Wall clock time and date at job start Tue Mar 31 2020 14:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47371 * 2 1 4 4 C 1.36451 * 125.85576 * 85.01914 * 3 2 1 5 5 C 1.34956 * 108.94661 * 180.02562 * 4 3 2 6 6 C 1.41212 * 108.24588 * 359.97438 * 5 4 3 7 7 N 1.32931 * 126.37658 * 180.02562 * 6 5 4 8 8 C 1.33834 * 120.00226 * 0.02562 * 7 6 5 9 9 O 1.21839 * 119.99823 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99952 * 180.02562 * 8 7 6 11 11 C 1.46506 * 119.99868 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.47289 * 89.99907 * 11 10 8 13 13 H 1.07994 * 119.99399 * 0.02562 * 12 11 10 14 14 C 1.37874 * 119.99789 * 179.97438 * 12 11 10 15 15 N 1.31518 * 120.00144 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99733 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46632 * 90.00476 * 16 14 12 18 18 H 1.48496 * 109.46690 * 210.00029 * 16 14 12 19 19 H 1.48498 * 109.47171 * 330.00226 * 16 14 12 20 20 C 1.46498 * 120.00377 * 0.02562 * 10 8 7 21 21 C 1.50704 * 109.47158 * 270.00187 * 20 10 8 22 22 C 1.34508 * 125.78966 * 89.71164 * 21 20 10 23 23 C 1.41389 * 106.84038 * 179.89105 * 22 21 20 24 24 C 1.34515 * 106.83869 * 0.37096 * 23 22 21 25 25 O 1.34298 * 125.78736 * 270.01953 * 21 20 10 26 26 N 1.37414 * 107.24222 * 0.26350 * 6 5 4 27 27 H 0.96999 * 126.37065 * 179.71703 * 26 6 5 28 28 H 1.09002 * 109.46793 * 60.00463 * 1 2 3 29 29 H 1.08999 * 109.46915 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47312 * 300.00522 * 1 2 3 31 31 H 1.09004 * 109.47706 * 239.99531 * 2 1 3 32 32 H 1.09003 * 109.47298 * 119.99688 * 2 1 3 33 33 H 1.07998 * 125.52671 * 359.97438 * 4 3 2 34 34 H 1.08001 * 125.87681 * 180.02562 * 5 4 3 35 35 H 1.09001 * 109.47060 * 210.00357 * 11 10 8 36 36 H 1.09004 * 109.47073 * 329.99846 * 11 10 8 37 37 H 0.96997 * 119.99752 * 179.97438 * 15 14 12 38 38 H 1.08997 * 109.46694 * 29.99578 * 20 10 8 39 39 H 1.08995 * 109.47258 * 149.99854 * 20 10 8 40 40 H 1.07998 * 126.58421 * 0.02562 * 22 21 20 41 41 H 1.07997 * 126.57555 * 180.16762 * 23 22 21 42 42 H 1.07998 * 125.78768 * 179.74826 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1943 2.1668 1.1018 5 6 2.6563 3.3729 0.7107 6 6 2.7831 3.3631 -0.6957 7 7 3.2085 4.3671 -1.4561 8 6 3.5671 5.5272 -0.8934 9 8 3.5041 5.6630 0.3157 10 7 3.9979 6.5453 -1.6644 11 6 4.3910 7.8151 -1.0485 12 6 5.8603 7.7783 -0.7153 13 1 6.4429 6.8973 -0.9402 14 6 6.4606 8.8696 -0.1242 15 7 5.7510 9.9427 0.1493 16 14 8.2817 8.8237 0.2895 17 1 9.0646 9.3313 -0.8658 18 1 8.5412 9.6771 1.4767 19 1 8.6868 7.4262 0.5863 20 6 4.0731 6.3822 -3.1183 21 6 5.4333 5.8540 -3.4949 22 6 5.7744 4.5564 -3.5908 23 6 7.1359 4.5176 -3.9698 24 6 7.5476 5.7939 -4.0749 25 8 6.5121 6.5990 -3.7861 26 7 2.3797 2.1242 -1.1324 27 1 2.3518 1.8197 -2.0529 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.9952 1.8715 2.1213 34 1 2.8899 4.2027 1.3614 35 1 4.1964 8.6318 -1.7437 36 1 3.8152 7.9699 -0.1359 37 1 6.1734 10.7103 0.5654 38 1 3.3070 5.6791 -3.4451 39 1 3.9112 7.3460 -3.6009 40 1 5.1310 3.7071 -3.4144 41 1 7.7319 3.6330 -4.1389 42 1 8.5423 6.1165 -4.3452 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597030641.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:15 Heat of formation + Delta-G solvation = 115.254678 kcal Electronic energy + Delta-G solvation = -26808.690981 eV Core-core repulsion = 22987.802824 eV Total energy + Delta-G solvation = -3820.888157 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.75735 -41.20933 -38.64572 -35.41110 -34.44697 -32.73039 -32.23318 -32.10042 -31.42024 -29.66323 -28.68323 -26.92101 -25.03270 -23.78103 -22.82897 -21.75650 -21.20750 -20.94909 -20.00209 -18.81899 -17.45295 -16.75194 -16.40045 -15.98518 -15.66228 -15.39203 -15.15395 -14.89052 -14.59332 -14.30630 -14.29083 -13.83065 -13.41735 -13.16215 -12.90659 -12.76470 -12.43966 -12.18507 -12.08655 -12.02793 -11.86847 -11.83915 -11.22466 -10.99535 -10.67481 -10.38868 -10.33688 -9.93896 -9.58154 -9.48387 -9.33288 -9.18773 -8.24138 -8.15310 -7.81979 -7.52253 -7.02746 -5.81123 -3.82083 1.38148 1.41260 2.46210 2.96544 3.28640 3.44701 3.49179 3.55839 3.58880 3.80019 4.23245 4.41398 4.45817 4.61932 4.67411 4.68267 4.90664 5.07611 5.13832 5.45661 5.46873 5.52957 5.55672 5.65715 5.68167 5.71465 5.89550 6.00467 6.29257 6.37018 6.46120 6.61116 6.81011 6.93906 7.14202 7.21346 7.32864 7.52980 7.75400 7.86819 7.99045 8.18583 8.29982 8.50692 8.89635 9.19658 9.76322 9.94817 11.26989 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.013806 B = 0.004058 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.591690 B = 6897.530943 C = 7995.804901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.136 3.864 3 N -0.403 5.403 4 C 0.129 3.871 5 C -0.284 4.284 6 C 0.490 3.510 7 N -0.671 5.671 8 C 0.684 3.316 9 O -0.607 6.607 10 N -0.583 5.583 11 C 0.256 3.744 12 C -0.504 4.504 13 H 0.055 0.945 14 C 0.059 3.941 15 N -0.900 5.900 16 Si 0.892 3.108 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.207 3.793 21 C 0.005 3.995 22 C -0.207 4.207 23 C -0.226 4.226 24 C -0.051 4.051 25 O -0.157 6.157 26 N -0.493 5.493 27 H 0.442 0.558 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.186 0.814 34 H 0.192 0.808 35 H 0.031 0.969 36 H 0.045 0.955 37 H 0.260 0.740 38 H 0.105 0.895 39 H 0.079 0.921 40 H 0.141 0.859 41 H 0.135 0.865 42 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.541 -22.509 -4.358 24.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.015 3.985 3 N -0.198 5.198 4 C -0.005 4.005 5 C -0.316 4.316 6 C 0.229 3.771 7 N -0.428 5.428 8 C 0.384 3.616 9 O -0.487 6.487 10 N -0.315 5.315 11 C 0.137 3.863 12 C -0.543 4.543 13 H 0.073 0.927 14 C -0.141 4.141 15 N -0.541 5.541 16 Si 0.721 3.279 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.201 1.201 20 C 0.082 3.918 21 C -0.048 4.048 22 C -0.227 4.227 23 C -0.246 4.246 24 C -0.120 4.120 25 O -0.051 6.051 26 N -0.223 5.223 27 H 0.289 0.711 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.119 0.881 33 H 0.203 0.797 34 H 0.208 0.792 35 H 0.049 0.951 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.123 0.877 39 H 0.097 0.903 40 H 0.159 0.841 41 H 0.153 0.847 42 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -9.525 -22.012 -4.536 24.410 hybrid contribution 1.375 -0.398 0.462 1.504 sum -8.150 -22.411 -4.074 24.192 Atomic orbital electron populations 1.22335 0.94739 1.03027 1.03566 1.21743 0.94869 0.77174 1.04699 1.46434 1.64680 1.10866 0.97799 1.22636 0.96032 0.90825 0.91018 1.22854 1.12990 0.99930 0.95831 1.18797 0.84954 0.83767 0.89606 1.68190 1.34978 1.01907 1.37700 1.16504 0.78182 0.82751 0.84129 1.90713 1.59597 1.83623 1.14745 1.47280 1.65299 1.14478 1.04489 1.19253 0.95488 0.77582 0.94007 1.21429 0.94209 1.00159 1.38545 0.92709 1.24868 0.97912 0.95454 0.95915 1.69938 1.35646 1.04697 1.43807 0.86577 0.85862 0.77786 0.77702 1.20815 1.21310 1.20125 1.19661 0.87977 1.01215 0.82962 1.23215 0.89911 0.89939 1.01707 1.21431 0.95900 0.96806 1.08572 1.21683 0.96491 0.97249 1.09156 1.23838 0.92629 0.89427 1.06068 1.84131 1.17772 1.37288 1.65936 1.44052 1.66734 1.09547 1.01931 0.71113 0.91879 0.90548 0.91462 0.89335 0.88130 0.79709 0.79157 0.95132 0.93711 0.93085 0.87727 0.90252 0.84077 0.84678 0.79243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.61 10.24 37.16 0.38 -0.23 16 2 C 0.14 0.51 7.16 -4.04 -0.03 0.48 16 3 N -0.40 -3.36 3.65 -61.06 -0.22 -3.59 16 4 C 0.13 1.28 11.45 -16.66 -0.19 1.09 16 5 C -0.28 -4.50 9.52 -39.62 -0.38 -4.87 16 6 C 0.49 8.12 8.07 -155.30 -1.25 6.87 16 7 N -0.67 -13.43 9.23 -15.79 -0.15 -13.58 16 8 C 0.68 16.87 8.19 -87.76 -0.72 16.15 16 9 O -0.61 -16.64 12.84 5.06 0.07 -16.58 16 10 N -0.58 -14.45 2.44 -182.41 -0.45 -14.90 16 11 C 0.26 7.37 5.20 -5.19 -0.03 7.34 16 12 C -0.50 -15.57 9.39 -34.44 -0.32 -15.90 16 13 H 0.05 1.76 7.81 -52.49 -0.41 1.35 16 14 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 15 N -0.90 -28.33 13.29 55.43 0.74 -27.59 16 16 Si 0.89 23.67 29.54 -169.99 -5.02 18.65 16 17 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 18 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 19 H -0.28 -7.38 7.11 56.52 0.40 -6.98 16 20 C 0.21 4.24 5.95 -5.19 -0.03 4.21 16 21 C 0.00 0.10 6.90 -35.62 -0.25 -0.15 16 22 C -0.21 -3.96 10.81 -39.70 -0.43 -4.39 16 23 C -0.23 -3.99 10.91 -39.70 -0.43 -4.42 16 24 C -0.05 -0.93 12.09 29.42 0.36 -0.57 16 25 O -0.16 -3.45 10.65 5.72 0.06 -3.39 16 26 N -0.49 -5.44 7.38 31.33 0.23 -5.20 16 27 H 0.44 3.73 8.96 -182.55 -1.64 2.09 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.10 0.19 8.14 -51.93 -0.42 -0.24 16 33 H 0.19 1.04 8.06 -52.49 -0.42 0.61 16 34 H 0.19 3.71 5.77 -52.49 -0.30 3.41 16 35 H 0.03 0.88 7.89 -51.93 -0.41 0.47 16 36 H 0.04 1.42 7.42 -51.93 -0.39 1.03 16 37 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 38 H 0.10 1.88 7.31 -51.93 -0.38 1.50 16 39 H 0.08 1.53 7.89 -51.93 -0.41 1.12 16 40 H 0.14 2.51 8.06 -52.49 -0.42 2.09 16 41 H 0.14 1.97 8.06 -52.49 -0.42 1.54 16 42 H 0.19 2.72 8.06 -52.49 -0.42 2.30 16 LS Contribution 365.98 15.07 5.52 5.52 Total: -1.00 -40.82 365.98 -9.52 -50.34 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -6.87 Total: 3.00 kcal Atomic # 6 Polarization: 10.73 SS G_CDS: -3.42 Total: 7.31 kcal Atomic # 7 Polarization: -65.02 SS G_CDS: 0.15 Total: -64.86 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: 0.13 Total: -19.96 kcal Atomic # 14 Polarization: 23.67 SS G_CDS: -5.02 Total: 18.65 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -40.82 -9.52 -50.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597030641.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.595 kcal (2) G-P(sol) polarization free energy of solvation -40.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds