Wall clock time and date at job start Tue Mar 31 2020 14:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42893 * 109.47391 * 2 1 4 4 C 1.35618 * 117.00291 * 179.97438 * 3 2 1 5 5 C 1.39303 * 119.97488 * 180.02562 * 4 3 2 6 6 N 1.31778 * 120.03419 * 179.70153 * 5 4 3 7 7 C 1.33028 * 119.97724 * 0.55356 * 6 5 4 8 8 C 1.48401 * 120.02248 * 179.71916 * 7 6 5 9 9 N 1.30764 * 126.41443 * 179.70291 * 8 7 6 10 10 O 1.21288 * 110.09561 * 180.02562 * 9 8 7 11 11 C 1.33673 * 110.03015 * 359.97438 * 10 9 8 12 12 C 1.50706 * 126.43905 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.46953 * 270.02939 * 12 11 10 14 14 C 1.53006 * 109.46623 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.46626 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.46957 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99816 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00340 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99773 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00296 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47118 * 89.99310 * 20 18 16 22 22 H 1.48494 * 109.47201 * 209.99478 * 20 18 16 23 23 H 1.48498 * 109.47011 * 329.99452 * 20 18 16 24 24 N 1.30966 * 107.12164 * 0.26420 * 11 10 9 25 25 C 1.39248 * 119.95178 * 359.45202 * 7 6 5 26 26 N 1.32089 * 119.96720 * 0.26978 * 25 7 6 27 27 H 1.09004 * 109.47283 * 299.99820 * 1 2 3 28 28 H 1.08998 * 109.47166 * 59.99682 * 1 2 3 29 29 H 1.09005 * 109.47131 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47283 * 240.00180 * 2 1 3 31 31 H 1.08998 * 109.47166 * 120.00318 * 2 1 3 32 32 H 1.07998 * 119.98341 * 359.97438 * 5 4 3 33 33 H 1.09000 * 109.46974 * 150.02688 * 12 11 10 34 34 H 1.09001 * 109.46547 * 30.02778 * 12 11 10 35 35 H 1.09000 * 109.47486 * 60.00062 * 13 12 11 36 36 H 1.09001 * 109.47362 * 299.99339 * 13 12 11 37 37 H 1.08993 * 109.46955 * 300.00075 * 14 13 12 38 38 H 1.09000 * 109.47050 * 59.99904 * 14 13 12 39 39 H 1.08993 * 109.47839 * 299.99931 * 15 14 13 40 40 H 1.09000 * 109.47160 * 60.00369 * 15 14 13 41 41 H 0.97000 * 120.00540 * 180.02562 * 19 18 16 42 42 H 1.08004 * 120.01819 * 180.29796 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3508 1.5249 0.0005 5 6 3.8827 2.8124 0.0011 6 7 5.1889 2.9864 0.0076 7 6 6.0000 1.9320 0.0024 8 6 7.4711 2.1268 0.0034 9 7 8.3788 1.1856 0.0043 10 8 9.4880 1.6762 0.0054 11 6 9.3987 3.0100 0.0049 12 6 10.5485 3.9842 0.0065 13 6 10.9357 4.3137 1.4495 14 6 12.1035 5.3023 1.4510 15 6 12.4903 5.6323 2.8941 16 6 13.6401 6.6065 2.8956 17 1 14.0534 6.9557 1.9609 18 6 14.1646 7.0521 4.0904 19 7 13.6611 6.6274 5.2286 20 14 15.5894 8.2602 4.0923 21 1 15.0615 9.6482 4.0919 22 1 16.4181 8.0462 5.3057 23 1 16.4211 8.0466 2.8808 24 7 8.1241 3.3110 0.0090 25 6 5.4675 0.6453 0.0018 26 7 4.1579 0.4732 0.0008 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.2242 3.6684 0.0007 33 1 10.2511 4.8981 -0.5077 34 1 11.4017 3.5400 -0.5063 35 1 11.2331 3.3998 1.9637 36 1 10.0825 4.7580 1.9622 37 1 12.9565 4.8577 0.9384 38 1 11.8065 6.2163 0.9367 39 1 11.6372 6.0770 3.4063 40 1 12.7872 4.7185 3.4087 41 1 14.0297 6.9411 6.0692 42 1 6.1250 -0.2115 0.0024 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350264508.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:52 Heat of formation + Delta-G solvation = 35.559143 kcal Electronic energy + Delta-G solvation = -24358.010563 eV Core-core repulsion = 20533.666549 eV Total energy + Delta-G solvation = -3824.344014 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -46.71595 -42.56501 -39.83153 -37.48056 -36.85204 -35.45122 -35.19702 -33.90519 -33.03132 -31.52989 -30.76962 -27.54186 -26.82240 -26.14308 -24.93122 -24.17060 -23.50057 -22.47502 -21.76569 -19.83483 -19.37767 -19.24770 -18.64781 -18.34550 -17.65007 -17.53938 -16.53719 -16.35321 -16.13451 -15.80174 -15.68056 -15.46209 -14.65385 -14.62441 -14.20840 -14.02001 -13.70818 -13.65938 -13.53319 -13.44649 -13.08430 -12.99203 -12.81088 -12.50396 -12.46433 -12.36701 -12.28504 -12.15646 -12.09967 -11.87549 -11.48112 -11.32812 -11.22034 -10.91955 -10.61872 -10.50729 -9.82244 -8.15749 -6.26454 -0.88719 -0.29158 0.12891 1.14053 1.43648 1.44696 1.55349 1.55726 1.68773 2.04109 2.41048 2.44703 2.52760 2.77300 3.12571 3.17985 3.39902 3.72592 3.86485 4.02146 4.06254 4.10461 4.12417 4.23595 4.30380 4.38073 4.54106 4.64110 4.67956 4.82270 4.84409 4.91642 4.91778 4.93614 5.19548 5.20337 5.35508 5.36683 5.60904 5.78511 5.84250 5.85096 5.93453 6.30086 6.36080 6.92572 6.94236 7.43117 8.96099 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.028162 B = 0.001740 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.994066 B =16084.583432 C =16610.860826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 O -0.293 6.293 4 C 0.294 3.706 5 C 0.059 3.941 6 N -0.390 5.390 7 C 0.080 3.920 8 C 0.212 3.788 9 N -0.376 5.376 10 O 0.088 5.912 11 C 0.208 3.792 12 C -0.020 4.020 13 C -0.107 4.107 14 C -0.095 4.095 15 C 0.017 3.983 16 C -0.540 4.540 17 H 0.066 0.934 18 C -0.005 4.005 19 N -0.937 5.937 20 Si 0.964 3.036 21 H -0.274 1.274 22 H -0.286 1.286 23 H -0.259 1.259 24 N -0.484 5.484 25 C 0.145 3.855 26 N -0.500 5.500 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.100 0.900 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.214 0.786 33 H 0.126 0.874 34 H 0.137 0.863 35 H 0.063 0.937 36 H 0.050 0.950 37 H 0.069 0.931 38 H 0.061 0.939 39 H -0.014 1.014 40 H -0.009 1.009 41 H 0.261 0.739 42 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.709 -14.729 -15.142 31.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.021 4.021 3 O -0.197 6.197 4 C 0.109 3.891 5 C -0.109 4.109 6 N -0.106 5.106 7 C -0.057 4.057 8 C -0.059 4.059 9 N -0.084 5.084 10 O 0.026 5.974 11 C -0.012 4.012 12 C -0.058 4.058 13 C -0.146 4.146 14 C -0.133 4.133 15 C -0.020 4.020 16 C -0.578 4.578 17 H 0.084 0.916 18 C -0.202 4.202 19 N -0.577 5.577 20 Si 0.789 3.211 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.183 1.183 24 N -0.217 5.217 25 C -0.015 4.015 26 N -0.229 5.229 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.118 0.882 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.231 0.769 33 H 0.144 0.856 34 H 0.155 0.845 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.004 0.996 40 H 0.009 0.991 41 H 0.070 0.930 42 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -24.482 -15.146 -14.966 32.446 hybrid contribution 0.867 0.430 0.714 1.202 sum -23.615 -14.717 -14.252 31.263 Atomic orbital electron populations 1.21852 0.90551 1.04487 1.03690 1.23025 0.96727 0.79349 1.02967 1.86303 1.14567 1.32882 1.85990 1.21336 0.85821 0.91616 0.90302 1.23471 0.90469 0.96416 1.00533 1.68295 1.03933 1.32678 1.05716 1.18673 0.88101 0.91497 1.07437 1.23286 0.95120 0.84796 1.02701 1.74805 0.90544 1.21760 1.21295 1.85271 1.24704 1.22099 1.65335 1.29452 0.95191 0.83601 0.92907 1.20574 0.90908 0.94880 0.99487 1.21524 0.98633 1.00000 0.94404 1.21416 0.96641 0.98028 0.97198 1.19075 0.94647 0.94809 0.93495 1.21784 1.16986 1.26281 0.92745 0.91584 1.26011 1.00150 0.98658 0.95351 1.70112 1.43683 1.45978 0.97976 0.85458 0.78886 0.78878 0.77897 1.20005 1.21128 1.18327 1.72151 1.03112 1.25757 1.20656 1.23530 0.90568 0.96691 0.90694 1.68267 1.04692 1.32859 1.17090 0.91379 0.91225 0.88166 0.91054 0.91273 0.76913 0.85603 0.84529 0.91860 0.93136 0.91215 0.92015 0.99608 0.99071 0.92991 0.78747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.28 71.98 0.74 -0.16 16 2 C 0.05 0.59 6.04 71.98 0.43 1.02 16 3 O -0.29 -4.44 10.12 -89.30 -0.90 -5.35 16 4 C 0.29 5.35 7.50 84.84 0.64 5.98 16 5 C 0.06 1.09 11.17 84.96 0.95 2.04 16 6 N -0.39 -9.88 10.43 -183.79 -1.92 -11.79 16 7 C 0.08 2.04 6.75 41.92 0.28 2.32 16 8 C 0.21 6.06 7.91 137.29 1.09 7.15 16 9 N -0.38 -10.16 11.85 -59.14 -0.70 -10.86 16 10 O 0.09 2.26 11.29 74.57 0.84 3.10 16 11 C 0.21 5.36 7.75 88.36 0.68 6.05 16 12 C -0.02 -0.43 5.84 29.85 0.17 -0.25 16 13 C -0.11 -3.19 5.20 30.60 0.16 -3.03 16 14 C -0.10 -3.47 5.15 30.60 0.16 -3.32 16 15 C 0.02 0.87 4.97 29.85 0.15 1.01 16 16 C -0.54 -30.15 9.11 25.60 0.23 -29.92 16 17 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 18 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 19 N -0.94 -57.44 13.29 21.45 0.28 -57.15 16 20 Si 0.96 43.96 29.54 68.60 2.03 45.98 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 22 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 23 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 24 N -0.48 -14.65 11.57 -302.52 -3.50 -18.15 16 25 C 0.15 2.99 10.86 84.90 0.92 3.91 16 26 N -0.50 -9.77 9.38 -307.30 -2.88 -12.65 16 27 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 28 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.10 0.26 8.14 -2.38 -0.02 0.24 16 30 H 0.07 0.77 8.11 -2.38 -0.02 0.75 16 31 H 0.07 0.78 8.11 -2.39 -0.02 0.76 16 32 H 0.21 2.51 8.06 -2.91 -0.02 2.49 16 33 H 0.13 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.14 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 39 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 40 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 41 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 42 H 0.20 3.28 7.86 -2.91 -0.02 3.26 16 Total: -1.00 -72.09 370.54 1.35 -70.74 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: 1.03 Total: 3.13 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: 7.07 Total: -6.99 kcal Atomic # 7 Polarization: -101.89 SS G_CDS: -8.71 Total: -110.61 kcal Atomic # 8 Polarization: -2.19 SS G_CDS: -0.06 Total: -2.25 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -72.09 1.35 -70.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350264508.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.296 kcal (2) G-P(sol) polarization free energy of solvation -72.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds