Wall clock time and date at job start Tue Mar 31 2020 14:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47161 * 2 1 4 4 C 1.53004 * 109.46787 * 119.99935 * 2 1 3 5 5 C 1.50700 * 109.47208 * 294.99932 * 4 2 1 6 6 O 1.21283 * 119.99803 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99675 * 180.27843 * 5 4 2 8 8 C 1.46497 * 119.99525 * 179.72583 * 7 5 4 9 9 C 1.50709 * 109.47273 * 89.99834 * 8 7 5 10 10 H 1.07999 * 119.99476 * 359.97438 * 9 8 7 11 11 C 1.37873 * 120.00210 * 179.97438 * 9 8 7 12 12 N 1.31510 * 120.00400 * 179.97438 * 11 9 8 13 13 Si 1.86811 * 119.99937 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.46951 * 89.99952 * 13 11 9 15 15 H 1.48501 * 109.46896 * 209.99905 * 13 11 9 16 16 H 1.48500 * 109.46904 * 329.99741 * 13 11 9 17 17 C 1.46496 * 120.00345 * 359.72090 * 7 5 4 18 18 C 1.53005 * 109.46942 * 90.00092 * 17 7 5 19 19 C 1.47196 * 109.47093 * 179.97438 * 18 17 7 20 20 N 6.74428 * 127.14857 * 131.13633 * 2 1 3 21 21 C 1.50696 * 109.47535 * 239.99977 * 2 1 3 22 22 C 1.38222 * 120.01312 * 300.00814 * 21 2 1 23 23 C 1.38224 * 120.02854 * 179.97438 * 22 21 2 24 24 C 1.38261 * 120.04907 * 0.02562 * 23 22 21 25 25 C 1.38178 * 120.02683 * 359.97438 * 24 23 22 26 26 C 1.38440 * 120.01695 * 119.72304 * 21 2 1 27 27 F 1.35108 * 120.02107 * 0.02562 * 26 21 2 28 28 H 1.09000 * 109.47161 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47289 * 300.00150 * 1 2 3 30 30 H 1.09004 * 109.46667 * 59.99742 * 1 2 3 31 31 H 1.09009 * 109.46730 * 174.99839 * 4 2 1 32 32 H 1.08998 * 109.46846 * 55.00383 * 4 2 1 33 33 H 1.09000 * 109.46889 * 209.99487 * 8 7 5 34 34 H 1.09001 * 109.47460 * 330.00097 * 8 7 5 35 35 H 0.97001 * 120.00447 * 180.02562 * 12 11 9 36 36 H 1.08995 * 109.47364 * 210.00706 * 17 7 5 37 37 H 1.09002 * 109.47090 * 330.00257 * 17 7 5 38 38 H 1.08998 * 109.46999 * 300.00039 * 18 17 7 39 39 H 1.08997 * 109.46656 * 60.00331 * 18 17 7 40 40 H 1.08006 * 119.98435 * 359.97438 * 22 21 2 41 41 H 1.07999 * 119.97281 * 180.02562 * 23 22 21 42 42 H 1.08002 * 119.98911 * 179.97438 * 24 23 22 43 43 H 1.08003 * 120.01234 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6412 0.0570 2.4766 6 8 1.0117 1.0875 2.3632 7 7 1.9896 -0.3888 3.6999 8 6 1.6072 0.3710 4.8926 9 6 0.2619 -0.1024 5.3799 10 1 -0.2564 -0.8901 4.8535 11 6 -0.3070 0.4701 6.4977 12 7 -1.4811 0.0574 6.9227 13 14 0.5895 1.8332 7.4079 14 1 0.1977 3.1483 6.8402 15 1 0.2280 1.7879 8.8475 16 1 2.0552 1.6467 7.2595 17 6 2.7505 -1.6331 3.8368 18 6 4.2481 -1.3212 3.8050 19 6 5.0127 -2.5714 3.9431 20 7 5.6028 -3.5364 4.0487 21 6 2.0324 -0.7104 -1.2304 22 6 1.6986 -2.0337 -1.4495 23 6 2.1588 -2.6854 -2.5782 24 6 2.9540 -2.0148 -3.4891 25 6 3.2890 -0.6919 -3.2722 26 6 2.8237 -0.0362 -2.1447 27 9 3.1463 1.2588 -1.9343 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.1263 -0.7995 1.2056 32 1 1.6053 -1.7198 1.2951 33 1 2.3511 0.2184 5.6746 34 1 1.5517 1.4312 4.6458 35 1 -1.8815 0.4605 7.7089 36 1 2.4988 -2.1106 4.7837 37 1 2.5015 -2.3037 3.0143 38 1 4.4997 -0.8438 2.8580 39 1 4.4971 -0.6507 4.6275 40 1 1.0779 -2.5586 -0.7384 41 1 1.8971 -3.7192 -2.7487 42 1 3.3134 -2.5251 -4.3705 43 1 3.9105 -0.1684 -3.9836 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263787561.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:17 Heat of formation + Delta-G solvation = -56.332409 kcal Electronic energy + Delta-G solvation = -26317.790877 eV Core-core repulsion = 22469.542184 eV Total energy + Delta-G solvation = -3848.248693 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.84349 -41.10182 -39.92545 -38.02565 -36.85900 -35.95824 -34.76531 -32.33957 -31.41333 -31.00220 -30.00946 -28.33375 -25.20624 -25.08137 -24.02730 -23.33391 -21.27829 -19.71023 -19.15859 -18.70733 -18.39885 -17.88460 -17.45543 -16.93029 -16.54632 -16.43957 -16.32094 -15.83537 -15.67183 -15.12967 -15.00420 -14.86722 -14.61004 -14.36229 -14.13028 -13.95050 -13.83307 -13.65877 -13.51936 -13.33144 -13.17126 -13.04336 -12.76808 -12.66099 -12.50403 -12.40639 -12.09323 -11.97187 -11.86798 -11.76101 -11.67073 -11.54987 -10.75994 -10.48513 -9.82524 -9.53660 -9.41200 -8.26677 -6.30622 0.26770 0.33783 1.38732 1.42845 1.49800 1.70116 1.86000 1.90485 2.30368 2.37126 2.72446 3.07750 3.14777 3.38499 3.57650 3.75503 3.95787 4.02589 4.08191 4.13990 4.16856 4.25898 4.44609 4.47227 4.49925 4.57377 4.68836 4.81767 4.82887 4.91925 4.93615 5.04836 5.10728 5.13188 5.17942 5.19289 5.31701 5.44746 5.53628 5.56042 5.57679 5.68161 6.03765 6.31272 6.62197 6.71951 6.74312 7.30100 7.50762 8.90086 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.012955 B = 0.003717 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.875248 B = 7530.759170 C = 8676.074682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.033 4.033 3 H 0.066 0.934 4 C -0.123 4.123 5 C 0.504 3.496 6 O -0.579 6.579 7 N -0.596 5.596 8 C 0.221 3.779 9 C -0.530 4.530 10 H 0.032 0.968 11 C 0.009 3.991 12 N -0.949 5.949 13 Si 0.941 3.059 14 H -0.280 1.280 15 H -0.284 1.284 16 H -0.228 1.228 17 C 0.112 3.888 18 C -0.039 4.039 19 C 0.245 3.755 20 N -0.489 5.489 21 C -0.114 4.114 22 C -0.092 4.092 23 C -0.124 4.124 24 C -0.094 4.094 25 C -0.157 4.157 26 C 0.072 3.928 27 F -0.154 7.154 28 H 0.067 0.933 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.120 0.880 32 H 0.115 0.885 33 H 0.058 0.942 34 H 0.023 0.977 35 H 0.265 0.735 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.136 0.864 39 H 0.127 0.873 40 H 0.144 0.856 41 H 0.155 0.845 42 H 0.159 0.841 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.836 -5.164 -19.577 23.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.051 4.051 3 H 0.084 0.916 4 C -0.162 4.162 5 C 0.293 3.707 6 O -0.458 6.458 7 N -0.326 5.326 8 C 0.099 3.901 9 C -0.569 4.569 10 H 0.050 0.950 11 C -0.188 4.188 12 N -0.590 5.590 13 Si 0.765 3.235 14 H -0.206 1.206 15 H -0.210 1.210 16 H -0.151 1.151 17 C -0.013 4.013 18 C -0.080 4.080 19 C -0.072 4.072 20 N -0.167 5.167 21 C -0.115 4.115 22 C -0.110 4.110 23 C -0.142 4.142 24 C -0.112 4.112 25 C -0.176 4.176 26 C 0.053 3.947 27 F -0.133 7.133 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.138 0.862 32 H 0.134 0.866 33 H 0.076 0.924 34 H 0.041 0.959 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.123 0.877 38 H 0.153 0.847 39 H 0.145 0.855 40 H 0.162 0.838 41 H 0.173 0.827 42 H 0.177 0.823 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 13.287 -5.994 -19.319 24.201 hybrid contribution -0.688 1.482 0.933 1.882 sum 12.599 -4.512 -18.386 22.741 Atomic orbital electron populations 1.21881 0.94236 1.02270 1.01723 1.19666 0.96277 0.98674 0.90533 0.91599 1.21841 1.04377 1.00179 0.89822 1.21200 0.78625 0.85520 0.85311 1.90648 1.41280 1.27177 1.86744 1.47864 1.53851 1.24877 1.06038 1.19391 0.94340 0.92244 0.84101 1.21622 1.04102 1.20138 1.11008 0.95009 1.25821 0.95509 0.99292 0.98203 1.70054 1.18378 1.44643 1.25880 0.85809 0.81302 0.79001 0.77412 1.20575 1.20962 1.15101 1.21533 0.88487 0.85883 1.05357 1.19861 0.91963 0.88088 1.08073 1.29161 0.92603 0.94092 0.91382 1.81262 1.11518 1.12958 1.11010 1.19882 0.99475 0.95799 0.96297 1.21171 0.98873 0.92427 0.98484 1.21573 0.97408 1.01561 0.93639 1.21381 0.96723 0.92914 1.00150 1.21386 1.02686 0.96723 0.96795 1.17945 1.00563 0.78759 0.97426 1.91454 1.91356 1.35437 1.95045 0.91421 0.93249 0.92926 0.86159 0.86649 0.92436 0.95878 0.92586 0.89775 0.87708 0.84665 0.85505 0.83781 0.82735 0.82307 0.83551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.06 8.75 71.98 0.63 -3.43 16 2 C -0.03 -0.82 2.19 -11.54 -0.03 -0.85 16 3 H 0.07 2.00 6.94 -2.39 -0.02 1.99 16 4 C -0.12 -2.79 3.47 29.85 0.10 -2.69 16 5 C 0.50 17.18 7.39 87.66 0.65 17.83 16 6 O -0.58 -25.77 13.55 -3.04 -0.04 -25.81 16 7 N -0.60 -19.82 2.46 -826.15 -2.03 -21.85 16 8 C 0.22 9.46 4.23 85.64 0.36 9.83 16 9 C -0.53 -29.00 9.94 25.60 0.25 -28.75 16 10 H 0.03 1.96 8.06 -2.91 -0.02 1.93 16 11 C 0.01 0.52 5.47 84.65 0.46 0.99 16 12 N -0.95 -58.55 13.96 21.45 0.30 -58.25 16 13 Si 0.94 42.35 27.47 68.60 1.88 44.24 16 14 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 15 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 16 H -0.23 -8.83 6.54 99.48 0.65 -8.18 16 17 C 0.11 2.52 5.16 86.38 0.45 2.97 16 18 C -0.04 -0.61 6.02 28.79 0.17 -0.43 16 19 C 0.24 4.90 15.43 89.44 1.38 6.28 16 20 N -0.49 -12.91 18.54 20.00 0.37 -12.54 16 21 C -0.11 -2.34 4.79 -19.82 -0.09 -2.43 16 22 C -0.09 -1.43 8.76 22.26 0.20 -1.24 16 23 C -0.12 -1.46 10.04 22.27 0.22 -1.24 16 24 C -0.09 -1.08 10.04 22.26 0.22 -0.86 16 25 C -0.16 -2.47 10.03 22.31 0.22 -2.24 16 26 C 0.07 1.54 7.25 22.37 0.16 1.71 16 27 F -0.15 -3.97 16.20 44.97 0.73 -3.24 16 28 H 0.07 1.62 7.39 -2.39 -0.02 1.60 16 29 H 0.05 1.80 5.95 -2.39 -0.01 1.79 16 30 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.12 1.97 7.16 -2.38 -0.02 1.96 16 32 H 0.12 2.13 6.84 -2.39 -0.02 2.11 16 33 H 0.06 2.17 7.13 -2.39 -0.02 2.16 16 34 H 0.02 1.08 6.85 -2.39 -0.02 1.06 16 35 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 36 H 0.08 2.14 8.07 -2.39 -0.02 2.12 16 37 H 0.10 1.83 6.45 -2.39 -0.02 1.82 16 38 H 0.14 1.47 7.20 -2.39 -0.02 1.45 16 39 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.14 1.87 7.16 -2.91 -0.02 1.85 16 41 H 0.15 1.00 8.06 -2.91 -0.02 0.98 16 42 H 0.16 0.87 8.06 -2.91 -0.02 0.84 16 43 H 0.15 1.78 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -78.57 365.84 7.55 -71.01 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: 0.97 Total: 11.00 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: 5.37 Total: -4.56 kcal Atomic # 7 Polarization: -91.27 SS G_CDS: -1.36 Total: -92.63 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.04 Total: -25.81 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.73 Total: -3.24 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 1.88 Total: 44.24 kcal Total: -78.57 7.55 -71.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263787561.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.681 kcal (2) G-P(sol) polarization free energy of solvation -78.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds