Wall clock time and date at job start Tue Mar 31 2020 14:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47161 * 2 1 4 4 C 1.53004 * 109.46787 * 119.99935 * 2 1 3 5 5 C 1.50700 * 109.47208 * 294.99932 * 4 2 1 6 6 O 1.21283 * 119.99803 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99675 * 180.27843 * 5 4 2 8 8 C 1.46497 * 119.99525 * 179.72583 * 7 5 4 9 9 C 1.50709 * 109.47273 * 89.99834 * 8 7 5 10 10 H 1.07999 * 119.99476 * 359.97438 * 9 8 7 11 11 C 1.37873 * 120.00210 * 179.97438 * 9 8 7 12 12 N 1.31510 * 120.00400 * 179.97438 * 11 9 8 13 13 Si 1.86811 * 119.99937 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.46951 * 89.99952 * 13 11 9 15 15 H 1.48501 * 109.46896 * 209.99905 * 13 11 9 16 16 H 1.48500 * 109.46904 * 329.99741 * 13 11 9 17 17 C 1.46496 * 120.00345 * 359.72090 * 7 5 4 18 18 C 1.53005 * 109.46942 * 90.00092 * 17 7 5 19 19 C 1.47196 * 109.47093 * 179.97438 * 18 17 7 20 20 N 6.74428 * 127.14857 * 131.13633 * 2 1 3 21 21 C 1.50696 * 109.47535 * 239.99977 * 2 1 3 22 22 C 1.38222 * 120.01312 * 300.00814 * 21 2 1 23 23 C 1.38224 * 120.02854 * 179.97438 * 22 21 2 24 24 C 1.38261 * 120.04907 * 0.02562 * 23 22 21 25 25 C 1.38178 * 120.02683 * 359.97438 * 24 23 22 26 26 C 1.38440 * 120.01695 * 119.72304 * 21 2 1 27 27 F 1.35108 * 120.02107 * 0.02562 * 26 21 2 28 28 H 1.09000 * 109.47161 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47289 * 300.00150 * 1 2 3 30 30 H 1.09004 * 109.46667 * 59.99742 * 1 2 3 31 31 H 1.09009 * 109.46730 * 174.99839 * 4 2 1 32 32 H 1.08998 * 109.46846 * 55.00383 * 4 2 1 33 33 H 1.09000 * 109.46889 * 209.99487 * 8 7 5 34 34 H 1.09001 * 109.47460 * 330.00097 * 8 7 5 35 35 H 0.97001 * 120.00447 * 180.02562 * 12 11 9 36 36 H 1.08995 * 109.47364 * 210.00706 * 17 7 5 37 37 H 1.09002 * 109.47090 * 330.00257 * 17 7 5 38 38 H 1.08998 * 109.46999 * 300.00039 * 18 17 7 39 39 H 1.08997 * 109.46656 * 60.00331 * 18 17 7 40 40 H 1.08006 * 119.98435 * 359.97438 * 22 21 2 41 41 H 1.07999 * 119.97281 * 180.02562 * 23 22 21 42 42 H 1.08002 * 119.98911 * 179.97438 * 24 23 22 43 43 H 1.08003 * 120.01234 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6412 0.0570 2.4766 6 8 1.0117 1.0875 2.3632 7 7 1.9896 -0.3888 3.6999 8 6 1.6072 0.3710 4.8926 9 6 0.2619 -0.1024 5.3799 10 1 -0.2564 -0.8901 4.8535 11 6 -0.3070 0.4701 6.4977 12 7 -1.4811 0.0574 6.9227 13 14 0.5895 1.8332 7.4079 14 1 0.1977 3.1483 6.8402 15 1 0.2280 1.7879 8.8475 16 1 2.0552 1.6467 7.2595 17 6 2.7505 -1.6331 3.8368 18 6 4.2481 -1.3212 3.8050 19 6 5.0127 -2.5714 3.9431 20 7 5.6028 -3.5364 4.0487 21 6 2.0324 -0.7104 -1.2304 22 6 1.6986 -2.0337 -1.4495 23 6 2.1588 -2.6854 -2.5782 24 6 2.9540 -2.0148 -3.4891 25 6 3.2890 -0.6919 -3.2722 26 6 2.8237 -0.0362 -2.1447 27 9 3.1463 1.2588 -1.9343 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.1263 -0.7995 1.2056 32 1 1.6053 -1.7198 1.2951 33 1 2.3511 0.2184 5.6746 34 1 1.5517 1.4312 4.6458 35 1 -1.8815 0.4605 7.7089 36 1 2.4988 -2.1106 4.7837 37 1 2.5015 -2.3037 3.0143 38 1 4.4997 -0.8438 2.8580 39 1 4.4971 -0.6507 4.6275 40 1 1.0779 -2.5586 -0.7384 41 1 1.8971 -3.7192 -2.7487 42 1 3.3134 -2.5251 -4.3705 43 1 3.9105 -0.1684 -3.9836 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263787561.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:18 Heat of formation + Delta-G solvation = -37.226866 kcal Electronic energy + Delta-G solvation = -26316.962398 eV Core-core repulsion = 22469.542184 eV Total energy + Delta-G solvation = -3847.420214 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.98389 -39.93178 -39.02983 -36.97574 -35.64780 -34.86549 -32.81042 -31.04249 -30.73547 -30.06467 -28.65977 -26.94242 -24.14677 -23.99260 -22.84382 -22.26036 -20.27543 -18.44362 -17.92293 -17.67222 -16.88450 -16.77317 -16.51352 -15.75376 -15.69189 -15.50766 -15.01502 -14.71019 -14.34546 -14.08809 -13.99669 -13.85183 -13.37993 -13.24696 -12.93902 -12.85552 -12.59002 -12.49576 -12.35464 -12.23279 -12.05434 -11.93340 -11.64610 -11.57711 -11.13238 -11.05604 -10.91900 -10.80346 -10.63568 -10.55182 -10.21801 -9.60729 -9.17228 -9.03252 -8.79353 -8.63464 -7.91352 -6.13104 -4.12674 0.97361 1.00638 2.66893 2.75628 3.21608 3.25737 3.31044 3.33706 3.37772 3.55042 4.07129 4.13346 4.35196 4.48982 4.54591 4.73604 4.90942 4.96828 4.99846 5.04527 5.11175 5.16169 5.16998 5.23373 5.37954 5.48575 5.65282 5.73645 5.76435 5.78777 5.86239 5.95559 6.01251 6.05465 6.14553 6.19566 6.42399 6.59120 6.62429 6.72401 6.86891 7.19452 7.51631 7.54881 8.07909 8.40683 8.83101 8.91196 9.46678 11.00097 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.012955 B = 0.003717 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.875248 B = 7530.759170 C = 8676.074682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.038 4.038 3 H 0.091 0.909 4 C -0.135 4.135 5 C 0.511 3.489 6 O -0.527 6.527 7 N -0.593 5.593 8 C 0.214 3.786 9 C -0.531 4.531 10 H 0.075 0.925 11 C 0.073 3.927 12 N -0.896 5.896 13 Si 0.875 3.125 14 H -0.273 1.273 15 H -0.286 1.286 16 H -0.265 1.265 17 C 0.118 3.882 18 C -0.051 4.051 19 C 0.216 3.784 20 N -0.443 5.443 21 C -0.103 4.103 22 C -0.087 4.087 23 C -0.129 4.129 24 C -0.100 4.100 25 C -0.155 4.155 26 C 0.099 3.901 27 F -0.137 7.137 28 H 0.050 0.950 29 H 0.089 0.911 30 H 0.050 0.950 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.031 0.969 34 H 0.040 0.960 35 H 0.265 0.735 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.107 0.893 39 H 0.115 0.885 40 H 0.133 0.867 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.189 -3.941 -18.000 21.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.057 4.057 3 H 0.110 0.890 4 C -0.175 4.175 5 C 0.298 3.702 6 O -0.404 6.404 7 N -0.324 5.324 8 C 0.094 3.906 9 C -0.569 4.569 10 H 0.093 0.907 11 C -0.129 4.129 12 N -0.534 5.534 13 Si 0.702 3.298 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.190 1.190 17 C -0.009 4.009 18 C -0.093 4.093 19 C -0.102 4.102 20 N -0.120 5.120 21 C -0.104 4.104 22 C -0.105 4.105 23 C -0.147 4.147 24 C -0.118 4.118 25 C -0.174 4.174 26 C 0.080 3.920 27 F -0.115 7.115 28 H 0.069 0.931 29 H 0.108 0.892 30 H 0.069 0.931 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.049 0.951 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.114 0.886 37 H 0.097 0.903 38 H 0.125 0.875 39 H 0.133 0.867 40 H 0.151 0.849 41 H 0.146 0.854 42 H 0.147 0.853 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 10.590 -4.728 -17.722 21.180 hybrid contribution 0.230 1.183 0.565 1.331 sum 10.821 -3.545 -17.158 20.592 Atomic orbital electron populations 1.21967 0.92985 1.01876 1.03692 1.19847 0.97339 0.99512 0.89001 0.89033 1.21828 1.02316 1.00385 0.92947 1.20310 0.79819 0.85885 0.84165 1.90662 1.39079 1.24675 1.85948 1.47892 1.53481 1.23787 1.07266 1.19720 0.96412 0.92698 0.81788 1.21302 1.02149 1.21713 1.11751 0.90662 1.24853 0.94696 0.96485 0.96892 1.69887 1.16155 1.42507 1.24865 0.86880 0.80520 0.83205 0.79235 1.19901 1.21146 1.18997 1.21323 0.87145 0.87642 1.04765 1.19902 0.94644 0.88787 1.05967 1.29057 0.93609 0.94612 0.92926 1.81216 1.09956 1.11591 1.09238 1.20078 0.98361 0.95037 0.96949 1.20988 0.98770 0.93210 0.97516 1.21214 0.98497 1.00393 0.94605 1.20978 0.97790 0.93596 0.99443 1.21128 1.02833 0.95983 0.97413 1.17608 0.99168 0.79114 0.96099 1.91501 1.91037 1.34173 1.94810 0.93068 0.89236 0.93099 0.89411 0.88932 0.95087 0.94246 0.92520 0.88571 0.90257 0.87484 0.86696 0.84874 0.85437 0.85316 0.84978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 8.75 37.16 0.33 -1.71 16 2 C -0.04 -0.49 2.19 -91.77 -0.20 -0.69 16 3 H 0.09 1.34 6.94 -51.93 -0.36 0.98 16 4 C -0.13 -1.66 3.47 -27.88 -0.10 -1.75 16 5 C 0.51 8.79 7.39 -10.98 -0.08 8.71 16 6 O -0.53 -11.30 13.55 5.55 0.08 -11.23 16 7 N -0.59 -10.18 2.46 -175.06 -0.43 -10.61 16 8 C 0.21 4.64 4.23 -5.19 -0.02 4.62 16 9 C -0.53 -14.15 9.94 -34.44 -0.34 -14.49 16 10 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 11 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 12 N -0.90 -26.64 13.96 55.43 0.77 -25.86 16 13 Si 0.87 20.51 27.47 -169.99 -4.67 15.84 16 14 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 15 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 16 H -0.27 -5.74 6.54 56.52 0.37 -5.37 16 17 C 0.12 1.47 5.16 -4.04 -0.02 1.45 16 18 C -0.05 -0.50 6.02 -29.52 -0.18 -0.68 16 19 C 0.22 2.49 15.43 -20.76 -0.32 2.17 16 20 N -0.44 -6.31 18.54 42.15 0.78 -5.53 16 21 C -0.10 -1.15 4.79 -104.56 -0.50 -1.65 16 22 C -0.09 -0.81 8.76 -39.59 -0.35 -1.16 16 23 C -0.13 -1.02 10.04 -39.58 -0.40 -1.42 16 24 C -0.10 -0.77 10.04 -39.59 -0.40 -1.17 16 25 C -0.15 -1.41 10.03 -39.52 -0.40 -1.80 16 26 C 0.10 1.12 7.25 -39.42 -0.29 0.84 16 27 F -0.14 -1.75 16.20 2.25 0.04 -1.71 16 28 H 0.05 0.62 7.39 -51.93 -0.38 0.24 16 29 H 0.09 1.53 5.95 -51.93 -0.31 1.23 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.09 0.88 7.16 -51.92 -0.37 0.51 16 32 H 0.09 0.99 6.84 -51.93 -0.35 0.64 16 33 H 0.03 0.63 7.13 -51.93 -0.37 0.26 16 34 H 0.04 0.92 6.85 -51.93 -0.36 0.57 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 36 H 0.10 1.31 8.07 -51.93 -0.42 0.89 16 37 H 0.08 0.83 6.45 -51.93 -0.33 0.49 16 38 H 0.11 0.84 7.20 -51.93 -0.37 0.47 16 39 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.13 1.09 7.16 -52.48 -0.38 0.71 16 41 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 42 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 43 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 LS Contribution 365.84 15.07 5.51 5.51 Total: -1.00 -33.35 365.84 -6.99 -40.34 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -5.71 Total: 0.05 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -3.36 Total: -6.80 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: 1.13 Total: -42.01 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.08 Total: -11.23 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.67 Total: 15.84 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.35 -6.99 -40.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263787561.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.115 kcal (2) G-P(sol) polarization free energy of solvation -33.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds