Wall clock time and date at job start Tue Mar 31 2020 14:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42893 * 109.47391 * 2 1 4 4 C 1.35618 * 117.00291 * 179.97438 * 3 2 1 5 5 C 1.39303 * 119.97488 * 180.02562 * 4 3 2 6 6 N 1.31778 * 120.03419 * 179.70153 * 5 4 3 7 7 C 1.33028 * 119.97724 * 0.55356 * 6 5 4 8 8 C 1.48401 * 120.02248 * 179.71916 * 7 6 5 9 9 N 1.30764 * 126.41443 * 179.70291 * 8 7 6 10 10 O 1.21288 * 110.09561 * 180.02562 * 9 8 7 11 11 C 1.33673 * 110.03015 * 359.97438 * 10 9 8 12 12 C 1.50706 * 126.43905 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.46953 * 270.02939 * 12 11 10 14 14 C 1.53006 * 109.46623 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.46626 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.46957 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99816 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00340 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99773 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00296 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47118 * 89.99310 * 20 18 16 22 22 H 1.48494 * 109.47201 * 209.99478 * 20 18 16 23 23 H 1.48498 * 109.47011 * 329.99452 * 20 18 16 24 24 N 1.30966 * 107.12164 * 0.26420 * 11 10 9 25 25 C 1.39248 * 119.95178 * 359.45202 * 7 6 5 26 26 N 1.32089 * 119.96720 * 0.26978 * 25 7 6 27 27 H 1.09004 * 109.47283 * 299.99820 * 1 2 3 28 28 H 1.08998 * 109.47166 * 59.99682 * 1 2 3 29 29 H 1.09005 * 109.47131 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47283 * 240.00180 * 2 1 3 31 31 H 1.08998 * 109.47166 * 120.00318 * 2 1 3 32 32 H 1.07998 * 119.98341 * 359.97438 * 5 4 3 33 33 H 1.09000 * 109.46974 * 150.02688 * 12 11 10 34 34 H 1.09001 * 109.46547 * 30.02778 * 12 11 10 35 35 H 1.09000 * 109.47486 * 60.00062 * 13 12 11 36 36 H 1.09001 * 109.47362 * 299.99339 * 13 12 11 37 37 H 1.08993 * 109.46955 * 300.00075 * 14 13 12 38 38 H 1.09000 * 109.47050 * 59.99904 * 14 13 12 39 39 H 1.08993 * 109.47839 * 299.99931 * 15 14 13 40 40 H 1.09000 * 109.47160 * 60.00369 * 15 14 13 41 41 H 0.97000 * 120.00540 * 180.02562 * 19 18 16 42 42 H 1.08004 * 120.01819 * 180.29796 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3508 1.5249 0.0005 5 6 3.8827 2.8124 0.0011 6 7 5.1889 2.9864 0.0076 7 6 6.0000 1.9320 0.0024 8 6 7.4711 2.1268 0.0034 9 7 8.3788 1.1856 0.0043 10 8 9.4880 1.6762 0.0054 11 6 9.3987 3.0100 0.0049 12 6 10.5485 3.9842 0.0065 13 6 10.9357 4.3137 1.4495 14 6 12.1035 5.3023 1.4510 15 6 12.4903 5.6323 2.8941 16 6 13.6401 6.6065 2.8956 17 1 14.0534 6.9557 1.9609 18 6 14.1646 7.0521 4.0904 19 7 13.6611 6.6274 5.2286 20 14 15.5894 8.2602 4.0923 21 1 15.0615 9.6482 4.0919 22 1 16.4181 8.0462 5.3057 23 1 16.4211 8.0466 2.8808 24 7 8.1241 3.3110 0.0090 25 6 5.4675 0.6453 0.0018 26 7 4.1579 0.4732 0.0008 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.2242 3.6684 0.0007 33 1 10.2511 4.8981 -0.5077 34 1 11.4017 3.5400 -0.5063 35 1 11.2331 3.3998 1.9637 36 1 10.0825 4.7580 1.9622 37 1 12.9565 4.8577 0.9384 38 1 11.8065 6.2163 0.9367 39 1 11.6372 6.0770 3.4063 40 1 12.7872 4.7185 3.4087 41 1 14.0297 6.9411 6.0692 42 1 6.1250 -0.2115 0.0024 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350264508.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:53 Heat of formation + Delta-G solvation = 59.031173 kcal Electronic energy + Delta-G solvation = -24356.992740 eV Core-core repulsion = 20533.666549 eV Total energy + Delta-G solvation = -3823.326191 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.67447 -41.78339 -39.14275 -36.31077 -35.64746 -34.60547 -33.61597 -32.69894 -32.07175 -30.60880 -29.36137 -26.13046 -25.78300 -25.25831 -23.89044 -22.99947 -22.61435 -21.35282 -20.18038 -19.15210 -18.49610 -18.18593 -17.73158 -17.00714 -16.60083 -16.21062 -15.43869 -15.13575 -15.09235 -14.84681 -14.61865 -14.33091 -13.81846 -13.42371 -13.20260 -13.03949 -12.93881 -12.39400 -12.29385 -12.19097 -12.02144 -11.90784 -11.72006 -11.59214 -11.30188 -11.16625 -11.03270 -10.66225 -10.58669 -10.57604 -10.26174 -9.81419 -9.70586 -9.32528 -9.07302 -8.98625 -8.33728 -5.98686 -4.01248 -0.02801 0.50639 1.13704 2.14646 2.23755 2.69077 2.93569 3.24603 3.33134 3.39475 3.41026 3.42429 3.54252 3.93896 4.22204 4.44443 4.44814 4.47156 4.66845 4.79600 4.81335 4.99803 5.01968 5.15918 5.21384 5.27299 5.31001 5.37325 5.44340 5.54934 5.72379 5.80425 5.99121 6.06598 6.35105 6.45826 6.63615 6.68322 6.83449 7.10851 7.15784 7.68741 7.82553 7.97266 8.01310 8.43146 9.06169 9.62962 11.12611 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.028162 B = 0.001740 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.994066 B =16084.583432 C =16610.860826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.294 6.294 4 C 0.288 3.712 5 C 0.054 3.946 6 N -0.363 5.363 7 C 0.106 3.894 8 C 0.219 3.781 9 N -0.373 5.373 10 O 0.087 5.913 11 C 0.204 3.796 12 C -0.031 4.031 13 C -0.116 4.116 14 C -0.108 4.108 15 C 0.019 3.981 16 C -0.521 4.521 17 H 0.056 0.944 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 N -0.456 5.456 25 C 0.137 3.863 26 N -0.495 5.495 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.187 0.813 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.260 0.740 42 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.405 -14.646 -13.572 30.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.014 4.014 3 O -0.198 6.198 4 C 0.105 3.895 5 C -0.112 4.112 6 N -0.078 5.078 7 C -0.032 4.032 8 C -0.053 4.053 9 N -0.080 5.080 10 O 0.024 5.976 11 C -0.016 4.016 12 C -0.070 4.070 13 C -0.155 4.155 14 C -0.146 4.146 15 C -0.018 4.018 16 C -0.559 4.559 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.535 5.535 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 N -0.188 5.188 25 C -0.023 4.023 26 N -0.224 5.224 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.204 0.796 33 H 0.130 0.870 34 H 0.122 0.878 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.035 0.965 40 H 0.035 0.965 41 H 0.070 0.930 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -24.182 -15.047 -13.375 31.466 hybrid contribution 0.922 0.450 0.197 1.045 sum -23.260 -14.598 -13.179 30.460 Atomic orbital electron populations 1.21833 0.92407 1.03244 1.03610 1.22782 0.95297 0.80407 1.02956 1.86281 1.15508 1.31463 1.86574 1.21193 0.85274 0.91651 0.91422 1.23043 0.91085 0.95365 1.01725 1.68350 1.02709 1.32032 1.04729 1.18602 0.88626 0.90606 1.05364 1.22968 0.94247 0.85028 1.03030 1.74832 0.90521 1.21776 1.20887 1.85291 1.24814 1.22104 1.65352 1.29268 0.95291 0.83461 0.93626 1.20607 0.90245 0.94274 1.01900 1.21756 1.00662 1.01220 0.91867 1.21632 0.94773 0.96573 1.01617 1.19108 0.96356 0.96617 0.89720 1.21263 1.16393 1.26025 0.92268 0.92617 1.25031 0.97140 0.96618 0.95709 1.69964 1.41920 1.44344 0.97256 0.86603 0.82460 0.81509 0.77480 1.20691 1.21279 1.19863 1.72164 1.02153 1.24869 1.19631 1.23398 0.90298 0.97044 0.91599 1.68210 1.04859 1.32620 1.16689 0.91375 0.91425 0.89986 0.91195 0.91148 0.79602 0.87011 0.87807 0.91587 0.91376 0.92861 0.92864 0.96547 0.96544 0.93027 0.80113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 10.28 37.15 0.38 -0.23 16 2 C 0.06 0.37 6.04 37.15 0.22 0.60 16 3 O -0.29 -2.43 10.12 -18.55 -0.19 -2.62 16 4 C 0.29 2.77 7.50 -16.84 -0.13 2.64 16 5 C 0.05 0.53 11.17 -17.18 -0.19 0.34 16 6 N -0.36 -4.61 10.43 -9.44 -0.10 -4.71 16 7 C 0.11 1.35 6.75 -82.79 -0.56 0.79 16 8 C 0.22 3.12 7.91 -156.12 -1.24 1.88 16 9 N -0.37 -5.10 11.85 30.97 0.37 -4.73 16 10 O 0.09 1.15 11.29 18.03 0.20 1.35 16 11 C 0.20 2.72 7.75 -12.99 -0.10 2.62 16 12 C -0.03 -0.37 5.84 -27.88 -0.16 -0.53 16 13 C -0.12 -1.78 5.20 -26.73 -0.14 -1.91 16 14 C -0.11 -2.02 5.15 -26.73 -0.14 -2.16 16 15 C 0.02 0.48 4.97 -27.88 -0.14 0.34 16 16 C -0.52 -14.52 9.11 -34.44 -0.31 -14.84 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.90 -26.88 13.29 55.43 0.74 -26.15 16 20 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 24 N -0.46 -6.94 11.57 -9.88 -0.11 -7.06 16 25 C 0.14 1.44 10.86 -17.07 -0.19 1.25 16 26 N -0.49 -5.03 9.38 -12.85 -0.12 -5.15 16 27 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.07 0.42 8.11 -51.93 -0.42 0.00 16 31 H 0.07 0.44 8.11 -51.93 -0.42 0.02 16 32 H 0.19 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.18 1.57 7.86 -52.48 -0.41 1.15 16 LS Contribution 370.54 15.07 5.58 5.58 Total: -1.00 -32.90 370.54 -7.30 -40.20 By element: Atomic # 1 Polarization: 0.37 SS G_CDS: -5.87 Total: -5.50 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -2.78 Total: -7.70 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: 0.77 Total: -47.79 kcal Atomic # 8 Polarization: -1.28 SS G_CDS: 0.02 Total: -1.26 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.90 -7.30 -40.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350264508.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.229 kcal (2) G-P(sol) polarization free energy of solvation -32.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds