Wall clock time and date at job start Tue Mar 31 2020 14:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50709 * 119.99763 * 2 1 4 4 N 1.46497 * 109.46792 * 125.00233 * 3 2 1 5 5 C 1.36742 * 127.14133 * 264.01202 * 4 3 2 6 6 C 1.50702 * 126.34182 * 359.94749 * 5 4 3 7 7 C 1.53002 * 109.47258 * 89.99997 * 6 5 4 8 8 F 1.39904 * 109.46769 * 59.99829 * 7 6 5 9 9 F 1.39892 * 109.46947 * 179.97438 * 7 6 5 10 10 F 1.39903 * 109.46914 * 300.00164 * 7 6 5 11 11 N 1.30292 * 107.30762 * 179.97438 * 5 4 3 12 12 N 1.28527 * 110.05470 * 359.72855 * 11 5 4 13 13 C 1.31215 * 109.85965 * 0.45032 * 12 11 5 14 14 N 1.38575 * 126.47441 * 179.82051 * 13 12 11 15 15 C 1.46898 * 111.00264 * 289.39452 * 14 13 12 16 16 C 1.46899 * 110.99867 * 53.34555 * 14 13 12 17 17 H 1.09001 * 109.47720 * 300.00253 * 16 14 13 18 18 C 1.53001 * 109.46963 * 60.00112 * 16 14 13 19 19 C 1.50698 * 109.47478 * 179.97438 * 16 14 13 20 20 H 1.08002 * 119.99845 * 353.92885 * 19 16 14 21 21 C 1.37875 * 120.00331 * 173.92874 * 19 16 14 22 22 N 1.31520 * 120.00147 * 153.47486 * 21 19 16 23 23 Si 1.86794 * 120.00058 * 333.47197 * 21 19 16 24 24 H 1.48501 * 109.47552 * 180.02562 * 23 21 19 25 25 H 1.48508 * 109.47122 * 300.00293 * 23 21 19 26 26 H 1.48500 * 109.47358 * 59.99736 * 23 21 19 27 27 H 1.08002 * 120.00000 * 359.97438 * 1 2 3 28 28 H 1.08004 * 120.00228 * 180.02562 * 1 2 3 29 29 H 1.07996 * 120.00439 * 180.02562 * 2 1 3 30 30 H 1.08995 * 109.47361 * 5.00192 * 3 2 1 31 31 H 1.09000 * 109.46682 * 245.00218 * 3 2 1 32 32 H 1.09006 * 109.46970 * 210.00003 * 6 5 4 33 33 H 1.09000 * 109.47208 * 330.00010 * 6 5 4 34 34 H 1.09001 * 109.47248 * 189.58099 * 15 14 13 35 35 H 1.09001 * 109.46863 * 309.57965 * 15 14 13 36 36 H 1.09006 * 109.47291 * 69.57963 * 15 14 13 37 37 H 1.09009 * 109.47063 * 172.00830 * 18 16 14 38 38 H 1.09001 * 109.47162 * 292.00912 * 18 16 14 39 39 H 1.08994 * 109.47293 * 52.00849 * 18 16 14 40 40 H 0.97001 * 119.99861 * 354.88527 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.7837 1.8947 2.3598 6 6 1.5388 2.6138 2.8117 7 6 0.5707 1.6106 3.4422 8 9 1.1825 1.0008 4.5427 9 9 -0.5846 2.2783 3.8621 10 9 0.2296 0.6356 2.4987 11 7 3.8595 1.6945 3.0670 12 7 4.7262 1.0435 2.3762 13 6 4.2494 0.7999 1.1782 14 7 4.8966 0.1246 0.1557 15 6 6.0006 0.9263 -0.3885 16 6 5.3738 -1.1879 0.6111 17 1 6.0713 -1.0542 1.4379 18 6 4.1842 -2.0290 1.0786 19 6 6.0700 -1.8914 -0.5253 20 1 6.0650 -1.4563 -1.5138 21 6 6.7132 -3.0905 -0.3032 22 7 6.8598 -3.9504 -1.2875 23 14 7.3768 -3.4938 1.3957 24 1 8.0203 -4.8319 1.3711 25 1 8.3778 -2.4708 1.7919 26 1 6.2603 -3.4989 2.3748 27 1 -0.5400 0.9353 0.0004 28 1 -0.5401 -0.9353 0.0004 29 1 1.8500 -0.9352 -0.0004 30 1 1.3585 2.1317 0.0896 31 1 2.6212 1.4027 -0.9314 32 1 1.8046 3.3735 3.5468 33 1 1.0621 3.0889 1.9542 34 1 6.3814 0.4533 -1.2937 35 1 5.6403 1.9273 -0.6256 36 1 6.7996 0.9933 0.3501 37 1 4.5166 -3.0471 1.2819 38 1 3.7668 -1.5947 1.9870 39 1 3.4218 -2.0445 0.2998 40 1 6.4515 -3.7748 -2.1497 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564962150.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:05 Heat of formation + Delta-G solvation = -55.149275 kcal Electronic energy + Delta-G solvation = -28653.434507 eV Core-core repulsion = 24283.300340 eV Total energy + Delta-G solvation = -4370.134167 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.10535 -48.60895 -48.59767 -44.14269 -39.01396 -37.23163 -35.10881 -34.30935 -33.47867 -31.96287 -29.79425 -27.93212 -27.09493 -26.19531 -25.01228 -23.48395 -22.24300 -21.37818 -20.78888 -19.61160 -19.56716 -19.46959 -18.70061 -18.05556 -17.45931 -17.14488 -16.19699 -15.93246 -15.72416 -15.51457 -15.38915 -15.31529 -15.00994 -14.92557 -14.75918 -14.73774 -14.54485 -14.28064 -14.15329 -13.92091 -13.55909 -13.31011 -13.16308 -13.05814 -12.71912 -12.55958 -12.52222 -12.43316 -12.06124 -11.88288 -11.70125 -11.18135 -11.14374 -10.45565 -10.44049 -10.23457 -9.63921 -8.79456 -6.34314 0.43832 0.92132 1.43712 1.45494 1.46226 1.57590 1.66895 1.94981 2.41594 2.61001 2.82462 2.88438 2.97165 3.00533 3.46406 3.59148 3.80639 3.84272 3.95635 4.19600 4.25465 4.39636 4.41133 4.50562 4.52853 4.58457 4.64241 4.69660 4.87387 4.90893 5.00218 5.03382 5.24623 5.47614 5.62980 5.70092 5.77094 5.82508 6.07360 6.45276 6.65146 7.33228 7.57121 8.59073 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018525 B = 0.004502 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.132531 B = 6217.731284 C = 6398.157625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.202 4.202 3 C 0.139 3.861 4 N -0.449 5.449 5 C 0.161 3.839 6 C -0.064 4.064 7 C 0.454 3.546 8 F -0.194 7.194 9 F -0.172 7.172 10 F -0.180 7.180 11 N -0.298 5.298 12 N -0.355 5.355 13 C 0.372 3.628 14 N -0.461 5.461 15 C 0.057 3.943 16 C 0.213 3.787 17 H -0.006 1.006 18 C -0.123 4.123 19 C -0.598 4.598 20 H 0.048 0.952 21 C 0.009 3.991 22 N -0.916 5.916 23 Si 1.057 2.943 24 H -0.280 1.280 25 H -0.271 1.271 26 H -0.268 1.268 27 H 0.130 0.870 28 H 0.103 0.897 29 H 0.084 0.916 30 H 0.140 0.860 31 H 0.106 0.894 32 H 0.167 0.833 33 H 0.171 0.829 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.023 0.977 37 H 0.046 0.954 38 H 0.017 0.983 39 H 0.054 0.946 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.629 16.570 4.303 24.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.221 4.221 3 C 0.019 3.981 4 N -0.141 5.141 5 C -0.107 4.107 6 C -0.103 4.103 7 C 0.398 3.602 8 F -0.176 7.176 9 F -0.153 7.153 10 F -0.162 7.162 11 N -0.139 5.139 12 N -0.199 5.199 13 C 0.014 3.986 14 N -0.187 5.187 15 C -0.090 4.090 16 C 0.106 3.894 17 H 0.012 0.988 18 C -0.181 4.181 19 C -0.636 4.636 20 H 0.066 0.934 21 C -0.194 4.194 22 N -0.550 5.550 23 Si 0.880 3.120 24 H -0.205 1.205 25 H -0.196 1.196 26 H -0.194 1.194 27 H 0.148 0.852 28 H 0.122 0.878 29 H 0.102 0.898 30 H 0.158 0.842 31 H 0.124 0.876 32 H 0.184 0.816 33 H 0.189 0.811 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.042 0.958 37 H 0.065 0.935 38 H 0.036 0.964 39 H 0.073 0.927 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.164 15.363 5.891 23.065 hybrid contribution -0.847 0.334 -1.519 1.771 sum -17.011 15.697 4.372 23.556 Atomic orbital electron populations 1.24060 0.94411 1.03705 0.94744 1.22927 0.96901 0.97443 1.04793 1.21270 0.91394 0.98351 0.87121 1.46551 1.12726 1.41275 1.13535 1.24353 0.99507 1.03450 0.83428 1.21394 0.86621 0.95382 1.06951 1.20566 0.80933 0.81894 0.76763 1.93224 1.83070 1.85000 1.56290 1.93217 1.51518 1.79947 1.90653 1.93289 1.93035 1.65671 1.64162 1.73914 0.99596 1.14394 1.25969 1.74648 1.24929 1.17103 1.03210 1.22712 0.86032 0.97468 0.92353 1.59028 1.29627 1.03366 1.26728 1.22178 0.90757 0.96129 0.99957 1.19408 0.92099 0.83417 0.94443 0.98830 1.21953 0.98975 0.99349 0.97834 1.21831 1.38613 1.07889 0.95260 0.93389 1.26476 0.94639 0.92072 1.06217 1.70956 1.44695 1.34450 1.04873 0.83827 0.77852 0.76816 0.73457 1.20521 1.19627 1.19377 0.85231 0.87836 0.89778 0.84216 0.87554 0.81556 0.81139 0.90203 0.90534 0.95782 0.93498 0.96353 0.92698 0.92853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 11.95 67.79 0.81 -1.36 16 2 C -0.20 -4.62 8.90 25.65 0.23 -4.39 16 3 C 0.14 2.77 6.51 85.64 0.56 3.33 16 4 N -0.45 -12.67 2.79 -518.91 -1.45 -14.12 16 5 C 0.16 4.24 6.79 137.64 0.94 5.17 16 6 C -0.06 -0.88 5.63 29.85 0.17 -0.71 16 7 C 0.45 8.29 3.15 71.98 0.23 8.51 16 8 F -0.19 -5.03 17.02 44.97 0.77 -4.26 16 9 F -0.17 -2.64 17.32 44.97 0.78 -1.86 16 10 F -0.18 -3.71 13.42 44.97 0.60 -3.11 16 11 N -0.30 -10.71 12.18 -49.54 -0.60 -11.31 16 12 N -0.35 -14.87 11.98 -58.00 -0.69 -15.57 16 13 C 0.37 14.05 5.21 260.11 1.36 15.41 16 14 N -0.46 -19.00 4.66 -711.00 -3.31 -22.31 16 15 C 0.06 2.15 9.11 127.69 1.16 3.32 16 16 C 0.21 10.33 1.56 44.17 0.07 10.40 16 17 H -0.01 -0.31 6.53 -2.39 -0.02 -0.32 16 18 C -0.12 -5.72 8.68 71.98 0.62 -5.10 16 19 C -0.60 -32.48 8.02 25.60 0.21 -32.28 16 20 H 0.05 2.77 6.90 -2.91 -0.02 2.75 16 21 C 0.01 0.51 5.12 84.65 0.43 0.94 16 22 N -0.92 -54.89 13.70 21.45 0.29 -54.59 16 23 Si 1.06 51.36 26.57 68.60 1.82 53.18 16 24 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 25 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 26 H -0.27 -12.53 6.47 99.48 0.64 -11.89 16 27 H 0.13 1.26 7.84 -2.91 -0.02 1.24 16 28 H 0.10 1.73 8.06 -2.91 -0.02 1.70 16 29 H 0.08 2.64 6.35 -2.91 -0.02 2.62 16 30 H 0.14 1.35 6.74 -2.39 -0.02 1.33 16 31 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.17 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.17 0.75 7.17 -2.39 -0.02 0.73 16 34 H 0.08 3.17 6.57 -2.39 -0.02 3.15 16 35 H 0.08 2.36 8.06 -2.39 -0.02 2.34 16 36 H 0.02 0.95 8.13 -2.38 -0.02 0.93 16 37 H 0.05 2.26 5.92 -2.38 -0.01 2.24 16 38 H 0.02 0.81 7.51 -2.39 -0.02 0.79 16 39 H 0.05 2.45 6.43 -2.39 -0.02 2.43 16 40 H 0.26 15.71 8.73 -92.71 -0.81 14.90 16 Total: -1.00 -72.62 338.16 5.96 -66.66 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: 0.97 Total: 4.05 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: 6.78 Total: 3.24 kcal Atomic # 7 Polarization: -112.14 SS G_CDS: -5.76 Total: -117.90 kcal Atomic # 9 Polarization: -11.38 SS G_CDS: 2.15 Total: -9.23 kcal Atomic # 14 Polarization: 51.36 SS G_CDS: 1.82 Total: 53.18 kcal Total: -72.62 5.96 -66.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564962150.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.512 kcal (2) G-P(sol) polarization free energy of solvation -72.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds