Wall clock time and date at job start Tue Mar 31 2020 14:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47610 * 2 1 4 4 C 1.50709 * 109.46853 * 239.99910 * 2 1 3 5 5 H 1.07995 * 120.00350 * 245.48930 * 4 2 1 6 6 C 1.37878 * 119.99661 * 65.49007 * 4 2 1 7 7 N 1.31517 * 119.99990 * 8.22403 * 6 4 2 8 8 Si 1.86793 * 119.99780 * 188.22907 * 6 4 2 9 9 H 1.48505 * 109.47491 * 84.99589 * 8 6 4 10 10 H 1.48509 * 109.47101 * 204.98992 * 8 6 4 11 11 H 1.48494 * 109.47428 * 324.98808 * 8 6 4 12 12 N 1.46900 * 109.47110 * 120.00568 * 2 1 3 13 13 C 1.46902 * 111.00104 * 176.04115 * 12 2 1 14 14 C 1.38570 * 110.99913 * 299.99636 * 12 2 1 15 15 N 1.31221 * 126.47328 * 359.68822 * 14 12 2 16 16 N 1.28531 * 109.85995 * 179.82620 * 15 14 12 17 17 C 1.30294 * 110.05193 * 0.45149 * 16 15 14 18 18 C 1.50710 * 126.34493 * 179.76778 * 17 16 15 19 19 C 1.52997 * 109.46734 * 275.31260 * 18 17 16 20 20 F 1.39899 * 109.47054 * 64.58948 * 19 18 17 21 21 F 1.39900 * 109.47100 * 184.58533 * 19 18 17 22 22 F 1.39898 * 109.47651 * 304.59171 * 19 18 17 23 23 N 1.36455 * 126.47398 * 180.02562 * 14 12 2 24 24 C 1.46500 * 127.13706 * 0.02562 * 23 14 12 25 25 C 1.52997 * 117.50085 * 312.06648 * 24 23 14 26 26 C 1.53001 * 117.49941 * 243.40398 * 24 23 14 27 27 H 1.09010 * 109.46604 * 306.96439 * 1 2 3 28 28 H 1.08998 * 109.47063 * 66.95637 * 1 2 3 29 29 H 1.08995 * 109.47599 * 186.96505 * 1 2 3 30 30 H 0.97006 * 119.99755 * 180.02562 * 7 6 4 31 31 H 1.08997 * 109.47181 * 60.00142 * 13 12 2 32 32 H 1.09003 * 109.47436 * 179.97438 * 13 12 2 33 33 H 1.09001 * 109.46959 * 299.99801 * 13 12 2 34 34 H 1.08995 * 109.47000 * 35.31508 * 18 17 16 35 35 H 1.09003 * 109.46747 * 155.31802 * 18 17 16 36 36 H 1.09001 * 115.54810 * 97.73709 * 24 23 14 37 37 H 1.09008 * 117.49840 * 359.97438 * 25 24 23 38 38 H 1.08999 * 117.49877 * 145.02059 * 25 24 23 39 39 H 1.09002 * 117.49540 * 214.97662 * 26 24 23 40 40 H 1.08999 * 117.50260 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.5781 -1.6373 -1.1340 6 6 1.7950 -0.1771 -2.4796 7 7 1.2757 1.0259 -2.5931 8 14 2.2108 -1.1631 -4.0106 9 1 1.0801 -2.0683 -4.3388 10 1 2.4489 -0.2367 -5.1466 11 1 3.4339 -1.9682 -3.7638 12 7 2.0196 -0.6926 1.1994 13 6 3.4850 -0.7948 1.1869 14 6 1.5754 -0.0643 2.3518 15 7 0.8234 1.0092 2.4145 16 7 0.6003 1.3149 3.6429 17 6 1.1997 0.4671 4.4301 18 6 1.1865 0.4844 5.9371 19 6 2.2773 1.4290 6.4457 20 9 1.9825 2.7380 6.0499 21 9 2.3348 1.3659 7.8421 22 9 3.5120 1.0469 5.9104 23 7 1.8425 -0.4414 3.6357 24 6 2.6508 -1.5825 4.0724 25 6 2.3750 -2.9363 3.4152 26 6 1.9455 -2.6864 4.8631 27 1 -0.3633 0.6180 0.8212 28 1 -0.3633 0.4023 -0.9456 29 1 -0.3634 -1.0200 0.1246 30 1 1.1084 1.4010 -3.4719 31 1 3.9187 0.2048 1.1591 32 1 3.8210 -1.3112 2.0861 33 1 3.8028 -1.3534 0.3065 34 1 0.2141 0.8299 6.2879 35 1 1.3723 -0.5215 6.3136 36 1 3.6825 -1.3533 4.3388 37 1 1.5918 -2.9781 2.6581 38 1 3.2252 -3.5979 3.2496 39 1 2.5136 -3.1837 5.6493 40 1 0.8803 -2.5634 5.0587 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569935680.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:54 Heat of formation + Delta-G solvation = -24.840553 kcal Electronic energy + Delta-G solvation = -28311.878403 eV Core-core repulsion = 23943.058521 eV Total energy + Delta-G solvation = -4368.819882 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.19821 -47.74826 -47.61694 -42.69373 -37.73378 -37.18207 -33.41076 -33.01984 -31.98412 -29.37022 -28.54718 -25.63150 -24.64423 -23.92807 -23.39321 -22.85496 -21.57133 -20.38722 -19.54186 -18.59231 -18.56918 -17.83157 -16.97204 -16.49667 -15.99264 -15.30619 -15.13206 -14.71942 -14.62884 -14.49573 -14.11519 -14.10100 -13.84479 -13.80752 -13.74542 -13.64932 -13.11922 -12.87771 -12.48281 -12.21058 -12.02355 -11.80690 -11.51304 -11.24148 -11.08958 -10.99551 -10.80822 -10.50440 -10.47545 -10.29740 -10.16828 -9.93282 -9.69030 -9.42304 -8.75540 -8.47387 -7.48301 -6.09841 -4.14733 1.85219 2.36672 2.69538 3.23304 3.26980 3.27215 3.34041 3.34766 3.65398 3.78234 3.86104 4.22047 4.34194 4.43054 4.48134 4.49657 4.74195 4.76979 5.05736 5.23685 5.28142 5.45202 5.55039 5.69075 5.69826 5.93895 5.95337 6.01393 6.22220 6.43836 6.74116 6.92269 7.07215 7.24552 7.39352 7.57461 7.70629 7.87840 8.11074 8.39005 8.86738 9.19163 9.49036 10.98697 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022010 B = 0.003916 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.838125 B = 7148.296611 C = 7736.492387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.227 3.773 3 H 0.029 0.971 4 C -0.521 4.521 5 H 0.064 0.936 6 C 0.067 3.933 7 N -0.881 5.881 8 Si 0.897 3.103 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.275 1.275 12 N -0.449 5.449 13 C 0.037 3.963 14 C 0.404 3.596 15 N -0.313 5.313 16 N -0.254 5.254 17 C 0.123 3.877 18 C -0.062 4.062 19 C 0.458 3.542 20 F -0.171 7.171 21 F -0.184 7.184 22 F -0.183 7.183 23 N -0.458 5.458 24 C 0.050 3.950 25 C -0.149 4.149 26 C -0.177 4.177 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.024 0.976 30 H 0.264 0.736 31 H 0.030 0.970 32 H 0.052 0.948 33 H 0.097 0.903 34 H 0.138 0.862 35 H 0.122 0.878 36 H 0.134 0.866 37 H 0.117 0.883 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.466 -6.529 18.931 20.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.123 3.877 3 H 0.047 0.953 4 C -0.559 4.559 5 H 0.082 0.918 6 C -0.137 4.137 7 N -0.518 5.518 8 Si 0.725 3.275 9 H -0.205 1.205 10 H -0.213 1.213 11 H -0.200 1.200 12 N -0.172 5.172 13 C -0.110 4.110 14 C 0.050 3.950 15 N -0.159 5.159 16 N -0.095 5.095 17 C -0.143 4.143 18 C -0.103 4.103 19 C 0.402 3.598 20 F -0.152 7.152 21 F -0.165 7.165 22 F -0.164 7.164 23 N -0.155 5.155 24 C -0.055 4.055 25 C -0.187 4.187 26 C -0.215 4.215 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.043 0.957 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.071 0.929 33 H 0.115 0.885 34 H 0.156 0.844 35 H 0.140 0.860 36 H 0.151 0.849 37 H 0.135 0.865 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.437 -5.664 18.269 19.281 hybrid contribution 1.410 -0.808 -0.441 1.684 sum 3.847 -6.472 17.828 19.352 Atomic orbital electron populations 1.21898 0.96902 0.98745 1.02014 1.19422 0.93125 0.93005 0.82102 0.95342 1.20986 1.36937 1.08335 0.89648 0.91751 1.24899 0.95162 0.94651 0.98957 1.69992 1.43392 1.14322 1.24077 0.86537 0.78740 0.79846 0.82394 1.20476 1.21283 1.19955 1.59095 1.10927 1.47786 0.99433 1.22391 0.84838 1.01044 1.02737 1.23389 0.97072 0.90484 0.84056 1.74948 1.20538 1.10403 1.09975 1.74011 1.17910 1.20585 0.96958 1.23246 1.03290 0.93830 0.93977 1.20949 0.99848 1.01223 0.88280 1.20381 0.82893 0.81410 0.75077 1.93257 1.93052 1.38453 1.90425 1.93188 1.96670 1.96436 1.30208 1.93188 1.46190 1.91024 1.86021 1.45500 1.40664 1.23554 1.05740 1.21897 0.95142 0.81366 1.07089 1.23386 1.04783 0.94749 0.95743 1.23457 1.01730 1.00065 0.96210 0.93272 0.91074 0.95650 0.92652 0.95092 0.92910 0.88470 0.84427 0.86020 0.84888 0.86499 0.86931 0.87051 0.87997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 8.79 37.16 0.33 -3.15 16 2 C 0.23 5.72 1.59 -68.86 -0.11 5.62 16 3 H 0.03 0.83 8.06 -51.93 -0.42 0.41 16 4 C -0.52 -13.63 7.72 -34.44 -0.27 -13.89 16 5 H 0.06 1.63 6.64 -52.49 -0.35 1.28 16 6 C 0.07 1.79 5.16 -17.82 -0.09 1.70 16 7 N -0.88 -25.05 12.11 55.43 0.67 -24.38 16 8 Si 0.90 20.63 29.54 -169.99 -5.02 15.60 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 12 N -0.45 -9.38 4.36 -176.08 -0.77 -10.15 16 13 C 0.04 0.67 8.89 60.07 0.53 1.20 16 14 C 0.40 8.16 6.61 -318.88 -2.11 6.06 16 15 N -0.31 -7.06 9.04 30.31 0.27 -6.78 16 16 N -0.25 -5.06 12.18 32.99 0.40 -4.65 16 17 C 0.12 1.91 6.78 -154.01 -1.04 0.87 16 18 C -0.06 -0.64 5.69 -27.88 -0.16 -0.80 16 19 C 0.46 5.27 3.16 37.16 0.12 5.39 16 20 F -0.17 -2.41 17.13 2.25 0.04 -2.37 16 21 F -0.18 -1.87 17.32 2.25 0.04 -1.83 16 22 F -0.18 -2.33 16.91 2.25 0.04 -2.29 16 23 N -0.46 -7.19 3.09 -107.01 -0.33 -7.52 16 24 C 0.05 0.56 4.39 -67.93 -0.30 0.26 16 25 C -0.15 -1.54 9.01 -26.69 -0.24 -1.78 16 26 C -0.18 -1.45 9.50 -26.69 -0.25 -1.70 16 27 H 0.05 1.23 5.64 -51.92 -0.29 0.94 16 28 H 0.07 1.94 6.72 -51.93 -0.35 1.59 16 29 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.77 5.18 -51.93 -0.27 0.50 16 33 H 0.10 1.79 6.34 -51.93 -0.33 1.46 16 34 H 0.14 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.12 0.88 6.95 -51.93 -0.36 0.52 16 36 H 0.13 1.33 8.12 -51.93 -0.42 0.91 16 37 H 0.12 1.56 8.12 -51.92 -0.42 1.13 16 38 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 339.21 15.07 5.11 5.11 Total: -1.00 -31.64 339.21 -8.02 -39.66 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -4.88 Total: -0.18 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -3.59 Total: -0.23 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: 0.25 Total: -53.49 kcal Atomic # 9 Polarization: -6.60 SS G_CDS: 0.12 Total: -6.48 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.64 -8.02 -39.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569935680.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.820 kcal (2) G-P(sol) polarization free energy of solvation -31.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds