.29 -2.91 -0.02 1.73 16 37 H 0.12 0.17 8.12 -2.39 -0.02 0.16 16 38 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.11 -0.22 8.14 -2.38 -0.02 -0.24 16 40 H 0.12 -0.32 8.14 -2.39 -0.02 -0.34 16 41 H 0.44 3.72 8.96 -92.71 -0.83 2.89 16 42 H 0.14 5.03 5.28 -2.91 -0.02 5.01 16 Total: -1.00 -83.30 349.92 -1.26 -84.56 By element: Atomic # 1 Polarization: 35.59 SS G_CDS: -1.34 Total: 34.25 kcal Atomic # 6 Polarization: 21.14 SS G_CDS: 7.05 Total: 28.19 kcal Atomic # 7 Polarization: -129.76 SS G_CDS: -8.88 Total: -138.64 kcal Atomic # 8 Polarization: -53.11 SS G_CDS: -0.11 Total: -53.22 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -83.30 -1.26 -84.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263776353.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.934 kcal (2) G-P(sol) polarization free energy of solvation -83.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds