Wall clock time and date at job start Tue Mar 31 2020 14:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47363 * 2 1 4 4 C 1.53004 * 109.46748 * 119.99482 * 2 1 3 5 5 C 1.50693 * 109.47304 * 294.99619 * 4 2 1 6 6 C 1.38222 * 120.01735 * 264.72935 * 5 4 2 7 7 C 1.38227 * 120.02243 * 179.72233 * 6 5 4 8 8 C 1.38262 * 120.05214 * 0.54982 * 7 6 5 9 9 C 1.38178 * 120.02725 * 359.72729 * 8 7 6 10 10 C 1.38440 * 120.01089 * 85.00309 * 5 4 2 11 11 F 1.35107 * 120.02474 * 359.97438 * 10 5 4 12 12 C 1.50705 * 109.47254 * 239.99307 * 2 1 3 13 13 O 1.21279 * 120.00108 * 258.08298 * 12 2 1 14 14 N 1.34770 * 119.99579 * 77.81150 * 12 2 1 15 15 C 1.46497 * 120.00487 * 355.54032 * 14 12 2 16 16 C 1.50703 * 109.47155 * 84.09131 * 15 14 12 17 17 H 1.07999 * 119.99588 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99973 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99569 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00160 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47341 * 89.99618 * 20 18 16 22 22 H 1.48501 * 109.47149 * 209.99942 * 20 18 16 23 23 H 1.48501 * 109.47457 * 329.99981 * 20 18 16 24 24 C 1.46500 * 119.99635 * 175.54558 * 14 12 2 25 25 C 1.53004 * 109.47397 * 86.16953 * 24 14 12 26 26 C 1.47194 * 109.46948 * 180.02562 * 25 24 14 27 27 N 7.01625 * 98.56996 * 246.29052 * 2 1 3 28 28 H 1.08997 * 109.46989 * 307.03107 * 1 2 3 29 29 H 1.08997 * 109.46756 * 67.02750 * 1 2 3 30 30 H 1.08999 * 109.46979 * 187.02607 * 1 2 3 31 31 H 1.08997 * 109.47239 * 55.00426 * 4 2 1 32 32 H 1.09002 * 109.47230 * 174.99693 * 4 2 1 33 33 H 1.07997 * 119.98183 * 359.97438 * 6 5 4 34 34 H 1.07997 * 119.96617 * 180.24956 * 7 6 5 35 35 H 1.08003 * 119.98299 * 179.74225 * 8 7 6 36 36 H 1.07997 * 120.00918 * 180.02562 * 9 8 7 37 37 H 1.08995 * 109.47453 * 204.09997 * 15 14 12 38 38 H 1.09003 * 109.47300 * 324.09739 * 15 14 12 39 39 H 0.97005 * 119.99601 * 180.02562 * 19 18 16 40 40 H 1.09010 * 109.47025 * 206.16084 * 24 14 12 41 41 H 1.08994 * 109.47451 * 326.16228 * 24 14 12 42 42 H 1.09010 * 109.46325 * 299.99560 * 25 24 14 43 43 H 1.08994 * 109.47412 * 59.99252 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 1.6413 0.0572 2.4766 6 6 2.5260 0.9555 3.0432 7 6 2.1583 1.6737 4.1656 8 6 0.9098 1.4864 4.7293 9 6 0.0259 0.5848 4.1679 10 6 0.3910 -0.1312 3.0402 11 9 -0.4727 -1.0126 2.4902 12 6 2.0324 -0.7106 -1.2304 13 8 2.4390 -1.8503 -1.1490 14 7 2.0247 -0.0814 -2.4222 15 6 1.4385 1.2560 -2.5408 16 6 2.4605 2.2895 -2.1426 17 1 3.4480 1.9809 -1.8327 18 6 2.1348 3.6289 -2.1740 19 7 3.0269 4.5308 -1.8270 20 14 0.4267 4.1625 -2.7094 21 1 -0.4657 4.2280 -1.5242 22 1 0.5033 5.5019 -3.3460 23 1 -0.1158 3.1817 -3.6836 24 6 2.6023 -0.7349 -3.5992 25 6 1.5471 -1.6264 -4.2570 26 6 2.1278 -2.2835 -5.4392 27 7 2.5755 -2.7897 -6.3523 28 1 -0.3633 0.6189 0.8204 29 1 -0.3633 0.4011 -0.9462 30 1 -0.3633 -1.0199 0.1257 31 1 1.6053 -1.7197 1.2953 32 1 3.1262 -0.7995 1.2058 33 1 3.5032 1.0991 2.6065 34 1 2.8487 2.3783 4.6052 35 1 0.6253 2.0451 5.6087 36 1 -0.9493 0.4389 4.6083 37 1 1.1308 1.4277 -3.5722 38 1 0.5708 1.3319 -1.8854 39 1 2.7977 5.4731 -1.8487 40 1 2.9322 0.0227 -4.3102 41 1 3.4540 -1.3435 -3.2956 42 1 1.2172 -2.3840 -3.5460 43 1 0.6954 -1.0178 -4.5607 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265647546.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:40 Heat of formation + Delta-G solvation = -38.254764 kcal Electronic energy + Delta-G solvation = -26814.965349 eV Core-core repulsion = 22967.500562 eV Total energy + Delta-G solvation = -3847.464787 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.79102 -39.81984 -38.86041 -36.77289 -35.37643 -34.75900 -32.83523 -31.62865 -30.66482 -30.14231 -27.87385 -26.54527 -24.76497 -23.15570 -22.68362 -22.17421 -20.60354 -18.25251 -17.66568 -17.49517 -16.95608 -16.65943 -16.23192 -15.87553 -15.53830 -15.36531 -14.78333 -14.58135 -14.29586 -14.05432 -13.69695 -13.58758 -13.29986 -13.16680 -12.75121 -12.56097 -12.47398 -12.41352 -12.33365 -12.17943 -11.88273 -11.83674 -11.53565 -11.46648 -11.11384 -10.97167 -10.84223 -10.72386 -10.56597 -10.46224 -10.34754 -9.69555 -9.15095 -8.85441 -8.78268 -8.51705 -7.96533 -6.29067 -4.31004 1.22805 1.27577 2.79207 2.89257 3.12234 3.18629 3.21758 3.22391 3.54609 3.70317 4.19758 4.29791 4.35539 4.73909 4.80882 4.98428 5.01184 5.13337 5.23599 5.26188 5.27555 5.36354 5.42763 5.49279 5.59339 5.81576 5.88768 5.94633 6.03981 6.06295 6.11487 6.16514 6.21573 6.25523 6.30810 6.38504 6.44296 6.50638 6.65731 6.73646 6.97315 7.17335 7.35297 7.65246 7.97509 8.29179 8.73082 8.80644 9.29859 10.83189 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.010054 B = 0.004909 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2784.193453 B = 5702.009812 C = 7495.405008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 H 0.122 0.878 4 C -0.060 4.060 5 C -0.104 4.104 6 C -0.083 4.083 7 C -0.128 4.128 8 C -0.101 4.101 9 C -0.158 4.158 10 C 0.100 3.900 11 F -0.137 7.137 12 C 0.530 3.470 13 O -0.566 6.566 14 N -0.591 5.591 15 C 0.199 3.801 16 C -0.543 4.543 17 H 0.080 0.920 18 C 0.079 3.921 19 N -0.887 5.887 20 Si 0.866 3.134 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.263 1.263 24 C 0.127 3.873 25 C -0.047 4.047 26 C 0.220 3.780 27 N -0.449 5.449 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.135 0.865 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.037 0.963 38 H 0.040 0.960 39 H 0.267 0.733 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.111 0.889 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.487 -5.181 10.000 12.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.128 4.128 3 H 0.140 0.860 4 C -0.098 4.098 5 C -0.105 4.105 6 C -0.101 4.101 7 C -0.146 4.146 8 C -0.119 4.119 9 C -0.177 4.177 10 C 0.081 3.919 11 F -0.115 7.115 12 C 0.319 3.681 13 O -0.446 6.446 14 N -0.320 5.320 15 C 0.078 3.922 16 C -0.581 4.581 17 H 0.098 0.902 18 C -0.125 4.125 19 N -0.524 5.524 20 Si 0.693 3.307 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.188 1.188 24 C 0.001 3.999 25 C -0.088 4.088 26 C -0.098 4.098 27 N -0.126 5.126 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.153 0.847 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.148 0.852 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.077 0.923 40 H 0.108 0.892 41 H 0.100 0.900 42 H 0.129 0.871 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.613 -6.341 8.655 12.109 hybrid contribution -1.219 0.822 -0.037 1.471 sum -6.832 -5.518 8.619 12.305 Atomic orbital electron populations 1.21940 0.93395 1.02119 1.02628 1.21304 0.97335 1.02826 0.91345 0.86007 1.20365 1.02025 0.97983 0.89379 1.20011 0.92966 0.99406 0.98129 1.21075 0.99705 0.94238 0.95045 1.21206 0.96807 0.99971 0.96613 1.20949 0.93619 0.97517 0.99829 1.21082 1.01265 0.98858 0.96475 1.17535 0.88226 0.91831 0.94322 1.91487 1.68724 1.66462 1.84867 1.20456 0.77343 0.85703 0.84612 1.90610 1.49290 1.18362 1.86315 1.47880 1.58647 1.18535 1.06975 1.20070 0.94888 0.79101 0.98104 1.21338 1.00138 0.89908 1.46728 0.90236 1.24851 0.96821 0.96472 0.94344 1.69882 1.34200 1.01439 1.46926 0.87002 0.85128 0.78888 0.79724 1.19717 1.20903 1.18775 1.21149 0.94528 0.95980 0.88200 1.19800 0.99908 0.99595 0.89504 1.29101 0.93371 0.93170 0.94140 1.81184 1.09273 1.10220 1.11938 0.92116 0.91586 0.92242 0.90161 0.90136 0.84746 0.85463 0.85454 0.85163 0.94538 0.94267 0.92308 0.89214 0.90008 0.87055 0.87297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 7.36 37.16 0.27 -1.90 16 2 C -0.11 -1.78 1.92 -91.77 -0.18 -1.96 16 3 H 0.12 2.30 6.57 -51.93 -0.34 1.96 16 4 C -0.06 -0.91 4.05 -27.88 -0.11 -1.02 16 5 C -0.10 -1.46 4.86 -104.56 -0.51 -1.97 16 6 C -0.08 -1.07 9.68 -39.59 -0.38 -1.46 16 7 C -0.13 -1.44 10.04 -39.58 -0.40 -1.84 16 8 C -0.10 -1.06 10.04 -39.59 -0.40 -1.46 16 9 C -0.16 -1.81 10.03 -39.52 -0.40 -2.21 16 10 C 0.10 1.35 5.92 -39.42 -0.23 1.12 16 11 F -0.14 -1.92 14.24 2.25 0.03 -1.89 16 12 C 0.53 9.52 6.79 -10.99 -0.07 9.45 16 13 O -0.57 -11.01 15.81 5.56 0.09 -10.92 16 14 N -0.59 -10.34 2.48 -175.06 -0.43 -10.78 16 15 C 0.20 3.86 3.88 -5.19 -0.02 3.84 16 16 C -0.54 -12.97 8.70 -34.44 -0.30 -13.27 16 17 H 0.08 2.14 8.06 -52.49 -0.42 1.72 16 18 C 0.08 1.99 5.47 -17.82 -0.10 1.90 16 19 N -0.89 -24.32 13.96 55.43 0.77 -23.54 16 20 Si 0.87 18.56 27.47 -169.99 -4.67 13.89 16 21 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 23 H -0.26 -5.24 6.54 56.52 0.37 -4.87 16 24 C 0.13 1.91 5.26 -4.04 -0.02 1.89 16 25 C -0.05 -0.57 6.01 -29.52 -0.18 -0.75 16 26 C 0.22 3.06 15.43 -20.76 -0.32 2.74 16 27 N -0.45 -7.31 18.54 42.15 0.78 -6.53 16 28 H 0.06 0.90 6.26 -51.93 -0.33 0.58 16 29 H 0.07 0.99 5.74 -51.93 -0.30 0.69 16 30 H 0.06 0.86 7.47 -51.93 -0.39 0.47 16 31 H 0.08 1.24 7.72 -51.93 -0.40 0.84 16 32 H 0.08 1.22 8.05 -51.93 -0.42 0.81 16 33 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 34 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 35 H 0.13 0.99 8.06 -52.48 -0.42 0.56 16 36 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.04 0.69 7.09 -51.93 -0.37 0.32 16 38 H 0.04 0.74 4.13 -51.93 -0.21 0.52 16 39 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 40 H 0.09 1.34 8.04 -51.92 -0.42 0.92 16 41 H 0.08 1.29 7.61 -51.93 -0.40 0.89 16 42 H 0.11 1.34 8.14 -51.92 -0.42 0.92 16 43 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 362.24 15.07 5.46 5.46 Total: -1.00 -28.98 362.24 -7.00 -35.99 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -5.69 Total: 5.21 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -3.34 Total: -6.90 kcal Atomic # 7 Polarization: -41.97 SS G_CDS: 1.12 Total: -40.84 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.03 Total: -1.89 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -4.67 Total: 13.89 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.98 -7.00 -35.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265647546.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.267 kcal (2) G-P(sol) polarization free energy of solvation -28.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds