Wall clock time and date at job start Tue Mar 31 2020 13:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.23530 * 2 1 4 4 C 1.52885 * 109.27019 * 119.48804 * 2 1 3 5 5 C 1.53654 * 109.66070 * 182.52644 * 4 2 1 6 6 N 1.46472 * 107.38765 * 308.96933 * 5 4 2 7 7 C 1.33509 * 129.87584 * 232.09338 * 6 5 4 8 8 O 1.21538 * 124.01808 * 349.10047 * 7 6 5 9 9 N 1.34165 * 111.96534 * 169.07503 * 7 6 5 10 10 C 1.40410 * 124.19067 * 184.45867 * 9 7 6 11 11 C 1.40371 * 125.96462 * 5.03101 * 10 9 7 12 12 C 1.35248 * 107.86937 * 179.97438 * 11 10 9 13 13 N 1.34966 * 107.85165 * 359.97438 * 12 11 10 14 14 C 1.46506 * 125.97819 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.46867 * 125.00430 * 14 13 12 16 16 H 1.07994 * 120.00501 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99799 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00105 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00031 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47037 * 59.99872 * 19 17 15 21 21 H 1.48502 * 109.47113 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47056 * 299.99756 * 19 17 15 23 23 N 1.31191 * 125.96664 * 184.71426 * 10 9 7 24 24 C 1.35008 * 111.61901 * 4.46474 * 9 7 6 25 25 O 1.21239 * 127.19147 * 182.33652 * 24 9 7 26 26 C 1.47951 * 123.26317 * 50.21905 * 6 5 4 27 27 H 1.09007 * 111.66362 * 71.62923 * 26 6 5 28 28 C 1.53096 * 109.20176 * 240.53971 * 2 1 3 29 29 H 1.08999 * 109.47261 * 300.51414 * 1 2 3 30 30 H 1.08999 * 109.47326 * 60.51075 * 1 2 3 31 31 H 1.09001 * 109.47006 * 180.50850 * 1 2 3 32 32 H 1.09002 * 109.43364 * 62.47838 * 4 2 1 33 33 H 1.08996 * 109.43058 * 302.57321 * 4 2 1 34 34 H 1.08997 * 109.87640 * 68.44029 * 5 4 2 35 35 H 1.08999 * 109.87138 * 189.49773 * 5 4 2 36 36 H 1.07994 * 126.06867 * 359.95304 * 11 10 9 37 37 H 1.08001 * 126.06988 * 179.97438 * 12 11 10 38 38 H 1.09003 * 109.47080 * 245.00512 * 14 13 12 39 39 H 1.09005 * 109.46912 * 5.00371 * 14 13 12 40 40 H 0.96994 * 120.00143 * 180.02562 * 18 17 15 41 41 H 1.08994 * 109.61380 * 56.56806 * 28 2 1 42 42 H 1.08998 * 109.74120 * 296.15724 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8891 1.0292 0.0000 4 6 2.0345 -0.7104 1.2562 5 6 3.5697 -0.6603 1.2972 6 7 4.0580 -1.1392 0.0019 7 6 4.9537 -2.0891 -0.2771 8 8 5.6739 -2.6094 0.5523 9 7 4.9640 -2.4015 -1.5818 10 6 5.7415 -3.4281 -2.1413 11 6 6.5388 -4.3390 -1.4306 12 6 7.1242 -5.1654 -2.3270 13 7 6.7155 -4.7958 -3.5590 14 6 7.1100 -5.4254 -4.8217 15 6 5.8773 -5.8401 -5.5829 16 1 4.8980 -5.6537 -5.1676 17 6 5.9998 -6.4584 -6.8092 18 7 7.1924 -6.6858 -7.3148 19 14 4.4718 -6.9717 -7.7531 20 1 3.6395 -5.7749 -8.0363 21 1 4.8717 -7.6111 -9.0324 22 1 3.6894 -7.9378 -6.9409 23 7 5.8451 -3.7072 -3.4190 24 6 4.1342 -1.6063 -2.2903 25 8 3.8974 -1.6671 -3.4777 26 6 3.5623 -0.6237 -1.2932 27 1 3.9135 0.3905 -1.4836 28 6 2.0335 -0.7111 -1.2588 29 1 -0.3634 0.5218 0.8853 30 1 -0.3634 0.5059 -0.8945 31 1 -0.3633 -1.0276 0.0091 32 1 1.7059 -1.7496 1.2420 33 1 1.6318 -0.2148 2.1395 34 1 3.9028 0.3643 1.4628 35 1 3.9403 -1.3047 2.0943 36 1 6.6630 -4.3736 -0.3584 37 1 7.7989 -5.9770 -2.0976 38 1 7.6837 -4.7157 -5.4179 39 1 7.7216 -6.3036 -4.6143 40 1 7.2786 -7.1204 -8.1776 41 1 1.6197 -0.2265 -2.1431 42 1 1.7275 -1.7570 -1.2382 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000329286788.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:43 Heat of formation + Delta-G solvation = 22.685015 kcal Electronic energy + Delta-G solvation = -26882.351534 eV Core-core repulsion = 23057.449255 eV Total energy + Delta-G solvation = -3824.902278 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.90620 -41.98698 -39.87535 -39.04908 -37.06826 -35.83592 -34.96192 -33.27464 -32.30543 -31.13993 -29.44935 -28.76181 -26.38936 -25.44982 -24.65424 -23.35318 -22.92918 -21.62155 -21.12475 -20.46350 -18.82278 -18.66161 -18.35637 -17.79571 -17.36713 -16.92370 -16.41094 -16.23842 -16.03538 -15.86334 -15.49855 -15.14160 -14.83363 -14.73936 -14.65798 -14.31768 -14.13787 -14.10507 -13.73395 -13.02914 -12.96564 -12.80248 -12.77845 -12.58535 -12.38298 -12.23248 -12.18384 -12.05628 -11.81448 -11.60052 -11.56378 -11.35127 -11.05567 -10.76674 -10.16420 -9.98964 -9.41369 -8.38409 -6.51623 0.41802 0.60377 0.88441 1.33398 1.36608 1.42148 1.46109 1.72107 2.02380 2.21505 2.31984 2.80500 2.94113 3.33770 3.67023 3.78572 3.87386 3.91651 3.94382 4.01989 4.22805 4.38589 4.50491 4.60444 4.70090 4.71574 4.75967 4.83113 4.88310 4.90768 4.93716 4.97421 5.07255 5.12507 5.25714 5.38700 5.46252 5.51861 5.52105 5.52866 5.73986 5.94548 6.15644 6.24442 6.57245 6.79306 6.90471 7.17984 8.69921 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.017759 B = 0.003482 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.246669 B = 8038.425519 C = 9198.129188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 H 0.103 0.897 4 C -0.130 4.130 5 C 0.144 3.856 6 N -0.604 5.604 7 C 0.709 3.291 8 O -0.556 6.556 9 N -0.504 5.504 10 C 0.247 3.753 11 C -0.278 4.278 12 C 0.068 3.932 13 N -0.339 5.339 14 C 0.272 3.728 15 C -0.552 4.552 16 H 0.046 0.954 17 C 0.022 3.978 18 N -0.917 5.917 19 Si 0.968 3.032 20 H -0.279 1.279 21 H -0.267 1.267 22 H -0.268 1.268 23 N -0.317 5.317 24 C 0.503 3.497 25 O -0.476 6.476 26 C 0.111 3.889 27 H 0.173 0.827 28 C -0.110 4.110 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.044 0.956 32 H 0.055 0.945 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.093 0.907 36 H 0.170 0.830 37 H 0.216 0.784 38 H 0.022 0.978 39 H 0.069 0.931 40 H 0.274 0.726 41 H 0.099 0.901 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.192 15.716 20.246 27.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.101 4.101 3 H 0.122 0.878 4 C -0.168 4.168 5 C 0.025 3.975 6 N -0.342 5.342 7 C 0.411 3.589 8 O -0.430 6.430 9 N -0.247 5.247 10 C -0.006 4.006 11 C -0.309 4.309 12 C -0.080 4.080 13 N -0.122 5.122 14 C 0.154 3.846 15 C -0.591 4.591 16 H 0.064 0.936 17 C -0.179 4.179 18 N -0.556 5.556 19 Si 0.792 3.208 20 H -0.205 1.205 21 H -0.191 1.191 22 H -0.193 1.193 23 N -0.146 5.146 24 C 0.291 3.709 25 O -0.344 6.344 26 C 0.005 3.995 27 H 0.189 0.811 28 C -0.148 4.148 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.133 0.867 34 H 0.129 0.871 35 H 0.111 0.889 36 H 0.187 0.813 37 H 0.233 0.767 38 H 0.040 0.960 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.118 0.882 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.169 15.600 18.714 26.802 hybrid contribution 0.030 -0.987 -0.393 1.063 sum -11.139 14.613 18.321 25.948 Atomic orbital electron populations 1.21812 0.93726 1.01822 1.02971 1.21072 0.96692 1.00497 0.91831 0.87841 1.22154 0.93236 1.01668 0.99692 1.22044 0.94392 1.01643 0.79375 1.47810 1.40690 1.37105 1.08606 1.15443 0.82123 0.81246 0.80137 1.90901 1.44655 1.58283 1.49188 1.43531 1.39824 1.30781 1.10575 1.19209 0.97287 0.92387 0.91702 1.21383 1.07607 1.00403 1.01510 1.23257 1.00484 1.00909 0.83338 1.49121 1.32299 1.22464 1.08274 1.19430 0.95946 0.92152 0.77065 1.21329 0.92555 1.40293 1.04877 0.93584 1.25688 0.99797 0.94927 0.97441 1.69966 1.23714 1.42316 1.19554 0.85455 0.78844 0.78431 0.78047 1.20455 1.19138 1.19261 1.77568 1.14674 1.06821 1.15564 1.22027 0.77957 0.82077 0.88835 1.90855 1.58824 1.69502 1.15180 1.22658 0.98474 0.98609 0.79785 0.81050 1.21941 0.88647 1.02309 1.01917 0.90648 0.92148 0.93639 0.92626 0.86675 0.87051 0.88850 0.81252 0.76699 0.95995 0.91294 0.91653 0.88212 0.92713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.16 71.98 0.66 -0.38 16 2 C -0.08 -0.62 2.59 -10.80 -0.03 -0.65 16 3 H 0.10 0.37 8.14 -2.38 -0.02 0.35 16 4 C -0.13 -0.95 5.36 30.78 0.16 -0.79 16 5 C 0.14 1.53 7.01 86.60 0.61 2.13 16 6 N -0.60 -12.07 3.02 -816.58 -2.47 -14.54 16 7 C 0.71 21.96 8.29 179.64 1.49 23.45 16 8 O -0.56 -19.58 15.37 -3.83 -0.06 -19.63 16 9 N -0.50 -18.77 2.85 -599.75 -1.71 -20.48 16 10 C 0.25 11.05 7.68 133.24 1.02 12.08 16 11 C -0.28 -11.15 9.88 22.10 0.22 -10.93 16 12 C 0.07 2.71 11.44 83.52 0.96 3.67 16 13 N -0.34 -16.74 3.67 -351.82 -1.29 -18.03 16 14 C 0.27 14.62 6.26 85.63 0.54 15.15 16 15 C -0.55 -32.69 9.23 25.60 0.24 -32.45 16 16 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 17 C 0.02 1.28 5.46 84.66 0.46 1.74 16 18 N -0.92 -53.08 13.29 21.45 0.28 -52.80 16 19 Si 0.97 45.43 29.54 68.60 2.03 47.46 16 20 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 21 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 22 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 23 N -0.32 -16.50 11.58 -54.32 -0.63 -17.13 16 24 C 0.50 16.99 7.58 87.78 0.67 17.66 16 25 O -0.48 -20.32 17.18 -2.90 -0.05 -20.37 16 26 C 0.11 2.12 3.92 44.19 0.17 2.30 16 27 H 0.17 2.06 8.14 -2.38 -0.02 2.04 16 28 C -0.11 -1.63 4.78 30.68 0.15 -1.48 16 29 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 34 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.09 1.14 8.03 -2.39 -0.02 1.12 16 36 H 0.17 6.22 6.57 -2.91 -0.02 6.20 16 37 H 0.22 6.36 8.06 -2.91 -0.02 6.33 16 38 H 0.02 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.07 3.51 8.07 -2.38 -0.02 3.49 16 40 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 41 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.05 1.07 8.08 -2.39 -0.02 1.05 16 Total: -1.00 -80.95 352.81 4.45 -76.51 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: 1.03 Total: 7.53 kcal Atomic # 6 Polarization: 24.18 SS G_CDS: 7.31 Total: 31.49 kcal Atomic # 7 Polarization: -117.16 SS G_CDS: -5.81 Total: -122.98 kcal Atomic # 8 Polarization: -39.90 SS G_CDS: -0.11 Total: -40.01 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -80.95 4.45 -76.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329286788.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.194 kcal (2) G-P(sol) polarization free energy of solvation -80.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds