Wall clock time and date at job start Tue Mar 31 2020 14:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.46918 * 2 1 4 4 C 1.46500 * 119.99914 * 266.53600 * 3 2 1 5 5 C 1.50691 * 109.47162 * 270.00323 * 4 3 2 6 6 H 1.08006 * 120.00199 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00055 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00071 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00158 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47321 * 60.00240 * 9 7 5 11 11 H 1.48508 * 109.47135 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47353 * 299.99712 * 9 7 5 13 13 C 1.34775 * 119.99602 * 86.54087 * 3 2 1 14 14 O 1.21613 * 119.99554 * 174.67272 * 13 3 2 15 15 C 1.47429 * 120.00310 * 354.95223 * 13 3 2 16 16 N 1.35964 * 126.36457 * 354.40228 * 15 13 3 17 17 C 1.30944 * 108.39174 * 179.97438 * 16 15 13 18 18 C 1.47829 * 125.49910 * 180.02562 * 17 16 15 19 19 C 1.41084 * 126.27387 * 359.69108 * 18 17 16 20 20 N 1.30591 * 108.04749 * 179.84778 * 19 18 17 21 21 N 1.39992 * 108.60898 * 0.41293 * 20 19 18 22 22 C 1.46496 * 125.84728 * 179.77216 * 21 20 19 23 23 C 1.34640 * 108.30789 * 359.73233 * 21 20 19 24 24 O 1.34468 * 109.00217 * 0.02562 * 17 16 15 25 25 C 1.34370 * 108.19133 * 359.76879 * 24 17 16 26 26 C 1.50698 * 126.43053 * 180.26703 * 25 24 17 27 27 H 1.09001 * 109.47100 * 59.99954 * 1 2 3 28 28 H 1.09000 * 109.47007 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46749 * 299.99855 * 1 2 3 30 30 H 1.09000 * 109.46749 * 240.00145 * 2 1 3 31 31 H 1.09001 * 109.47100 * 120.00046 * 2 1 3 32 32 H 1.08999 * 109.47071 * 30.00703 * 4 3 2 33 33 H 1.09006 * 109.46515 * 150.00377 * 4 3 2 34 34 H 0.96995 * 120.00513 * 179.97438 * 8 7 5 35 35 H 1.08004 * 125.97385 * 0.02562 * 19 18 17 36 36 H 1.09004 * 109.46940 * 269.95975 * 22 21 20 37 37 H 1.09000 * 109.47146 * 29.94964 * 22 21 20 38 38 H 1.08997 * 109.47322 * 149.95759 * 22 21 20 39 39 H 1.08000 * 126.20783 * 179.97438 * 23 21 20 40 40 H 1.09001 * 109.46916 * 270.12039 * 26 25 24 41 41 H 1.09001 * 109.46841 * 30.12052 * 26 25 24 42 42 H 1.09001 * 109.46988 * 150.11685 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3347 2.0463 -1.2664 5 6 3.7802 1.8016 -1.6148 6 1 4.4012 1.2095 -0.9588 7 6 4.3103 2.3336 -2.7712 8 7 3.5541 3.0542 -3.5703 9 14 6.1023 2.0309 -3.2027 10 1 6.3391 0.5712 -3.3381 11 1 6.4230 2.7050 -4.4866 12 1 6.9693 2.5755 -2.1272 13 6 2.1765 2.0400 1.1651 14 8 2.6724 3.1504 1.1733 15 6 1.7540 1.4120 2.4303 16 7 1.0979 0.2286 2.5632 17 6 0.8983 0.0078 3.8384 18 6 0.2169 -1.1736 4.4087 19 6 -0.3342 -2.2505 3.6828 20 7 -0.8433 -3.0963 4.5378 21 7 -0.6493 -2.5958 5.8307 22 6 -1.0784 -3.2412 7.0739 23 6 0.0001 -1.4201 5.7361 24 8 1.4133 1.0292 4.5454 25 6 1.9525 1.9069 3.6826 26 6 2.6454 3.1978 4.0352 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6980 1.6466 -2.0557 33 1 2.1612 3.1179 -1.1672 34 1 3.9270 3.4288 -4.3836 35 1 -0.3326 -2.3582 2.6082 36 1 -2.0850 -2.9086 7.3272 37 1 -1.0760 -4.3231 6.9411 38 1 -0.3936 -2.9722 7.8781 39 1 0.2956 -0.7865 6.5593 40 1 1.9143 4.0057 4.0668 41 1 3.1213 3.1000 5.0110 42 1 3.4018 3.4214 3.2829 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267772068.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:40 Heat of formation + Delta-G solvation = 54.748668 kcal Electronic energy + Delta-G solvation = -26544.970934 eV Core-core repulsion = 22721.459040 eV Total energy + Delta-G solvation = -3823.511894 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.34977 -42.21131 -40.51139 -37.08431 -35.87696 -34.80073 -34.51833 -33.43700 -31.55478 -31.47704 -29.58283 -28.44486 -27.09419 -25.50984 -24.53817 -23.92303 -22.97737 -21.93630 -21.62105 -20.09951 -18.73960 -18.49084 -18.03054 -17.88557 -17.17697 -16.62533 -16.42561 -16.27421 -15.80042 -15.69769 -15.16347 -14.95376 -14.62083 -14.44018 -14.31996 -14.00752 -13.91650 -13.57549 -13.52312 -13.40824 -13.25128 -13.14302 -13.08171 -12.66312 -12.60651 -12.49675 -12.13121 -11.94394 -11.74300 -11.68383 -11.37755 -10.81352 -10.68722 -10.62847 -10.51129 -9.48495 -9.01228 -8.20708 -6.35807 -0.02027 0.54699 1.01391 1.27900 1.37486 1.41834 1.49468 1.61540 1.95867 2.22030 2.40576 2.45505 2.84388 3.08114 3.54677 3.65352 3.82631 3.88254 4.15689 4.24128 4.29279 4.43904 4.48795 4.57788 4.59940 4.62288 4.68575 4.75853 4.77828 4.86955 4.92086 5.03486 5.06609 5.15357 5.21789 5.24542 5.38752 5.54362 5.60349 5.85919 5.88628 6.06453 6.43929 6.55479 6.70661 6.76417 7.24131 7.40299 8.86243 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.019953 B = 0.003195 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.973656 B = 8762.143299 C = 9454.119607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.111 3.889 3 N -0.588 5.588 4 C 0.265 3.735 5 C -0.543 4.543 6 H 0.049 0.951 7 C 0.010 3.990 8 N -0.927 5.927 9 Si 0.969 3.031 10 H -0.263 1.263 11 H -0.275 1.275 12 H -0.276 1.276 13 C 0.579 3.421 14 O -0.575 6.575 15 C -0.086 4.086 16 N -0.459 5.459 17 C 0.281 3.719 18 C -0.200 4.200 19 C 0.098 3.902 20 N -0.319 5.319 21 N -0.363 5.363 22 C 0.088 3.912 23 C 0.122 3.878 24 O -0.189 6.189 25 C 0.038 3.962 26 C -0.068 4.068 27 H 0.032 0.968 28 H 0.088 0.912 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.023 0.977 33 H 0.003 0.997 34 H 0.268 0.732 35 H 0.199 0.801 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.123 0.877 39 H 0.223 0.777 40 H 0.102 0.898 41 H 0.112 0.888 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.456 -12.124 25.599 29.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.011 4.011 3 N -0.317 5.317 4 C 0.144 3.856 5 C -0.581 4.581 6 H 0.068 0.932 7 C -0.189 4.189 8 N -0.567 5.567 9 Si 0.793 3.207 10 H -0.188 1.188 11 H -0.200 1.200 12 H -0.201 1.201 13 C 0.367 3.633 14 O -0.457 6.457 15 C -0.205 4.205 16 N -0.189 5.189 17 C 0.074 3.926 18 C -0.214 4.214 19 C -0.090 4.090 20 N -0.139 5.139 21 N -0.141 5.141 22 C -0.051 4.051 23 C -0.031 4.031 24 O -0.077 6.077 25 C -0.019 4.019 26 C -0.124 4.124 27 H 0.051 0.949 28 H 0.107 0.893 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.114 0.886 32 H 0.041 0.959 33 H 0.021 0.979 34 H 0.077 0.923 35 H 0.216 0.784 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.141 0.859 39 H 0.239 0.761 40 H 0.120 0.880 41 H 0.130 0.870 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.089 -13.099 25.201 30.141 hybrid contribution 1.407 1.396 -0.591 2.068 sum -8.682 -11.703 24.611 28.601 Atomic orbital electron populations 1.21928 0.94516 1.02812 1.00399 1.21748 0.95619 0.80988 1.02724 1.48109 1.62328 1.15073 1.06177 1.18789 0.95143 0.91841 0.79829 1.21611 0.96636 1.33134 1.06738 0.93243 1.25843 1.02904 0.94377 0.95793 1.70040 1.38136 1.34982 1.13522 0.85458 0.78896 0.78923 0.77469 1.18787 1.20027 1.20101 1.17230 0.78607 0.84646 0.82809 1.90704 1.46774 1.21371 1.86822 1.21338 1.08813 0.95958 0.94432 1.71258 1.16843 1.14226 1.16572 1.23123 0.96484 0.88591 0.84365 1.17261 1.15550 0.95170 0.93424 1.24130 0.94151 0.89750 1.00921 1.77346 1.25326 1.23099 0.88160 1.48806 1.42465 1.15787 1.07056 1.22414 1.03004 0.99874 0.79829 1.23121 0.93224 0.88899 0.97841 1.84322 1.57449 1.27726 1.38169 1.23954 0.97269 0.94056 0.86637 1.20587 1.00074 0.87076 1.04653 0.94888 0.89341 0.92826 0.91779 0.88608 0.95861 0.97934 0.92291 0.78417 0.88751 0.88580 0.85911 0.76076 0.88001 0.86981 0.89566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.59 9.64 71.98 0.69 -3.90 16 2 C 0.11 4.38 5.67 86.38 0.49 4.87 16 3 N -0.59 -28.62 2.46 -830.02 -2.04 -30.66 16 4 C 0.26 15.26 5.10 85.63 0.44 15.70 16 5 C -0.54 -32.89 9.39 25.60 0.24 -32.65 16 6 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 7 C 0.01 0.59 5.46 84.65 0.46 1.05 16 8 N -0.93 -57.45 13.29 21.45 0.28 -57.17 16 9 Si 0.97 46.26 29.54 68.60 2.03 48.29 16 10 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 12 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 13 C 0.58 27.59 7.64 86.66 0.66 28.26 16 14 O -0.58 -30.79 14.48 -4.07 -0.06 -30.85 16 15 C -0.09 -3.27 6.46 40.43 0.26 -3.00 16 16 N -0.46 -15.05 6.20 -294.25 -1.83 -16.87 16 17 C 0.28 7.57 8.09 87.37 0.71 8.27 16 18 C -0.20 -4.16 6.09 -20.39 -0.12 -4.29 16 19 C 0.10 2.05 11.98 85.58 1.03 3.08 16 20 N -0.32 -6.37 12.53 -56.34 -0.71 -7.08 16 21 N -0.36 -4.76 4.00 -368.61 -1.47 -6.23 16 22 C 0.09 0.27 11.45 127.77 1.46 1.74 16 23 C 0.12 1.60 11.44 83.91 0.96 2.56 16 24 O -0.19 -4.90 10.75 -4.75 -0.05 -4.95 16 25 C 0.04 1.16 7.43 25.19 0.19 1.35 16 26 C -0.07 -1.71 9.82 71.24 0.70 -1.01 16 27 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.05 1.84 6.50 -2.39 -0.02 1.82 16 30 H 0.06 2.56 8.05 -2.39 -0.02 2.55 16 31 H 0.10 3.57 5.72 -2.39 -0.01 3.56 16 32 H 0.02 1.37 8.07 -2.39 -0.02 1.35 16 33 H 0.00 0.17 7.50 -2.38 -0.02 0.15 16 34 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 35 H 0.20 3.85 8.06 -2.91 -0.02 3.82 16 36 H 0.09 0.08 8.14 -2.38 -0.02 0.06 16 37 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.12 -0.36 8.14 -2.39 -0.02 -0.38 16 39 H 0.22 1.10 8.06 -2.91 -0.02 1.07 16 40 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 41 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.09 2.73 6.59 -2.39 -0.02 2.71 16 Total: -1.00 -81.95 361.86 5.36 -76.58 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: 1.04 Total: 6.91 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: 8.16 Total: 22.03 kcal Atomic # 7 Polarization: -112.26 SS G_CDS: -5.76 Total: -118.02 kcal Atomic # 8 Polarization: -35.69 SS G_CDS: -0.11 Total: -35.80 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -81.95 5.36 -76.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267772068.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.333 kcal (2) G-P(sol) polarization free energy of solvation -81.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds