Wall clock time and date at job start Tue Mar 31 2020 14:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50709 * 119.99763 * 2 1 4 4 N 1.46497 * 109.46792 * 125.00233 * 3 2 1 5 5 C 1.36742 * 127.14133 * 264.01202 * 4 3 2 6 6 C 1.50702 * 126.34182 * 359.94749 * 5 4 3 7 7 C 1.53002 * 109.47258 * 89.99997 * 6 5 4 8 8 F 1.39904 * 109.46769 * 59.99829 * 7 6 5 9 9 F 1.39892 * 109.46947 * 179.97438 * 7 6 5 10 10 F 1.39903 * 109.46914 * 300.00164 * 7 6 5 11 11 N 1.30292 * 107.30762 * 179.97438 * 5 4 3 12 12 N 1.28527 * 110.05470 * 359.72855 * 11 5 4 13 13 C 1.31215 * 109.85965 * 0.45032 * 12 11 5 14 14 N 1.38575 * 126.47441 * 179.82051 * 13 12 11 15 15 C 1.46898 * 111.00264 * 289.39452 * 14 13 12 16 16 C 1.46899 * 110.99867 * 53.34555 * 14 13 12 17 17 H 1.09001 * 109.47720 * 300.00253 * 16 14 13 18 18 C 1.53001 * 109.46963 * 60.00112 * 16 14 13 19 19 C 1.50698 * 109.47478 * 179.97438 * 16 14 13 20 20 H 1.08002 * 119.99845 * 353.92885 * 19 16 14 21 21 C 1.37875 * 120.00331 * 173.92874 * 19 16 14 22 22 N 1.31520 * 120.00147 * 153.47486 * 21 19 16 23 23 Si 1.86794 * 120.00058 * 333.47197 * 21 19 16 24 24 H 1.48501 * 109.47552 * 180.02562 * 23 21 19 25 25 H 1.48508 * 109.47122 * 300.00293 * 23 21 19 26 26 H 1.48500 * 109.47358 * 59.99736 * 23 21 19 27 27 H 1.08002 * 120.00000 * 359.97438 * 1 2 3 28 28 H 1.08004 * 120.00228 * 180.02562 * 1 2 3 29 29 H 1.07996 * 120.00439 * 180.02562 * 2 1 3 30 30 H 1.08995 * 109.47361 * 5.00192 * 3 2 1 31 31 H 1.09000 * 109.46682 * 245.00218 * 3 2 1 32 32 H 1.09006 * 109.46970 * 210.00003 * 6 5 4 33 33 H 1.09000 * 109.47208 * 330.00010 * 6 5 4 34 34 H 1.09001 * 109.47248 * 189.58099 * 15 14 13 35 35 H 1.09001 * 109.46863 * 309.57965 * 15 14 13 36 36 H 1.09006 * 109.47291 * 69.57963 * 15 14 13 37 37 H 1.09009 * 109.47063 * 172.00830 * 18 16 14 38 38 H 1.09001 * 109.47162 * 292.00912 * 18 16 14 39 39 H 1.08994 * 109.47293 * 52.00849 * 18 16 14 40 40 H 0.97001 * 119.99861 * 354.88527 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.7837 1.8947 2.3598 6 6 1.5388 2.6138 2.8117 7 6 0.5707 1.6106 3.4422 8 9 1.1825 1.0008 4.5427 9 9 -0.5846 2.2783 3.8621 10 9 0.2296 0.6356 2.4987 11 7 3.8595 1.6945 3.0670 12 7 4.7262 1.0435 2.3762 13 6 4.2494 0.7999 1.1782 14 7 4.8966 0.1246 0.1557 15 6 6.0006 0.9263 -0.3885 16 6 5.3738 -1.1879 0.6111 17 1 6.0713 -1.0542 1.4379 18 6 4.1842 -2.0290 1.0786 19 6 6.0700 -1.8914 -0.5253 20 1 6.0650 -1.4563 -1.5138 21 6 6.7132 -3.0905 -0.3032 22 7 6.8598 -3.9504 -1.2875 23 14 7.3768 -3.4938 1.3957 24 1 8.0203 -4.8319 1.3711 25 1 8.3778 -2.4708 1.7919 26 1 6.2603 -3.4989 2.3748 27 1 -0.5400 0.9353 0.0004 28 1 -0.5401 -0.9353 0.0004 29 1 1.8500 -0.9352 -0.0004 30 1 1.3585 2.1317 0.0896 31 1 2.6212 1.4027 -0.9314 32 1 1.8046 3.3735 3.5468 33 1 1.0621 3.0889 1.9542 34 1 6.3814 0.4533 -1.2937 35 1 5.6403 1.9273 -0.6256 36 1 6.7996 0.9933 0.3501 37 1 4.5166 -3.0471 1.2819 38 1 3.7668 -1.5947 1.9870 39 1 3.4218 -2.0445 0.2998 40 1 6.4515 -3.7748 -2.1497 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564962150.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:06 Heat of formation + Delta-G solvation = -35.650892 kcal Electronic energy + Delta-G solvation = -28652.588994 eV Core-core repulsion = 24283.300340 eV Total energy + Delta-G solvation = -4369.288653 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.23997 -47.78621 -47.66073 -42.84593 -37.35066 -36.18695 -33.52643 -32.99457 -32.26999 -30.12112 -28.50809 -26.90284 -25.36443 -24.44320 -24.06315 -21.89969 -21.14419 -20.09759 -19.47363 -18.69479 -18.59149 -17.79465 -17.53678 -16.85252 -16.05658 -15.75895 -14.90510 -14.85931 -14.63004 -14.41962 -14.22067 -14.13616 -13.86395 -13.84674 -13.65117 -13.47789 -13.34937 -13.26043 -12.54621 -12.42681 -12.23111 -12.08949 -11.81657 -11.62257 -11.40113 -11.07393 -10.78725 -10.54223 -10.44231 -10.22795 -10.00474 -9.90923 -9.57475 -9.10278 -8.84649 -8.38652 -7.90994 -6.58945 -4.14995 1.62172 1.91715 2.50669 2.68494 3.04762 3.40879 3.46792 3.55574 3.61815 3.67864 3.78448 4.27221 4.35350 4.45519 4.46561 4.59914 4.70544 4.91948 5.10221 5.15051 5.32109 5.44894 5.59182 5.76315 5.87531 6.11529 6.13269 6.30521 6.36567 6.45725 6.52450 6.53346 6.61624 6.76155 6.87848 7.16022 7.52951 7.61950 8.15775 8.31502 8.83347 8.90386 9.47766 10.79855 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018525 B = 0.004502 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.132531 B = 6217.731284 C = 6398.157625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.171 4.171 3 C 0.144 3.856 4 N -0.457 5.457 5 C 0.134 3.866 6 C -0.066 4.066 7 C 0.453 3.547 8 F -0.172 7.172 9 F -0.183 7.183 10 F -0.172 7.172 11 N -0.259 5.259 12 N -0.316 5.316 13 C 0.392 3.608 14 N -0.464 5.464 15 C 0.053 3.947 16 C 0.207 3.793 17 H 0.014 0.986 18 C -0.138 4.138 19 C -0.608 4.608 20 H 0.069 0.931 21 C 0.048 3.952 22 N -0.887 5.887 23 Si 1.025 2.975 24 H -0.283 1.283 25 H -0.280 1.280 26 H -0.278 1.278 27 H 0.095 0.905 28 H 0.104 0.896 29 H 0.125 0.875 30 H 0.090 0.910 31 H 0.110 0.890 32 H 0.141 0.859 33 H 0.122 0.878 34 H 0.092 0.908 35 H 0.044 0.956 36 H 0.038 0.962 37 H 0.059 0.941 38 H 0.016 0.984 39 H 0.049 0.951 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.949 14.143 3.763 20.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.189 4.189 3 C 0.021 3.979 4 N -0.150 5.150 5 C -0.133 4.133 6 C -0.107 4.107 7 C 0.398 3.602 8 F -0.153 7.153 9 F -0.164 7.164 10 F -0.154 7.154 11 N -0.101 5.101 12 N -0.160 5.160 13 C 0.037 3.963 14 N -0.190 5.190 15 C -0.094 4.094 16 C 0.101 3.899 17 H 0.032 0.968 18 C -0.196 4.196 19 C -0.645 4.645 20 H 0.087 0.913 21 C -0.160 4.160 22 N -0.519 5.519 23 Si 0.853 3.147 24 H -0.208 1.208 25 H -0.206 1.206 26 H -0.204 1.204 27 H 0.113 0.887 28 H 0.122 0.878 29 H 0.143 0.857 30 H 0.108 0.892 31 H 0.128 0.872 32 H 0.159 0.841 33 H 0.140 0.860 34 H 0.110 0.890 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.078 0.922 38 H 0.036 0.964 39 H 0.068 0.932 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.463 12.914 5.359 19.410 hybrid contribution -1.493 0.988 -1.329 2.230 sum -14.956 13.902 4.029 20.813 Atomic orbital electron populations 1.23803 0.95374 1.02044 0.98662 1.23173 0.96108 0.98546 1.01114 1.20908 0.91347 0.97106 0.88506 1.46365 1.13750 1.42479 1.12389 1.23451 0.99213 1.06048 0.84574 1.20997 0.89227 0.96055 1.04415 1.20402 0.80426 0.81994 0.77424 1.93258 1.82590 1.84448 1.55013 1.93190 1.52142 1.80339 1.90773 1.93304 1.92924 1.65118 1.64035 1.73995 0.98194 1.12778 1.25092 1.74778 1.23013 1.15991 1.02209 1.22981 0.84479 0.95922 0.92908 1.59215 1.29428 1.04152 1.26254 1.22203 0.91228 0.94828 1.01164 1.19703 0.92396 0.81417 0.96396 0.96847 1.22156 0.99317 1.00453 0.97690 1.21759 1.39243 1.08203 0.95341 0.91340 1.25543 0.94398 0.91711 1.04342 1.70871 1.42958 1.33348 1.04708 0.84268 0.77692 0.76660 0.76102 1.20843 1.20618 1.20439 0.88688 0.87817 0.85682 0.89199 0.87229 0.84119 0.85960 0.88963 0.93698 0.94351 0.92169 0.96446 0.93230 0.91840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 11.95 29.02 0.35 -1.27 16 2 C -0.17 -2.14 8.90 -36.02 -0.32 -2.46 16 3 C 0.14 1.67 6.51 -5.19 -0.03 1.64 16 4 N -0.46 -6.97 2.79 -115.37 -0.32 -7.29 16 5 C 0.13 1.95 6.79 -154.01 -1.05 0.91 16 6 C -0.07 -0.62 5.63 -27.88 -0.16 -0.78 16 7 C 0.45 4.98 3.15 37.16 0.12 5.09 16 8 F -0.17 -2.39 17.02 2.25 0.04 -2.35 16 9 F -0.18 -1.79 17.32 2.25 0.04 -1.75 16 10 F -0.17 -2.09 13.42 2.25 0.03 -2.06 16 11 N -0.26 -4.80 12.18 32.99 0.40 -4.40 16 12 N -0.32 -6.63 11.98 30.31 0.36 -6.27 16 13 C 0.39 7.53 5.21 -318.88 -1.66 5.87 16 14 N -0.46 -9.48 4.66 -176.08 -0.82 -10.30 16 15 C 0.05 0.99 9.11 60.06 0.55 1.54 16 16 C 0.21 4.91 1.56 -68.87 -0.11 4.80 16 17 H 0.01 0.36 6.53 -51.93 -0.34 0.02 16 18 C -0.14 -3.16 8.68 37.16 0.32 -2.84 16 19 C -0.61 -16.06 8.02 -34.44 -0.28 -16.34 16 20 H 0.07 1.91 6.90 -52.49 -0.36 1.54 16 21 C 0.05 1.33 5.12 -17.82 -0.09 1.24 16 22 N -0.89 -25.91 13.70 55.43 0.76 -25.15 16 23 Si 1.03 25.05 26.57 -169.99 -4.52 20.53 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.28 -6.58 6.47 56.52 0.37 -6.22 16 27 H 0.09 0.75 7.84 -52.49 -0.41 0.34 16 28 H 0.10 1.01 8.06 -52.48 -0.42 0.59 16 29 H 0.13 1.95 6.35 -52.49 -0.33 1.62 16 30 H 0.09 0.71 6.74 -51.93 -0.35 0.36 16 31 H 0.11 1.28 8.14 -51.93 -0.42 0.85 16 32 H 0.14 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.12 0.71 7.17 -51.93 -0.37 0.34 16 34 H 0.09 1.78 6.57 -51.93 -0.34 1.44 16 35 H 0.04 0.71 8.06 -51.93 -0.42 0.29 16 36 H 0.04 0.75 8.13 -51.93 -0.42 0.33 16 37 H 0.06 1.43 5.92 -51.92 -0.31 1.13 16 38 H 0.02 0.38 7.51 -51.93 -0.39 -0.01 16 39 H 0.05 1.08 6.43 -51.93 -0.33 0.74 16 40 H 0.27 7.85 8.73 -40.82 -0.36 7.49 16 LS Contribution 338.16 15.07 5.10 5.10 Total: -1.00 -31.70 338.16 -6.13 -37.83 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -4.84 Total: -1.29 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -2.36 Total: -2.59 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: 0.38 Total: -53.41 kcal Atomic # 9 Polarization: -6.27 SS G_CDS: 0.11 Total: -6.16 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -4.52 Total: 20.53 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.70 -6.13 -37.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564962150.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.175 kcal (2) G-P(sol) polarization free energy of solvation -31.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds