Wall clock time and date at job start Tue Mar 31 2020 14:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.46918 * 2 1 4 4 C 1.46500 * 119.99914 * 266.53600 * 3 2 1 5 5 C 1.50691 * 109.47162 * 270.00323 * 4 3 2 6 6 H 1.08006 * 120.00199 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00055 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00071 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00158 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47321 * 60.00240 * 9 7 5 11 11 H 1.48508 * 109.47135 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47353 * 299.99712 * 9 7 5 13 13 C 1.34775 * 119.99602 * 86.54087 * 3 2 1 14 14 O 1.21613 * 119.99554 * 174.67272 * 13 3 2 15 15 C 1.47429 * 120.00310 * 354.95223 * 13 3 2 16 16 N 1.35964 * 126.36457 * 354.40228 * 15 13 3 17 17 C 1.30944 * 108.39174 * 179.97438 * 16 15 13 18 18 C 1.47829 * 125.49910 * 180.02562 * 17 16 15 19 19 C 1.41084 * 126.27387 * 359.69108 * 18 17 16 20 20 N 1.30591 * 108.04749 * 179.84778 * 19 18 17 21 21 N 1.39992 * 108.60898 * 0.41293 * 20 19 18 22 22 C 1.46496 * 125.84728 * 179.77216 * 21 20 19 23 23 C 1.34640 * 108.30789 * 359.73233 * 21 20 19 24 24 O 1.34468 * 109.00217 * 0.02562 * 17 16 15 25 25 C 1.34370 * 108.19133 * 359.76879 * 24 17 16 26 26 C 1.50698 * 126.43053 * 180.26703 * 25 24 17 27 27 H 1.09001 * 109.47100 * 59.99954 * 1 2 3 28 28 H 1.09000 * 109.47007 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46749 * 299.99855 * 1 2 3 30 30 H 1.09000 * 109.46749 * 240.00145 * 2 1 3 31 31 H 1.09001 * 109.47100 * 120.00046 * 2 1 3 32 32 H 1.08999 * 109.47071 * 30.00703 * 4 3 2 33 33 H 1.09006 * 109.46515 * 150.00377 * 4 3 2 34 34 H 0.96995 * 120.00513 * 179.97438 * 8 7 5 35 35 H 1.08004 * 125.97385 * 0.02562 * 19 18 17 36 36 H 1.09004 * 109.46940 * 269.95975 * 22 21 20 37 37 H 1.09000 * 109.47146 * 29.94964 * 22 21 20 38 38 H 1.08997 * 109.47322 * 149.95759 * 22 21 20 39 39 H 1.08000 * 126.20783 * 179.97438 * 23 21 20 40 40 H 1.09001 * 109.46916 * 270.12039 * 26 25 24 41 41 H 1.09001 * 109.46841 * 30.12052 * 26 25 24 42 42 H 1.09001 * 109.46988 * 150.11685 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3347 2.0463 -1.2664 5 6 3.7802 1.8016 -1.6148 6 1 4.4012 1.2095 -0.9588 7 6 4.3103 2.3336 -2.7712 8 7 3.5541 3.0542 -3.5703 9 14 6.1023 2.0309 -3.2027 10 1 6.3391 0.5712 -3.3381 11 1 6.4230 2.7050 -4.4866 12 1 6.9693 2.5755 -2.1272 13 6 2.1765 2.0400 1.1651 14 8 2.6724 3.1504 1.1733 15 6 1.7540 1.4120 2.4303 16 7 1.0979 0.2286 2.5632 17 6 0.8983 0.0078 3.8384 18 6 0.2169 -1.1736 4.4087 19 6 -0.3342 -2.2505 3.6828 20 7 -0.8433 -3.0963 4.5378 21 7 -0.6493 -2.5958 5.8307 22 6 -1.0784 -3.2412 7.0739 23 6 0.0001 -1.4201 5.7361 24 8 1.4133 1.0292 4.5454 25 6 1.9525 1.9069 3.6826 26 6 2.6454 3.1978 4.0352 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6980 1.6466 -2.0557 33 1 2.1612 3.1179 -1.1672 34 1 3.9270 3.4288 -4.3836 35 1 -0.3326 -2.3582 2.6082 36 1 -2.0850 -2.9086 7.3272 37 1 -1.0760 -4.3231 6.9411 38 1 -0.3936 -2.9722 7.8781 39 1 0.2956 -0.7865 6.5593 40 1 1.9143 4.0057 4.0668 41 1 3.1213 3.1000 5.0110 42 1 3.4018 3.4214 3.2829 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267772068.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:41 Heat of formation + Delta-G solvation = 79.347584 kcal Electronic energy + Delta-G solvation = -26543.904245 eV Core-core repulsion = 22721.459040 eV Total energy + Delta-G solvation = -3822.445205 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.15575 -41.48569 -38.75003 -35.34446 -34.55457 -33.84597 -32.62078 -32.40264 -30.62949 -29.84413 -28.14017 -27.25064 -25.94718 -23.91127 -22.89047 -22.56232 -21.90702 -21.01157 -20.54272 -18.71751 -17.58379 -16.86154 -16.61103 -16.27557 -15.83223 -15.49869 -15.33760 -14.90016 -14.41518 -14.14717 -14.00633 -13.65671 -13.33455 -13.26513 -13.12856 -12.92323 -12.86726 -12.85256 -12.26733 -12.11778 -11.75992 -11.46691 -11.28464 -11.21549 -11.09021 -10.84098 -10.52169 -10.38007 -10.15404 -9.90465 -9.87689 -9.65186 -9.53598 -9.04610 -8.36415 -8.05527 -7.51035 -5.97224 -4.01448 1.00044 1.56955 1.98144 2.03198 2.60580 2.98581 3.37535 3.40916 3.44514 3.74379 3.96732 4.06962 4.33693 4.40934 4.51590 4.67034 4.77222 4.87607 4.94298 5.11125 5.18624 5.19957 5.36892 5.54349 5.63366 5.66020 5.81248 6.03579 6.05851 6.08744 6.16342 6.23393 6.28240 6.44109 6.49643 6.63554 6.93262 7.17253 7.23414 7.49867 7.62415 7.75906 7.99748 8.30770 8.51727 8.95215 9.13190 9.62995 11.10765 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.019953 B = 0.003195 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.973656 B = 8762.143299 C = 9454.119607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.111 3.889 3 N -0.577 5.577 4 C 0.247 3.753 5 C -0.523 4.523 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.276 1.276 13 C 0.585 3.415 14 O -0.537 6.537 15 C -0.050 4.050 16 N -0.438 5.438 17 C 0.261 3.739 18 C -0.163 4.163 19 C 0.104 3.896 20 N -0.294 5.294 21 N -0.369 5.369 22 C 0.100 3.900 23 C 0.094 3.906 24 O -0.202 6.202 25 C 0.021 3.979 26 C -0.069 4.069 27 H 0.046 0.954 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.035 0.965 33 H 0.042 0.958 34 H 0.263 0.737 35 H 0.199 0.801 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.185 0.815 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.499 -10.461 22.544 26.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 N -0.307 5.307 4 C 0.128 3.872 5 C -0.562 4.562 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.370 3.630 14 O -0.415 6.415 15 C -0.171 4.171 16 N -0.169 5.169 17 C 0.055 3.945 18 C -0.176 4.176 19 C -0.084 4.084 20 N -0.114 5.114 21 N -0.149 5.149 22 C -0.041 4.041 23 C -0.057 4.057 24 O -0.090 6.090 25 C -0.035 4.035 26 C -0.126 4.126 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.215 0.785 36 H 0.097 0.903 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.202 0.798 40 H 0.106 0.894 41 H 0.092 0.908 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.095 -11.377 22.136 26.858 hybrid contribution 1.537 0.969 0.164 1.824 sum -8.558 -10.408 22.300 26.055 Atomic orbital electron populations 1.22054 0.96701 1.00914 1.01395 1.21579 0.93892 0.83168 1.02666 1.48095 1.61762 1.13662 1.07165 1.19318 0.95893 0.93873 0.78079 1.21396 0.95786 1.32663 1.06314 0.92485 1.24921 0.98028 0.94994 0.96137 1.69923 1.36014 1.34489 1.13112 0.86564 0.85045 0.78286 0.77547 1.20279 1.21236 1.20202 1.16728 0.79524 0.85008 0.81716 1.90749 1.45083 1.19726 1.85936 1.21924 1.05649 0.94030 0.95480 1.71385 1.15671 1.14738 1.15092 1.22653 0.98290 0.88593 0.84999 1.17152 1.13131 0.95460 0.91899 1.24041 0.94160 0.89666 1.00508 1.77377 1.24601 1.22537 0.86852 1.48364 1.43845 1.15977 1.06711 1.21962 1.01280 0.99793 0.81091 1.22593 0.95758 0.89205 0.98103 1.84288 1.57634 1.28042 1.39067 1.23632 0.98772 0.93717 0.87354 1.20518 1.00407 0.88010 1.03625 0.93532 0.92762 0.92337 0.91009 0.89683 0.94743 0.93952 0.92725 0.78450 0.90264 0.88826 0.89119 0.79814 0.89385 0.90818 0.86845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.64 37.16 0.36 -2.14 16 2 C 0.11 2.11 5.67 -4.04 -0.02 2.08 16 3 N -0.58 -13.34 2.46 -176.32 -0.43 -13.78 16 4 C 0.25 6.71 5.10 -5.20 -0.03 6.68 16 5 C -0.52 -15.24 9.39 -34.44 -0.32 -15.56 16 6 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 9 Si 0.90 22.29 29.54 -169.99 -5.02 17.27 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 13 C 0.58 13.27 7.64 -12.52 -0.10 13.17 16 14 O -0.54 -13.54 14.48 5.27 0.08 -13.46 16 15 C -0.05 -0.93 6.46 -83.06 -0.54 -1.46 16 16 N -0.44 -7.24 6.20 -8.27 -0.05 -7.29 16 17 C 0.26 3.72 8.09 -14.01 -0.11 3.60 16 18 C -0.16 -1.88 6.09 -105.43 -0.64 -2.52 16 19 C 0.10 1.16 11.98 -17.00 -0.20 0.96 16 20 N -0.29 -3.22 12.53 30.84 0.39 -2.83 16 21 N -0.37 -3.05 4.00 -67.86 -0.27 -3.32 16 22 C 0.10 0.35 11.45 59.84 0.69 1.04 16 23 C 0.09 0.80 11.44 -16.86 -0.19 0.61 16 24 O -0.20 -2.86 10.75 5.08 0.05 -2.81 16 25 C 0.02 0.33 7.43 -35.07 -0.26 0.07 16 26 C -0.07 -0.91 9.82 36.00 0.35 -0.56 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.99 6.50 -51.93 -0.34 0.66 16 30 H 0.07 1.39 8.05 -51.93 -0.42 0.97 16 31 H 0.09 1.56 5.72 -51.93 -0.30 1.26 16 32 H 0.03 0.95 8.07 -51.93 -0.42 0.53 16 33 H 0.04 1.27 7.50 -51.93 -0.39 0.88 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.20 1.97 8.06 -52.48 -0.42 1.55 16 36 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 37 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 39 H 0.18 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.11 1.75 6.59 -51.93 -0.34 1.41 16 LS Contribution 361.86 15.07 5.45 5.45 Total: -1.00 -35.87 361.86 -5.74 -41.61 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -5.55 Total: -2.19 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: -1.12 Total: 7.66 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: 0.37 Total: -53.53 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: 0.13 Total: -16.27 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.87 -5.74 -41.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267772068.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.955 kcal (2) G-P(sol) polarization free energy of solvation -35.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds