Wall clock time and date at job start Tue Mar 31 2020 13:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 110.53503 * 2 1 4 4 C 1.51587 * 110.59664 * 237.17021 * 2 1 3 5 5 O 1.21240 * 127.15429 * 61.43443 * 4 2 1 6 6 N 1.35109 * 105.50602 * 241.52297 * 4 2 1 7 7 C 1.40412 * 124.13739 * 179.97438 * 6 4 2 8 8 C 1.40366 * 125.97024 * 184.93466 * 7 6 4 9 9 C 1.35236 * 107.87076 * 179.97438 * 8 7 6 10 10 N 1.34963 * 107.85757 * 0.02562 * 9 8 7 11 11 C 1.46503 * 125.98484 * 179.97438 * 10 9 8 12 12 C 1.50694 * 109.47053 * 125.00268 * 11 10 9 13 13 H 1.07997 * 120.00156 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99917 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99746 * 0.02562 * 14 12 11 16 16 Si 1.86790 * 120.00125 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47162 * 90.00114 * 16 14 12 18 18 H 1.48504 * 109.47280 * 210.00045 * 16 14 12 19 19 H 1.48504 * 109.47270 * 330.00221 * 16 14 12 20 20 N 1.31192 * 125.96144 * 4.63002 * 7 6 4 21 21 C 1.33796 * 111.68827 * 359.86241 * 6 4 2 22 22 O 1.21538 * 123.77261 * 180.08566 * 21 6 4 23 23 N 1.34522 * 112.45774 * 0.09658 * 21 6 4 24 24 C 1.46494 * 126.69448 * 180.02562 * 23 21 6 25 25 C 1.53782 * 113.61258 * 37.45402 * 24 23 21 26 26 C 1.53781 * 87.08343 * 220.02120 * 25 24 23 27 27 C 1.53781 * 113.61410 * 299.95744 * 24 23 21 28 28 H 1.09001 * 109.47002 * 299.29557 * 1 2 3 29 29 H 1.08993 * 109.46955 * 59.29994 * 1 2 3 30 30 H 1.09000 * 109.47050 * 179.29823 * 1 2 3 31 31 H 1.08002 * 126.06590 * 0.02562 * 8 7 6 32 32 H 1.08009 * 126.06809 * 179.97438 * 9 8 7 33 33 H 1.09005 * 109.46821 * 245.00499 * 11 10 9 34 34 H 1.09005 * 109.46584 * 5.00109 * 11 10 9 35 35 H 0.96994 * 119.99635 * 180.02562 * 15 14 12 36 36 H 1.08998 * 112.85269 * 168.75921 * 24 23 21 37 37 H 1.09001 * 113.61513 * 334.56480 * 25 24 23 38 38 H 1.08999 * 113.61892 * 105.46896 * 25 24 23 39 39 H 1.08997 * 113.61037 * 270.88341 * 26 25 24 40 40 H 1.08998 * 113.61663 * 139.97865 * 26 25 24 41 41 H 1.09002 * 113.61543 * 254.52292 * 27 24 23 42 42 H 1.08997 * 113.61637 * 25.34921 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0633 -0.7693 -1.1923 5 8 1.8884 -0.5159 -2.3650 6 7 2.7715 -1.7958 -0.6725 7 6 3.4393 -2.7619 -1.4421 8 6 4.1028 -3.8956 -0.9474 9 6 4.6134 -4.5708 -2.0020 10 7 4.2885 -3.8938 -3.1234 11 6 4.6439 -4.2751 -4.4926 12 6 3.3945 -4.3600 -5.3308 13 1 2.4319 -4.1513 -4.8879 14 6 3.4801 -4.7053 -6.6629 15 7 4.6522 -4.9610 -7.2019 16 14 1.9314 -4.8112 -7.7017 17 1 1.6575 -3.4883 -8.3184 18 1 2.1200 -5.8256 -8.7698 19 1 0.7852 -5.2039 -6.8430 20 7 3.5474 -2.7654 -2.7496 21 6 2.7600 -1.7771 0.6653 22 8 3.3288 -2.5985 1.3573 23 7 2.0484 -0.7477 1.1587 24 6 1.8317 -0.4312 2.5725 25 6 3.0598 -0.6981 3.4587 26 6 2.0822 -1.2408 4.5145 27 6 1.1234 -1.5512 3.3529 28 1 -0.3633 0.5029 0.8962 29 1 -0.3633 0.5246 -0.8836 30 1 -0.3633 -1.0276 -0.0126 31 1 4.1894 -4.1790 0.0912 32 1 5.1811 -5.4885 -1.9551 33 1 5.3151 -3.5274 -4.9154 34 1 5.1411 -5.2452 -4.4821 35 1 4.7125 -5.2035 -8.1391 36 1 1.3887 0.5532 2.7229 37 1 3.7324 -1.4556 3.0563 38 1 3.5793 0.2083 3.7696 39 1 1.7086 -0.4773 5.1968 40 1 2.4456 -2.1296 5.0301 41 1 0.0794 -1.3333 3.5784 42 1 1.2653 -2.5417 2.9207 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348600469.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:10 Heat of formation + Delta-G solvation = 75.072821 kcal Electronic energy + Delta-G solvation = -26942.055453 eV Core-core repulsion = 23119.424881 eV Total energy + Delta-G solvation = -3822.630573 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.61221 -40.36077 -39.20460 -38.03371 -36.20590 -34.88333 -33.39364 -31.21431 -30.72334 -29.49294 -27.31317 -25.93816 -25.81186 -24.85334 -23.35159 -22.18253 -21.79290 -20.21641 -19.76727 -19.03102 -17.54886 -17.08740 -16.59057 -16.45040 -16.16896 -15.92122 -15.21761 -15.13888 -14.70337 -14.36494 -14.22968 -13.92784 -13.61178 -13.50203 -12.95096 -12.78740 -12.65808 -12.57646 -12.51582 -12.28163 -12.17775 -11.80225 -11.44322 -11.10972 -11.01175 -10.86353 -10.83741 -10.58637 -10.41112 -10.25100 -10.16626 -9.67998 -9.53459 -9.12389 -8.62558 -8.35365 -7.69800 -6.23675 -4.28199 1.68610 1.84466 2.47037 2.74643 2.91373 3.26677 3.32163 3.37279 3.56695 3.68221 3.95098 4.22396 4.30026 4.34173 4.46129 4.56384 4.61232 4.71876 4.90473 5.11441 5.21206 5.27834 5.33915 5.34733 5.43261 5.56546 5.61018 5.70729 5.73824 5.77499 5.82122 5.94298 6.21988 6.29652 6.42156 6.51958 6.81412 7.00877 7.04783 7.30093 7.53271 7.70140 7.85974 7.95118 8.12842 8.48702 8.79999 9.37518 10.85447 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.022095 B = 0.003328 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.948003 B = 8412.323738 C = 9220.797438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.093 3.907 3 H 0.126 0.874 4 C 0.514 3.486 5 O -0.426 6.426 6 N -0.490 5.490 7 C 0.247 3.753 8 C -0.277 4.277 9 C 0.056 3.944 10 N -0.314 5.314 11 C 0.257 3.743 12 C -0.529 4.529 13 H 0.069 0.931 14 C 0.063 3.937 15 N -0.896 5.896 16 Si 0.909 3.091 17 H -0.277 1.277 18 H -0.284 1.284 19 H -0.272 1.272 20 N -0.261 5.261 21 C 0.713 3.287 22 O -0.525 6.525 23 N -0.613 5.613 24 C 0.157 3.843 25 C -0.157 4.157 26 C -0.137 4.137 27 C -0.151 4.151 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.156 0.844 32 H 0.174 0.826 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.267 0.733 36 H 0.119 0.881 37 H 0.111 0.889 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.048 9.859 22.185 25.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.015 4.015 3 H 0.144 0.856 4 C 0.299 3.701 5 O -0.290 6.290 6 N -0.232 5.232 7 C -0.004 4.004 8 C -0.309 4.309 9 C -0.093 4.093 10 N -0.097 5.097 11 C 0.140 3.860 12 C -0.567 4.567 13 H 0.088 0.912 14 C -0.140 4.140 15 N -0.534 5.534 16 Si 0.736 3.264 17 H -0.202 1.202 18 H -0.210 1.210 19 H -0.197 1.197 20 N -0.091 5.091 21 C 0.415 3.585 22 O -0.398 6.398 23 N -0.351 5.351 24 C 0.056 3.944 25 C -0.195 4.195 26 C -0.175 4.175 27 C -0.190 4.190 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.173 0.827 32 H 0.191 0.809 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.137 0.863 37 H 0.129 0.871 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.001 10.080 20.566 23.677 hybrid contribution -0.520 -0.472 -0.028 0.703 sum -6.521 9.608 20.538 23.594 Atomic orbital electron populations 1.21937 0.90632 1.04026 1.04028 1.22155 0.97801 0.98083 0.83423 0.85612 1.21031 0.78090 0.80718 0.90226 1.90896 1.54330 1.67376 1.16380 1.43026 1.47163 1.25950 1.07024 1.18758 1.00137 0.91168 0.90362 1.21164 1.11427 0.97687 1.00586 1.22533 1.01540 0.99221 0.86054 1.49349 1.36540 1.15370 1.08426 1.19830 0.97653 0.96737 0.71765 1.21245 0.93003 1.47826 0.94624 0.91247 1.24931 0.96963 0.94616 0.97476 1.69917 1.23381 1.46361 1.13736 0.86312 0.82551 0.78026 0.79548 1.20242 1.20977 1.19695 1.77664 1.15678 1.06978 1.08757 1.15505 0.80112 0.82350 0.80530 1.90876 1.47904 1.40880 1.60121 1.47741 1.53409 1.28049 1.05914 1.22612 0.98424 0.99146 0.74236 1.23557 0.97352 1.02758 0.95833 1.22628 0.97239 1.01579 0.96031 1.23446 0.98894 1.00163 0.96462 0.90434 0.89682 0.91367 0.82688 0.80905 0.93467 0.92231 0.92308 0.86290 0.87091 0.91152 0.90088 0.90629 0.91009 0.88939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.46 37.16 0.35 -0.82 16 2 C 0.09 0.95 4.04 -68.20 -0.28 0.68 16 3 H 0.13 0.95 8.14 -51.93 -0.42 0.53 16 4 C 0.51 8.43 7.63 -10.40 -0.08 8.35 16 5 O -0.43 -8.60 17.19 5.59 0.10 -8.50 16 6 N -0.49 -8.78 2.84 -65.71 -0.19 -8.96 16 7 C 0.25 5.29 7.68 -154.17 -1.18 4.10 16 8 C -0.28 -5.44 9.88 -39.85 -0.39 -5.83 16 9 C 0.06 1.10 11.44 -17.24 -0.20 0.91 16 10 N -0.31 -7.45 3.67 -62.56 -0.23 -7.68 16 11 C 0.26 6.62 6.26 -5.19 -0.03 6.59 16 12 C -0.53 -15.06 9.23 -34.44 -0.32 -15.38 16 13 H 0.07 2.07 7.81 -52.49 -0.41 1.66 16 14 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 15 N -0.90 -25.65 13.29 55.43 0.74 -24.91 16 16 Si 0.91 21.92 29.54 -169.99 -5.02 16.90 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 20 N -0.26 -6.44 11.58 31.48 0.36 -6.07 16 21 C 0.71 10.87 7.77 -88.02 -0.68 10.19 16 22 O -0.53 -8.77 12.38 5.33 0.07 -8.70 16 23 N -0.61 -6.66 2.93 -163.91 -0.48 -7.14 16 24 C 0.16 1.22 4.56 -67.12 -0.31 0.92 16 25 C -0.16 -1.31 7.51 -25.92 -0.19 -1.51 16 26 C -0.14 -0.93 8.08 -25.92 -0.21 -1.14 16 27 C -0.15 -1.18 7.66 -25.92 -0.20 -1.38 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.16 2.82 6.52 -52.49 -0.34 2.47 16 32 H 0.17 2.68 8.06 -52.48 -0.42 2.25 16 33 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.06 1.48 8.07 -51.93 -0.42 1.06 16 35 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.12 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.11 1.29 5.78 -51.93 -0.30 0.99 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.09 0.98 7.48 -51.93 -0.39 0.59 16 LS Contribution 354.84 15.07 5.35 5.35 Total: -1.00 -34.22 354.84 -8.77 -42.99 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -5.65 Total: -0.61 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: -3.82 Total: 7.35 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: 0.20 Total: -54.78 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: 0.16 Total: -17.20 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.22 -8.77 -42.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348600469.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.064 kcal (2) G-P(sol) polarization free energy of solvation -34.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds