Wall clock time and date at job start Tue Mar 31 2020 14:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47610 * 2 1 4 4 C 1.50709 * 109.46853 * 239.99910 * 2 1 3 5 5 H 1.07995 * 120.00350 * 245.48930 * 4 2 1 6 6 C 1.37878 * 119.99661 * 65.49007 * 4 2 1 7 7 N 1.31517 * 119.99990 * 8.22403 * 6 4 2 8 8 Si 1.86793 * 119.99780 * 188.22907 * 6 4 2 9 9 H 1.48505 * 109.47491 * 84.99589 * 8 6 4 10 10 H 1.48509 * 109.47101 * 204.98992 * 8 6 4 11 11 H 1.48494 * 109.47428 * 324.98808 * 8 6 4 12 12 N 1.46900 * 109.47110 * 120.00568 * 2 1 3 13 13 C 1.46902 * 111.00104 * 176.04115 * 12 2 1 14 14 C 1.38570 * 110.99913 * 299.99636 * 12 2 1 15 15 N 1.31221 * 126.47328 * 359.68822 * 14 12 2 16 16 N 1.28531 * 109.85995 * 179.82620 * 15 14 12 17 17 C 1.30294 * 110.05193 * 0.45149 * 16 15 14 18 18 C 1.50710 * 126.34493 * 179.76778 * 17 16 15 19 19 C 1.52997 * 109.46734 * 275.31260 * 18 17 16 20 20 F 1.39899 * 109.47054 * 64.58948 * 19 18 17 21 21 F 1.39900 * 109.47100 * 184.58533 * 19 18 17 22 22 F 1.39898 * 109.47651 * 304.59171 * 19 18 17 23 23 N 1.36455 * 126.47398 * 180.02562 * 14 12 2 24 24 C 1.46500 * 127.13706 * 0.02562 * 23 14 12 25 25 C 1.52997 * 117.50085 * 312.06648 * 24 23 14 26 26 C 1.53001 * 117.49941 * 243.40398 * 24 23 14 27 27 H 1.09010 * 109.46604 * 306.96439 * 1 2 3 28 28 H 1.08998 * 109.47063 * 66.95637 * 1 2 3 29 29 H 1.08995 * 109.47599 * 186.96505 * 1 2 3 30 30 H 0.97006 * 119.99755 * 180.02562 * 7 6 4 31 31 H 1.08997 * 109.47181 * 60.00142 * 13 12 2 32 32 H 1.09003 * 109.47436 * 179.97438 * 13 12 2 33 33 H 1.09001 * 109.46959 * 299.99801 * 13 12 2 34 34 H 1.08995 * 109.47000 * 35.31508 * 18 17 16 35 35 H 1.09003 * 109.46747 * 155.31802 * 18 17 16 36 36 H 1.09001 * 115.54810 * 97.73709 * 24 23 14 37 37 H 1.09008 * 117.49840 * 359.97438 * 25 24 23 38 38 H 1.08999 * 117.49877 * 145.02059 * 25 24 23 39 39 H 1.09002 * 117.49540 * 214.97662 * 26 24 23 40 40 H 1.08999 * 117.50260 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.5781 -1.6373 -1.1340 6 6 1.7950 -0.1771 -2.4796 7 7 1.2757 1.0259 -2.5931 8 14 2.2108 -1.1631 -4.0106 9 1 1.0801 -2.0683 -4.3388 10 1 2.4489 -0.2367 -5.1466 11 1 3.4339 -1.9682 -3.7638 12 7 2.0196 -0.6926 1.1994 13 6 3.4850 -0.7948 1.1869 14 6 1.5754 -0.0643 2.3518 15 7 0.8234 1.0092 2.4145 16 7 0.6003 1.3149 3.6429 17 6 1.1997 0.4671 4.4301 18 6 1.1865 0.4844 5.9371 19 6 2.2773 1.4290 6.4457 20 9 1.9825 2.7380 6.0499 21 9 2.3348 1.3659 7.8421 22 9 3.5120 1.0469 5.9104 23 7 1.8425 -0.4414 3.6357 24 6 2.6508 -1.5825 4.0724 25 6 2.3750 -2.9363 3.4152 26 6 1.9455 -2.6864 4.8631 27 1 -0.3633 0.6180 0.8212 28 1 -0.3633 0.4023 -0.9456 29 1 -0.3634 -1.0200 0.1246 30 1 1.1084 1.4010 -3.4719 31 1 3.9187 0.2048 1.1591 32 1 3.8210 -1.3112 2.0861 33 1 3.8028 -1.3534 0.3065 34 1 0.2141 0.8299 6.2879 35 1 1.3723 -0.5215 6.3136 36 1 3.6825 -1.3533 4.3388 37 1 1.5918 -2.9781 2.6581 38 1 3.2252 -3.5979 3.2496 39 1 2.5136 -3.1837 5.6493 40 1 0.8803 -2.5634 5.0587 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569935680.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:54 Heat of formation + Delta-G solvation = -42.616948 kcal Electronic energy + Delta-G solvation = -28312.649245 eV Core-core repulsion = 23943.058521 eV Total energy + Delta-G solvation = -4369.590724 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.13787 -48.65020 -48.61749 -44.07707 -38.99884 -38.53476 -34.99596 -34.41400 -33.30985 -31.26625 -29.95566 -27.38110 -26.36320 -25.04133 -24.58299 -23.79515 -22.99761 -21.59284 -21.06449 -19.54333 -19.53173 -18.86673 -18.50191 -17.90544 -17.45377 -16.85395 -16.57583 -15.98228 -15.73787 -15.56407 -15.35575 -15.24326 -15.04526 -15.02879 -14.78755 -14.74802 -14.31183 -14.17595 -13.92446 -13.67015 -13.19575 -13.16101 -12.86214 -12.73213 -12.51684 -12.41238 -12.32621 -12.17836 -12.14708 -12.07962 -11.71734 -11.43407 -11.00384 -10.88862 -10.66073 -10.48618 -9.12591 -8.16106 -6.28192 0.59217 1.15712 1.44764 1.46950 1.55711 1.57086 1.95161 2.40564 2.47002 2.65406 2.82316 2.92258 2.98419 3.16595 3.41918 3.59591 3.68536 3.83719 3.99383 4.06497 4.29754 4.35659 4.46703 4.60828 4.69952 4.76745 4.78878 4.81572 4.92292 5.00956 5.08796 5.17672 5.21940 5.38644 5.48742 5.64207 5.85279 5.94573 6.10276 6.54739 6.82007 7.39928 7.74750 8.93372 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022010 B = 0.003916 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.838125 B = 7148.296611 C = 7736.492387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.240 3.760 3 H -0.022 1.022 4 C -0.527 4.527 5 H 0.075 0.925 6 C 0.015 3.985 7 N -0.920 5.920 8 Si 0.967 3.033 9 H -0.275 1.275 10 H -0.289 1.289 11 H -0.259 1.259 12 N -0.445 5.445 13 C 0.041 3.959 14 C 0.383 3.617 15 N -0.364 5.364 16 N -0.302 5.302 17 C 0.152 3.848 18 C -0.059 4.059 19 C 0.460 3.540 20 F -0.190 7.190 21 F -0.171 7.171 22 F -0.190 7.190 23 N -0.446 5.446 24 C 0.016 3.984 25 C -0.157 4.157 26 C -0.140 4.140 27 H 0.045 0.955 28 H 0.043 0.957 29 H 0.029 0.971 30 H 0.263 0.737 31 H 0.009 0.991 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.162 0.838 35 H 0.164 0.836 36 H 0.153 0.847 37 H 0.083 0.917 38 H 0.138 0.862 39 H 0.153 0.847 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.643 -9.445 21.407 23.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.134 3.866 3 H -0.005 1.005 4 C -0.565 4.565 5 H 0.093 0.907 6 C -0.185 4.185 7 N -0.559 5.559 8 Si 0.791 3.209 9 H -0.201 1.201 10 H -0.215 1.215 11 H -0.183 1.183 12 N -0.168 5.168 13 C -0.106 4.106 14 C 0.026 3.974 15 N -0.210 5.210 16 N -0.141 5.141 17 C -0.117 4.117 18 C -0.098 4.098 19 C 0.405 3.595 20 F -0.172 7.172 21 F -0.152 7.152 22 F -0.172 7.172 23 N -0.142 5.142 24 C -0.086 4.086 25 C -0.195 4.195 26 C -0.177 4.177 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.048 0.952 30 H 0.072 0.928 31 H 0.028 0.972 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.180 0.820 35 H 0.181 0.819 36 H 0.170 0.830 37 H 0.101 0.899 38 H 0.156 0.844 39 H 0.171 0.829 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.629 -8.606 20.789 22.791 hybrid contribution 1.068 0.109 -1.006 1.472 sum 4.698 -8.497 19.783 22.037 Atomic orbital electron populations 1.21685 0.97402 0.98523 1.00282 1.18990 0.92660 0.90706 0.84222 1.00463 1.21297 1.36616 1.08466 0.90123 0.90702 1.25792 0.95034 0.95431 1.02268 1.70152 1.44881 1.16173 1.24660 0.85443 0.79027 0.78274 0.78125 1.20054 1.21468 1.18277 1.58995 1.12205 1.47074 0.98488 1.22445 0.83371 1.00189 1.04584 1.23217 0.97931 0.90893 0.85378 1.74773 1.22012 1.12185 1.11989 1.73907 1.20720 1.22815 0.96633 1.24161 0.99997 0.91617 0.95904 1.21297 1.00834 1.03433 0.84286 1.20445 0.82781 0.80671 0.75587 1.93229 1.93170 1.40081 1.90718 1.93217 1.96601 1.96309 1.29075 1.93178 1.46795 1.90961 1.86224 1.45692 1.40171 1.24392 1.03910 1.22469 0.96065 0.80447 1.09642 1.23408 1.05007 0.94363 0.96687 1.23637 1.01923 0.96426 0.95737 0.93577 0.93814 0.95185 0.92813 0.97221 0.88862 0.88829 0.81999 0.81863 0.82950 0.89860 0.84402 0.82945 0.88132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.43 8.79 71.98 0.63 -5.80 16 2 C 0.24 12.69 1.59 44.17 0.07 12.76 16 3 H -0.02 -1.39 8.06 -2.39 -0.02 -1.41 16 4 C -0.53 -28.22 7.72 25.60 0.20 -28.02 16 5 H 0.07 3.77 6.64 -2.91 -0.02 3.75 16 6 C 0.01 0.80 5.16 84.65 0.44 1.24 16 7 N -0.92 -54.58 12.11 21.45 0.26 -54.32 16 8 Si 0.97 42.67 29.54 68.60 2.03 44.70 16 9 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 10 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 11 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 12 N -0.44 -19.02 4.36 -710.99 -3.10 -22.12 16 13 C 0.04 1.48 8.89 127.69 1.14 2.62 16 14 C 0.38 15.75 6.61 260.11 1.72 17.47 16 15 N -0.36 -17.20 9.04 -58.01 -0.52 -17.72 16 16 N -0.30 -12.23 12.18 -49.53 -0.60 -12.83 16 17 C 0.15 4.51 6.78 137.64 0.93 5.44 16 18 C -0.06 -1.00 5.69 29.85 0.17 -0.83 16 19 C 0.46 9.39 3.16 71.98 0.23 9.62 16 20 F -0.19 -5.19 17.13 44.97 0.77 -4.42 16 21 F -0.17 -2.90 17.32 44.97 0.78 -2.12 16 22 F -0.19 -4.36 16.91 44.97 0.76 -3.60 16 23 N -0.45 -13.42 3.09 -492.46 -1.52 -14.94 16 24 C 0.02 0.31 4.39 44.99 0.20 0.51 16 25 C -0.16 -2.73 9.01 30.62 0.28 -2.45 16 26 C -0.14 -1.58 9.50 30.62 0.29 -1.29 16 27 H 0.05 2.46 5.64 -2.38 -0.01 2.45 16 28 H 0.04 2.52 6.72 -2.39 -0.02 2.51 16 29 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.26 14.82 8.31 -92.70 -0.77 14.05 16 31 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.09 2.56 5.18 -2.39 -0.01 2.55 16 33 H 0.09 3.43 6.34 -2.39 -0.02 3.42 16 34 H 0.16 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.16 1.45 6.95 -2.39 -0.02 1.43 16 36 H 0.15 2.38 8.12 -2.39 -0.02 2.36 16 37 H 0.08 2.10 8.12 -2.38 -0.02 2.08 16 38 H 0.14 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.15 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -75.01 339.21 6.22 -68.79 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: 1.08 Total: 7.32 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: 6.29 Total: 11.25 kcal Atomic # 7 Polarization: -116.44 SS G_CDS: -5.49 Total: -121.93 kcal Atomic # 9 Polarization: -12.45 SS G_CDS: 2.31 Total: -10.14 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -75.01 6.22 -68.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569935680.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.178 kcal (2) G-P(sol) polarization free energy of solvation -75.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds