Wall clock time and date at job start Tue Mar 31 2020 13:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 110.53503 * 2 1 4 4 C 1.51587 * 110.59664 * 237.17021 * 2 1 3 5 5 O 1.21240 * 127.15429 * 61.43443 * 4 2 1 6 6 N 1.35109 * 105.50602 * 241.52297 * 4 2 1 7 7 C 1.40412 * 124.13739 * 179.97438 * 6 4 2 8 8 C 1.40366 * 125.97024 * 184.93466 * 7 6 4 9 9 C 1.35236 * 107.87076 * 179.97438 * 8 7 6 10 10 N 1.34963 * 107.85757 * 0.02562 * 9 8 7 11 11 C 1.46503 * 125.98484 * 179.97438 * 10 9 8 12 12 C 1.50694 * 109.47053 * 125.00268 * 11 10 9 13 13 H 1.07997 * 120.00156 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99917 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99746 * 0.02562 * 14 12 11 16 16 Si 1.86790 * 120.00125 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47162 * 90.00114 * 16 14 12 18 18 H 1.48504 * 109.47280 * 210.00045 * 16 14 12 19 19 H 1.48504 * 109.47270 * 330.00221 * 16 14 12 20 20 N 1.31192 * 125.96144 * 4.63002 * 7 6 4 21 21 C 1.33796 * 111.68827 * 359.86241 * 6 4 2 22 22 O 1.21538 * 123.77261 * 180.08566 * 21 6 4 23 23 N 1.34522 * 112.45774 * 0.09658 * 21 6 4 24 24 C 1.46494 * 126.69448 * 180.02562 * 23 21 6 25 25 C 1.53782 * 113.61258 * 37.45402 * 24 23 21 26 26 C 1.53781 * 87.08343 * 220.02120 * 25 24 23 27 27 C 1.53781 * 113.61410 * 299.95744 * 24 23 21 28 28 H 1.09001 * 109.47002 * 299.29557 * 1 2 3 29 29 H 1.08993 * 109.46955 * 59.29994 * 1 2 3 30 30 H 1.09000 * 109.47050 * 179.29823 * 1 2 3 31 31 H 1.08002 * 126.06590 * 0.02562 * 8 7 6 32 32 H 1.08009 * 126.06809 * 179.97438 * 9 8 7 33 33 H 1.09005 * 109.46821 * 245.00499 * 11 10 9 34 34 H 1.09005 * 109.46584 * 5.00109 * 11 10 9 35 35 H 0.96994 * 119.99635 * 180.02562 * 15 14 12 36 36 H 1.08998 * 112.85269 * 168.75921 * 24 23 21 37 37 H 1.09001 * 113.61513 * 334.56480 * 25 24 23 38 38 H 1.08999 * 113.61892 * 105.46896 * 25 24 23 39 39 H 1.08997 * 113.61037 * 270.88341 * 26 25 24 40 40 H 1.08998 * 113.61663 * 139.97865 * 26 25 24 41 41 H 1.09002 * 113.61543 * 254.52292 * 27 24 23 42 42 H 1.08997 * 113.61637 * 25.34921 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0633 -0.7693 -1.1923 5 8 1.8884 -0.5159 -2.3650 6 7 2.7715 -1.7958 -0.6725 7 6 3.4393 -2.7619 -1.4421 8 6 4.1028 -3.8956 -0.9474 9 6 4.6134 -4.5708 -2.0020 10 7 4.2885 -3.8938 -3.1234 11 6 4.6439 -4.2751 -4.4926 12 6 3.3945 -4.3600 -5.3308 13 1 2.4319 -4.1513 -4.8879 14 6 3.4801 -4.7053 -6.6629 15 7 4.6522 -4.9610 -7.2019 16 14 1.9314 -4.8112 -7.7017 17 1 1.6575 -3.4883 -8.3184 18 1 2.1200 -5.8256 -8.7698 19 1 0.7852 -5.2039 -6.8430 20 7 3.5474 -2.7654 -2.7496 21 6 2.7600 -1.7771 0.6653 22 8 3.3288 -2.5985 1.3573 23 7 2.0484 -0.7477 1.1587 24 6 1.8317 -0.4312 2.5725 25 6 3.0598 -0.6981 3.4587 26 6 2.0822 -1.2408 4.5145 27 6 1.1234 -1.5512 3.3529 28 1 -0.3633 0.5029 0.8962 29 1 -0.3633 0.5246 -0.8836 30 1 -0.3633 -1.0276 -0.0126 31 1 4.1894 -4.1790 0.0912 32 1 5.1811 -5.4885 -1.9551 33 1 5.3151 -3.5274 -4.9154 34 1 5.1411 -5.2452 -4.4821 35 1 4.7125 -5.2035 -8.1391 36 1 1.3887 0.5532 2.7229 37 1 3.7324 -1.4556 3.0563 38 1 3.5793 0.2083 3.7696 39 1 1.7086 -0.4773 5.1968 40 1 2.4456 -2.1296 5.0301 41 1 0.0794 -1.3333 3.5784 42 1 1.2653 -2.5417 2.9207 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348600469.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:09 Heat of formation + Delta-G solvation = 53.840148 kcal Electronic energy + Delta-G solvation = -26942.976171 eV Core-core repulsion = 23119.424881 eV Total energy + Delta-G solvation = -3823.551290 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.80472 -41.96135 -40.23769 -39.04462 -37.39628 -36.25693 -35.30159 -33.01084 -31.56434 -31.17199 -29.05340 -27.05882 -26.49453 -25.90748 -25.01857 -23.32800 -23.15062 -21.47645 -21.16104 -20.00715 -18.88726 -18.70820 -18.27982 -17.69042 -17.30122 -17.03385 -16.80799 -16.24291 -15.95686 -15.91959 -15.51374 -15.37232 -14.71204 -14.52094 -14.28531 -14.16854 -14.11951 -13.71955 -13.54655 -13.27523 -13.22996 -12.98019 -12.89735 -12.78261 -12.37467 -12.20908 -12.09935 -12.01178 -11.76525 -11.56549 -11.43014 -11.22446 -10.91529 -10.76932 -10.11556 -9.94137 -9.40610 -8.38689 -6.51778 0.44963 0.61867 0.89602 1.33293 1.35498 1.43905 1.47262 1.69214 2.02009 2.24271 2.32026 2.83679 2.93858 3.43631 3.64279 3.74015 3.85171 3.90849 3.96261 4.03971 4.06283 4.20393 4.37812 4.63678 4.70567 4.73419 4.74410 4.83229 4.87330 4.92865 4.96573 5.04602 5.11838 5.14654 5.15841 5.19673 5.42706 5.51713 5.52446 5.68266 5.76308 6.03571 6.15990 6.27595 6.57444 6.80284 6.94236 7.17885 8.69858 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.022095 B = 0.003328 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.948003 B = 8412.323738 C = 9220.797438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.110 3.890 3 H 0.168 0.832 4 C 0.501 3.499 5 O -0.477 6.477 6 N -0.504 5.504 7 C 0.247 3.753 8 C -0.277 4.277 9 C 0.067 3.933 10 N -0.339 5.339 11 C 0.272 3.728 12 C -0.551 4.551 13 H 0.046 0.954 14 C 0.022 3.978 15 N -0.917 5.917 16 Si 0.970 3.030 17 H -0.275 1.275 18 H -0.266 1.266 19 H -0.274 1.274 20 N -0.317 5.317 21 C 0.704 3.296 22 O -0.547 6.547 23 N -0.594 5.594 24 C 0.155 3.845 25 C -0.164 4.164 26 C -0.126 4.126 27 C -0.153 4.153 28 H 0.121 0.879 29 H 0.087 0.913 30 H 0.049 0.951 31 H 0.171 0.829 32 H 0.215 0.785 33 H 0.022 0.978 34 H 0.069 0.931 35 H 0.274 0.726 36 H 0.169 0.831 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.112 0.888 40 H 0.063 0.937 41 H 0.096 0.904 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.737 11.374 24.492 28.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.004 3.996 3 H 0.185 0.815 4 C 0.289 3.711 5 O -0.344 6.344 6 N -0.246 5.246 7 C -0.005 4.005 8 C -0.308 4.308 9 C -0.081 4.081 10 N -0.122 5.122 11 C 0.154 3.846 12 C -0.589 4.589 13 H 0.064 0.936 14 C -0.179 4.179 15 N -0.556 5.556 16 Si 0.794 3.206 17 H -0.201 1.201 18 H -0.190 1.190 19 H -0.199 1.199 20 N -0.147 5.147 21 C 0.406 3.594 22 O -0.421 6.421 23 N -0.332 5.332 24 C 0.055 3.945 25 C -0.203 4.203 26 C -0.164 4.164 27 C -0.192 4.192 28 H 0.140 0.860 29 H 0.106 0.894 30 H 0.068 0.932 31 H 0.188 0.812 32 H 0.232 0.768 33 H 0.040 0.960 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.186 0.814 37 H 0.091 0.909 38 H 0.107 0.893 39 H 0.130 0.870 40 H 0.082 0.918 41 H 0.115 0.885 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.701 11.616 22.938 26.840 hybrid contribution 0.036 -0.931 -0.598 1.107 sum -7.665 10.685 22.341 25.923 Atomic orbital electron populations 1.22003 0.88104 1.03590 1.06352 1.22379 0.99290 0.98250 0.79728 0.81505 1.22258 0.77042 0.80463 0.91345 1.90856 1.56056 1.68594 1.18920 1.43515 1.47205 1.25821 1.08086 1.19215 0.99246 0.92118 0.89971 1.21395 1.11061 0.97178 1.01191 1.23250 1.00448 0.99821 0.84619 1.49110 1.38166 1.16378 1.08501 1.19430 0.96211 0.96145 0.72846 1.21352 0.93009 1.48782 0.95745 0.93579 1.25697 1.00030 0.93902 0.98296 1.69977 1.24927 1.46325 1.14369 0.85384 0.78752 0.78378 0.78130 1.20056 1.19001 1.19903 1.77567 1.17916 1.08415 1.10787 1.15757 0.80769 0.83386 0.79510 1.90856 1.49056 1.42029 1.60143 1.47984 1.51646 1.26225 1.07308 1.23192 0.98216 1.01291 0.71751 1.23502 0.97461 1.02563 0.96747 1.22650 0.96106 1.01887 0.95771 1.23393 1.00622 0.98384 0.96767 0.86044 0.89376 0.93180 0.81200 0.76821 0.96018 0.91344 0.91673 0.81366 0.90913 0.89333 0.86982 0.91802 0.88523 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.46 71.98 0.68 -1.10 16 2 C 0.11 1.97 4.04 44.37 0.18 2.15 16 3 H 0.17 1.78 8.14 -2.39 -0.02 1.76 16 4 C 0.50 16.65 7.63 87.89 0.67 17.32 16 5 O -0.48 -20.13 17.19 -2.91 -0.05 -20.18 16 6 N -0.50 -18.53 2.84 -598.84 -1.70 -20.23 16 7 C 0.25 11.02 7.68 133.23 1.02 12.04 16 8 C -0.28 -11.08 9.88 22.10 0.22 -10.87 16 9 C 0.07 2.66 11.44 83.52 0.96 3.61 16 10 N -0.34 -16.74 3.67 -351.83 -1.29 -18.03 16 11 C 0.27 14.61 6.26 85.63 0.54 15.15 16 12 C -0.55 -32.58 9.23 25.60 0.24 -32.34 16 13 H 0.05 2.89 7.81 -2.91 -0.02 2.86 16 14 C 0.02 1.23 5.46 84.66 0.46 1.69 16 15 N -0.92 -53.12 13.29 21.45 0.28 -52.83 16 16 Si 0.97 45.46 29.54 68.60 2.03 47.49 16 17 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 18 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 19 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 20 N -0.32 -16.50 11.58 -54.32 -0.63 -17.13 16 21 C 0.70 21.39 7.77 179.44 1.39 22.78 16 22 O -0.55 -18.57 12.38 -3.84 -0.05 -18.62 16 23 N -0.59 -11.56 2.93 -790.91 -2.32 -13.88 16 24 C 0.15 1.81 4.56 45.52 0.21 2.01 16 25 C -0.16 -2.37 7.51 31.12 0.23 -2.13 16 26 C -0.13 -1.35 8.08 31.12 0.25 -1.10 16 27 C -0.15 -1.96 7.66 31.12 0.24 -1.72 16 28 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.17 6.22 6.52 -2.91 -0.02 6.20 16 32 H 0.22 6.37 8.06 -2.91 -0.02 6.34 16 33 H 0.02 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.07 3.49 8.07 -2.38 -0.02 3.47 16 35 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 36 H 0.17 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.07 1.67 5.78 -2.39 -0.01 1.66 16 38 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.11 0.55 8.14 -2.39 -0.02 0.54 16 40 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.06 1.17 7.48 -2.39 -0.02 1.15 16 Total: -1.00 -81.03 354.84 4.60 -76.43 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: 1.04 Total: 9.48 kcal Atomic # 6 Polarization: 20.21 SS G_CDS: 7.29 Total: 27.50 kcal Atomic # 7 Polarization: -116.44 SS G_CDS: -5.66 Total: -122.10 kcal Atomic # 8 Polarization: -38.69 SS G_CDS: -0.10 Total: -38.79 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -81.03 4.60 -76.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348600469.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.270 kcal (2) G-P(sol) polarization free energy of solvation -81.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds