Wall clock time and date at job start Tue Mar 31 2020 14:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46741 * 2 1 4 4 C 1.52997 * 109.47236 * 239.99889 * 2 1 3 5 5 C 1.50701 * 109.47212 * 64.99766 * 4 2 1 6 6 O 1.21280 * 119.99781 * 0.02562 * 5 4 2 7 7 N 1.34780 * 119.99795 * 179.97438 * 5 4 2 8 8 C 1.46497 * 119.99566 * 180.02562 * 7 5 4 9 9 C 1.50707 * 109.47162 * 90.00410 * 8 7 5 10 10 H 1.07998 * 119.99576 * 359.97438 * 9 8 7 11 11 C 1.37873 * 120.00057 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99930 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 119.99982 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47241 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47303 * 119.99759 * 13 11 9 16 16 H 1.48495 * 109.47340 * 239.99921 * 13 11 9 17 17 C 1.46490 * 120.00111 * 0.02562 * 7 5 4 18 18 C 1.53001 * 109.47305 * 89.99580 * 17 7 5 19 19 C 1.47208 * 109.47132 * 179.97438 * 18 17 7 20 20 N 6.74676 * 103.74609 * 219.86409 * 2 1 3 21 21 C 1.50699 * 109.47110 * 119.99564 * 2 1 3 22 22 C 1.38219 * 120.01090 * 59.72689 * 21 2 1 23 23 C 1.38226 * 120.02156 * 179.71873 * 22 21 2 24 24 C 1.38264 * 120.05545 * 0.55956 * 23 22 21 25 25 C 1.38176 * 120.02230 * 359.71929 * 24 23 22 26 26 C 1.38434 * 120.01506 * 240.00299 * 21 2 1 27 27 F 1.35102 * 120.02608 * 0.02562 * 26 21 2 28 28 H 1.09000 * 109.47403 * 300.00135 * 1 2 3 29 29 H 1.09001 * 109.46917 * 60.00677 * 1 2 3 30 30 H 1.09004 * 109.46741 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47153 * 304.99767 * 4 2 1 32 32 H 1.09001 * 109.46832 * 184.99958 * 4 2 1 33 33 H 1.09000 * 109.47018 * 209.99971 * 8 7 5 34 34 H 1.09000 * 109.47828 * 330.00266 * 8 7 5 35 35 H 0.97001 * 119.99961 * 180.02562 * 12 11 9 36 36 H 1.09006 * 109.47028 * 209.99878 * 17 7 5 37 37 H 1.09002 * 109.47109 * 329.99455 * 17 7 5 38 38 H 1.09001 * 109.47263 * 299.99631 * 18 17 7 39 39 H 1.08996 * 109.47107 * 60.00334 * 18 17 7 40 40 H 1.08001 * 119.99062 * 0.02562 * 22 21 2 41 41 H 1.08007 * 119.96977 * 180.27941 * 23 22 21 42 42 H 1.08003 * 119.98960 * 179.74529 * 24 23 22 43 43 H 1.07994 * 120.01400 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 8 1.0117 1.0873 -2.3633 7 7 1.9854 -0.3915 -3.7001 8 6 1.5983 0.3653 -4.8932 9 6 2.6797 1.3594 -5.2303 10 1 3.5663 1.4215 -4.6168 11 6 2.5370 2.1896 -6.3218 12 7 1.4574 2.1136 -7.0690 13 14 3.8776 3.4213 -6.7400 14 1 4.9801 3.3077 -5.7516 15 1 4.4013 3.1400 -8.1008 16 1 3.3172 4.7958 -6.6997 17 6 2.7464 -1.6358 -3.8369 18 6 1.7789 -2.8148 -3.9576 19 6 2.5436 -4.0650 -4.0956 20 7 3.1332 -5.0303 -4.2006 21 6 2.0324 -0.7103 1.2305 22 6 1.6939 -2.0319 1.4524 23 6 2.1593 -2.6854 2.5780 24 6 2.9542 -2.0147 3.4891 25 6 3.2891 -0.6918 3.2722 26 6 2.8282 -0.0378 2.1419 27 9 3.1546 1.2559 1.9292 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.6055 -1.7198 -1.2951 32 1 3.1264 -0.7994 -1.2055 33 1 1.4613 -0.3200 -5.7296 34 1 0.6652 0.8948 -4.7008 35 1 1.3572 2.6975 -7.8372 36 1 3.3696 -1.5842 -4.7297 37 1 3.3789 -1.7731 -2.9598 38 1 1.1557 -2.8664 -3.0647 39 1 1.1465 -2.6775 -4.8347 40 1 1.0697 -2.5557 0.7436 41 1 1.8981 -3.7194 2.7483 42 1 3.3139 -2.5251 4.3703 43 1 3.9103 -0.1682 3.9837 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263787559.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:14 Heat of formation + Delta-G solvation = -41.868846 kcal Electronic energy + Delta-G solvation = -26278.149638 eV Core-core repulsion = 22430.528133 eV Total energy + Delta-G solvation = -3847.621506 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.93819 -39.87038 -38.96362 -36.91750 -35.56870 -34.80983 -32.87703 -30.85335 -30.72273 -30.00537 -28.38246 -26.59696 -24.14719 -23.95659 -22.93242 -22.44830 -20.30346 -18.44759 -17.82907 -17.56875 -16.75909 -16.53790 -16.36944 -15.70046 -15.64222 -15.40172 -14.95567 -14.69578 -14.32574 -14.27481 -13.98312 -13.60023 -13.33862 -13.17391 -13.09518 -12.76615 -12.47209 -12.41195 -12.29452 -12.21545 -11.97977 -11.82542 -11.46211 -11.29856 -11.18199 -10.98518 -10.83232 -10.80041 -10.65584 -10.59461 -10.18757 -9.67605 -9.15307 -8.94261 -8.76356 -8.47583 -7.83414 -6.09096 -4.13431 0.99204 1.01832 2.72024 2.80190 3.28241 3.29572 3.36835 3.39613 3.41075 3.65267 4.11949 4.18203 4.41370 4.51536 4.58054 4.74587 4.95213 4.99471 5.05047 5.10484 5.15344 5.19436 5.23285 5.27719 5.42393 5.50944 5.66747 5.75960 5.77370 5.83097 5.87066 5.97467 6.05227 6.07301 6.14036 6.19655 6.43843 6.54860 6.73353 6.94003 7.36213 7.43629 7.56433 7.87408 8.17478 8.26737 8.84474 8.99669 9.52381 10.99027 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.011285 B = 0.003849 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.606421 B = 7272.675704 C = 8784.346085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.040 4.040 3 H 0.093 0.907 4 C -0.135 4.135 5 C 0.508 3.492 6 O -0.528 6.528 7 N -0.598 5.598 8 C 0.244 3.756 9 C -0.528 4.528 10 H 0.058 0.942 11 C 0.062 3.938 12 N -0.894 5.894 13 Si 0.896 3.104 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.283 1.283 17 C 0.117 3.883 18 C -0.050 4.050 19 C 0.217 3.783 20 N -0.446 5.446 21 C -0.103 4.103 22 C -0.088 4.088 23 C -0.130 4.130 24 C -0.100 4.100 25 C -0.154 4.154 26 C 0.101 3.899 27 F -0.135 7.135 28 H 0.050 0.950 29 H 0.087 0.913 30 H 0.049 0.951 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.034 0.966 34 H 0.047 0.953 35 H 0.263 0.737 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.106 0.894 39 H 0.117 0.883 40 H 0.132 0.868 41 H 0.127 0.873 42 H 0.129 0.871 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.198 -10.610 17.898 20.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.059 4.059 3 H 0.111 0.889 4 C -0.175 4.175 5 C 0.295 3.705 6 O -0.405 6.405 7 N -0.329 5.329 8 C 0.126 3.874 9 C -0.566 4.566 10 H 0.077 0.923 11 C -0.140 4.140 12 N -0.533 5.533 13 Si 0.724 3.276 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.209 1.209 17 C -0.009 4.009 18 C -0.092 4.092 19 C -0.101 4.101 20 N -0.123 5.123 21 C -0.104 4.104 22 C -0.106 4.106 23 C -0.148 4.148 24 C -0.118 4.118 25 C -0.173 4.173 26 C 0.081 3.919 27 F -0.114 7.114 28 H 0.069 0.931 29 H 0.106 0.894 30 H 0.068 0.932 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.112 0.888 37 H 0.094 0.906 38 H 0.124 0.876 39 H 0.135 0.865 40 H 0.150 0.850 41 H 0.145 0.855 42 H 0.147 0.853 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.262 -11.343 17.602 20.942 hybrid contribution 0.695 1.230 -0.314 1.447 sum 0.957 -10.114 17.287 20.051 Atomic orbital electron populations 1.21950 0.93208 1.01531 1.03614 1.19853 0.97127 0.99807 0.89064 0.88909 1.21828 1.02620 0.99895 0.93161 1.20280 0.80158 0.85795 0.84243 1.90660 1.39899 1.24052 1.85879 1.48220 1.54157 1.22584 1.07951 1.19343 0.97090 0.90873 0.80135 1.21462 1.04609 1.19224 1.11339 0.92348 1.24910 0.95839 0.97142 0.96085 1.69927 1.26763 1.39213 1.17370 0.86475 0.81843 0.81252 0.78059 1.19793 1.20997 1.20882 1.21298 0.92894 0.82613 1.04123 1.19907 0.97727 0.85468 1.06081 1.29114 0.93729 0.94434 0.92830 1.81203 1.09640 1.12097 1.09360 1.20085 0.98308 0.95078 0.96942 1.20942 0.98941 0.93166 0.97503 1.21199 0.98606 1.00309 0.94712 1.20972 0.97824 0.93567 0.99452 1.21140 1.02805 0.96006 0.97378 1.17631 0.98970 0.79265 0.96002 1.91513 1.90904 1.34214 1.94751 0.93087 0.89450 0.93218 0.89394 0.89290 0.94815 0.93532 0.92747 0.88835 0.90622 0.87598 0.86511 0.84996 0.85497 0.85327 0.84954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 8.74 37.16 0.32 -1.52 16 2 C -0.04 -0.52 2.19 -91.77 -0.20 -0.72 16 3 H 0.09 1.47 6.94 -51.93 -0.36 1.11 16 4 C -0.13 -1.71 3.47 -27.88 -0.10 -1.80 16 5 C 0.51 9.00 7.39 -10.98 -0.08 8.92 16 6 O -0.53 -11.66 13.55 5.56 0.08 -11.59 16 7 N -0.60 -10.66 2.46 -175.06 -0.43 -11.09 16 8 C 0.24 5.71 5.16 -5.19 -0.03 5.68 16 9 C -0.53 -14.05 9.39 -34.44 -0.32 -14.37 16 10 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 11 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 12 N -0.89 -25.44 13.29 55.43 0.74 -24.70 16 13 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 14 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 C 0.12 1.53 5.17 -4.05 -0.02 1.51 16 18 C -0.05 -0.50 6.03 -29.51 -0.18 -0.68 16 19 C 0.22 2.55 15.43 -20.76 -0.32 2.23 16 20 N -0.45 -6.42 18.54 42.15 0.78 -5.64 16 21 C -0.10 -1.17 4.79 -104.56 -0.50 -1.67 16 22 C -0.09 -0.79 8.76 -39.59 -0.35 -1.14 16 23 C -0.13 -1.02 10.04 -39.58 -0.40 -1.42 16 24 C -0.10 -0.79 10.04 -39.59 -0.40 -1.19 16 25 C -0.15 -1.47 10.03 -39.51 -0.40 -1.87 16 26 C 0.10 1.20 7.25 -39.42 -0.29 0.91 16 27 F -0.14 -1.88 16.19 2.25 0.04 -1.84 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.09 1.35 5.95 -51.93 -0.31 1.04 16 30 H 0.05 0.51 7.37 -51.93 -0.38 0.13 16 31 H 0.09 0.84 6.63 -51.93 -0.34 0.49 16 32 H 0.09 1.07 7.40 -51.93 -0.38 0.68 16 33 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 34 H 0.05 1.24 7.42 -51.93 -0.39 0.86 16 35 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 36 H 0.09 1.32 8.07 -51.93 -0.42 0.90 16 37 H 0.08 0.83 6.44 -51.93 -0.33 0.50 16 38 H 0.11 0.83 7.22 -51.93 -0.38 0.45 16 39 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.13 0.97 7.16 -52.49 -0.38 0.59 16 41 H 0.13 0.71 8.06 -52.48 -0.42 0.28 16 42 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 43 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 369.49 15.07 5.57 5.57 Total: -1.00 -32.67 369.49 -7.35 -40.02 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -5.75 Total: -1.49 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -3.35 Total: -5.52 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: 1.09 Total: -41.43 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.08 Total: -11.59 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.67 -7.35 -40.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263787559.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.850 kcal (2) G-P(sol) polarization free energy of solvation -32.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds