Wall clock time and date at job start Tue Mar 31 2020 13:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.23530 * 2 1 4 4 C 1.52885 * 109.27019 * 119.48804 * 2 1 3 5 5 C 1.53654 * 109.66070 * 182.52644 * 4 2 1 6 6 N 1.46472 * 107.38765 * 308.96933 * 5 4 2 7 7 C 1.33509 * 129.87584 * 232.09338 * 6 5 4 8 8 O 1.21538 * 124.01808 * 349.10047 * 7 6 5 9 9 N 1.34165 * 111.96534 * 169.07503 * 7 6 5 10 10 C 1.40410 * 124.19067 * 184.45867 * 9 7 6 11 11 C 1.40371 * 125.96462 * 5.03101 * 10 9 7 12 12 C 1.35248 * 107.86937 * 179.97438 * 11 10 9 13 13 N 1.34966 * 107.85165 * 359.97438 * 12 11 10 14 14 C 1.46506 * 125.97819 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.46867 * 125.00430 * 14 13 12 16 16 H 1.07994 * 120.00501 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99799 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00105 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00031 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47037 * 59.99872 * 19 17 15 21 21 H 1.48502 * 109.47113 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47056 * 299.99756 * 19 17 15 23 23 N 1.31191 * 125.96664 * 184.71426 * 10 9 7 24 24 C 1.35008 * 111.61901 * 4.46474 * 9 7 6 25 25 O 1.21239 * 127.19147 * 182.33652 * 24 9 7 26 26 C 1.47951 * 123.26317 * 50.21905 * 6 5 4 27 27 H 1.09007 * 111.66362 * 71.62923 * 26 6 5 28 28 C 1.53096 * 109.20176 * 240.53971 * 2 1 3 29 29 H 1.08999 * 109.47261 * 300.51414 * 1 2 3 30 30 H 1.08999 * 109.47326 * 60.51075 * 1 2 3 31 31 H 1.09001 * 109.47006 * 180.50850 * 1 2 3 32 32 H 1.09002 * 109.43364 * 62.47838 * 4 2 1 33 33 H 1.08996 * 109.43058 * 302.57321 * 4 2 1 34 34 H 1.08997 * 109.87640 * 68.44029 * 5 4 2 35 35 H 1.08999 * 109.87138 * 189.49773 * 5 4 2 36 36 H 1.07994 * 126.06867 * 359.95304 * 11 10 9 37 37 H 1.08001 * 126.06988 * 179.97438 * 12 11 10 38 38 H 1.09003 * 109.47080 * 245.00512 * 14 13 12 39 39 H 1.09005 * 109.46912 * 5.00371 * 14 13 12 40 40 H 0.96994 * 120.00143 * 180.02562 * 18 17 15 41 41 H 1.08994 * 109.61380 * 56.56806 * 28 2 1 42 42 H 1.08998 * 109.74120 * 296.15724 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8891 1.0292 0.0000 4 6 2.0345 -0.7104 1.2562 5 6 3.5697 -0.6603 1.2972 6 7 4.0580 -1.1392 0.0019 7 6 4.9537 -2.0891 -0.2771 8 8 5.6739 -2.6094 0.5523 9 7 4.9640 -2.4015 -1.5818 10 6 5.7415 -3.4281 -2.1413 11 6 6.5388 -4.3390 -1.4306 12 6 7.1242 -5.1654 -2.3270 13 7 6.7155 -4.7958 -3.5590 14 6 7.1100 -5.4254 -4.8217 15 6 5.8773 -5.8401 -5.5829 16 1 4.8980 -5.6537 -5.1676 17 6 5.9998 -6.4584 -6.8092 18 7 7.1924 -6.6858 -7.3148 19 14 4.4718 -6.9717 -7.7531 20 1 3.6395 -5.7749 -8.0363 21 1 4.8717 -7.6111 -9.0324 22 1 3.6894 -7.9378 -6.9409 23 7 5.8451 -3.7072 -3.4190 24 6 4.1342 -1.6063 -2.2903 25 8 3.8974 -1.6671 -3.4777 26 6 3.5623 -0.6237 -1.2932 27 1 3.9135 0.3905 -1.4836 28 6 2.0335 -0.7111 -1.2588 29 1 -0.3634 0.5218 0.8853 30 1 -0.3634 0.5059 -0.8945 31 1 -0.3633 -1.0276 0.0091 32 1 1.7059 -1.7496 1.2420 33 1 1.6318 -0.2148 2.1395 34 1 3.9028 0.3643 1.4628 35 1 3.9403 -1.3047 2.0943 36 1 6.6630 -4.3736 -0.3584 37 1 7.7989 -5.9770 -2.0976 38 1 7.6837 -4.7157 -5.4179 39 1 7.7216 -6.3036 -4.6143 40 1 7.2786 -7.1204 -8.1776 41 1 1.6197 -0.2265 -2.1431 42 1 1.7275 -1.7570 -1.2382 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000329286788.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:44 Heat of formation + Delta-G solvation = 44.629469 kcal Electronic energy + Delta-G solvation = -26881.399951 eV Core-core repulsion = 23057.449255 eV Total energy + Delta-G solvation = -3823.950695 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.69980 -40.36269 -38.54915 -38.20214 -35.75103 -34.40760 -33.38427 -32.06611 -30.90839 -29.47370 -28.67387 -26.96673 -25.17376 -24.43973 -23.14589 -22.28402 -21.60556 -20.51222 -19.82118 -19.34018 -17.29191 -17.20452 -16.64072 -16.53978 -15.95898 -15.49798 -15.33370 -15.01912 -14.76302 -14.56650 -14.28780 -13.99320 -13.84964 -13.77598 -13.50334 -12.92699 -12.57098 -12.43198 -12.27371 -12.26336 -11.96829 -11.79968 -11.57521 -11.23271 -11.08011 -10.92808 -10.84147 -10.65210 -10.58687 -10.28937 -10.20222 -9.72220 -9.54922 -9.19901 -8.61638 -8.34884 -7.69352 -6.23079 -4.27762 1.68687 1.85242 2.47222 2.80355 2.91239 3.28702 3.31283 3.36932 3.56846 3.68404 3.93653 4.13484 4.28270 4.34578 4.46170 4.56223 4.69821 4.79902 5.03060 5.11559 5.12348 5.26401 5.30770 5.31065 5.37243 5.38732 5.52211 5.53644 5.63889 5.77394 5.80789 5.94923 5.98105 6.29896 6.34908 6.50006 6.81462 7.00966 7.03971 7.29502 7.53138 7.70368 7.86426 7.95638 8.12647 8.49085 8.80113 9.37896 10.85984 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.017759 B = 0.003482 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.246669 B = 8038.425519 C = 9198.129188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 H 0.078 0.922 4 C -0.135 4.135 5 C 0.153 3.847 6 N -0.622 5.622 7 C 0.716 3.284 8 O -0.529 6.529 9 N -0.491 5.491 10 C 0.247 3.753 11 C -0.278 4.278 12 C 0.057 3.943 13 N -0.315 5.315 14 C 0.258 3.742 15 C -0.530 4.530 16 H 0.069 0.931 17 C 0.064 3.936 18 N -0.896 5.896 19 Si 0.908 3.092 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.275 1.275 23 N -0.261 5.261 24 C 0.514 3.486 25 O -0.426 6.426 26 C 0.094 3.906 27 H 0.132 0.868 28 C -0.112 4.112 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.154 0.846 37 H 0.174 0.826 38 H 0.048 0.952 39 H 0.060 0.940 40 H 0.268 0.732 41 H 0.091 0.909 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.804 14.221 18.220 25.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 H 0.096 0.904 4 C -0.174 4.174 5 C 0.032 3.968 6 N -0.362 5.362 7 C 0.418 3.582 8 O -0.401 6.401 9 N -0.233 5.233 10 C -0.004 4.004 11 C -0.309 4.309 12 C -0.093 4.093 13 N -0.097 5.097 14 C 0.141 3.859 15 C -0.568 4.568 16 H 0.087 0.913 17 C -0.139 4.139 18 N -0.534 5.534 19 Si 0.735 3.265 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.200 1.200 23 N -0.090 5.090 24 C 0.299 3.701 25 O -0.290 6.290 26 C -0.013 4.013 27 H 0.150 0.850 28 C -0.150 4.150 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.115 0.885 36 H 0.172 0.828 37 H 0.191 0.809 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.109 0.891 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.753 14.068 16.629 23.865 hybrid contribution -0.390 -0.577 0.129 0.708 sum -10.144 13.491 16.758 23.785 Atomic orbital electron populations 1.21826 0.94280 1.02282 1.02077 1.21058 0.96365 0.99710 0.93701 0.90405 1.22150 0.94617 1.02166 0.98423 1.21560 0.93388 1.00135 0.81710 1.47537 1.42639 1.39021 1.06988 1.15247 0.81295 0.80346 0.81302 1.90937 1.43278 1.56924 1.48974 1.43076 1.39876 1.31181 1.09186 1.18752 0.97649 0.91776 0.92191 1.21149 1.08016 1.00847 1.00919 1.22530 1.01142 1.00608 0.85006 1.49353 1.30914 1.21631 1.07811 1.19825 0.97129 0.92656 0.76330 1.21209 0.92589 1.39282 1.03717 0.91294 1.24926 0.96824 0.95269 0.96916 1.69904 1.22188 1.42244 1.19067 0.86378 0.82424 0.78964 0.78729 1.19803 1.21006 1.20034 1.77663 1.12661 1.05288 1.13422 1.20881 0.78838 0.81804 0.88532 1.90895 1.57275 1.68076 1.12789 1.22446 0.97398 0.99155 0.82341 0.85020 1.21863 0.90596 1.02968 0.99594 0.92330 0.92238 0.92431 0.90943 0.89827 0.90465 0.88486 0.82794 0.80871 0.93460 0.92237 0.92248 0.89053 0.90451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.16 37.16 0.34 -0.41 16 2 C -0.09 -0.51 2.59 -90.63 -0.23 -0.74 16 3 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 4 C -0.14 -0.75 5.36 -26.45 -0.14 -0.89 16 5 C 0.15 1.08 7.01 -3.72 -0.03 1.05 16 6 N -0.62 -6.85 3.02 -171.84 -0.52 -7.37 16 7 C 0.72 11.26 8.29 -88.59 -0.73 10.52 16 8 O -0.53 -9.43 15.37 5.33 0.08 -9.35 16 9 N -0.49 -8.93 2.85 -66.04 -0.19 -9.12 16 10 C 0.25 5.36 7.68 -154.17 -1.18 4.17 16 11 C -0.28 -5.53 9.88 -39.84 -0.39 -5.92 16 12 C 0.06 1.13 11.44 -17.24 -0.20 0.93 16 13 N -0.31 -7.50 3.67 -62.55 -0.23 -7.73 16 14 C 0.26 6.65 6.26 -5.19 -0.03 6.62 16 15 C -0.53 -15.13 9.23 -34.44 -0.32 -15.44 16 16 H 0.07 2.06 7.81 -52.49 -0.41 1.65 16 17 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 18 N -0.90 -25.69 13.29 55.43 0.74 -24.95 16 19 Si 0.91 21.93 29.54 -169.99 -5.02 16.91 16 20 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 23 N -0.26 -6.46 11.58 31.48 0.36 -6.10 16 24 C 0.51 8.49 7.58 -10.63 -0.08 8.41 16 25 O -0.43 -8.64 17.18 5.59 0.10 -8.55 16 26 C 0.09 0.98 3.92 -67.95 -0.27 0.72 16 27 H 0.13 1.03 8.14 -51.93 -0.42 0.61 16 28 C -0.11 -0.93 4.78 -26.59 -0.13 -1.06 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.10 0.72 8.03 -51.93 -0.42 0.30 16 36 H 0.15 2.86 6.57 -52.49 -0.34 2.52 16 37 H 0.17 2.70 8.06 -52.49 -0.42 2.28 16 38 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.06 1.48 8.07 -51.93 -0.42 1.06 16 40 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 LS Contribution 352.81 15.07 5.32 5.32 Total: -1.00 -34.98 352.81 -8.65 -43.64 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -5.80 Total: -2.36 kcal Atomic # 6 Polarization: 13.14 SS G_CDS: -3.49 Total: 9.65 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: 0.16 Total: -55.26 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: 0.18 Total: -17.89 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.98 -8.65 -43.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329286788.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.265 kcal (2) G-P(sol) polarization free energy of solvation -34.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds