Wall clock time and date at job start Tue Mar 31 2020 14:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47371 * 2 1 4 4 C 1.36451 * 125.85576 * 85.01914 * 3 2 1 5 5 C 1.34956 * 108.94661 * 180.02562 * 4 3 2 6 6 C 1.41212 * 108.24588 * 359.97438 * 5 4 3 7 7 N 1.32931 * 126.37658 * 180.02562 * 6 5 4 8 8 C 1.33834 * 120.00226 * 0.02562 * 7 6 5 9 9 O 1.21839 * 119.99823 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99952 * 180.02562 * 8 7 6 11 11 C 1.46506 * 119.99868 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.47289 * 89.99907 * 11 10 8 13 13 H 1.07994 * 119.99399 * 0.02562 * 12 11 10 14 14 C 1.37874 * 119.99789 * 179.97438 * 12 11 10 15 15 N 1.31518 * 120.00144 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99733 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46632 * 90.00476 * 16 14 12 18 18 H 1.48496 * 109.46690 * 210.00029 * 16 14 12 19 19 H 1.48498 * 109.47171 * 330.00226 * 16 14 12 20 20 C 1.46498 * 120.00377 * 0.02562 * 10 8 7 21 21 C 1.50704 * 109.47158 * 270.00187 * 20 10 8 22 22 C 1.34508 * 125.78966 * 89.71164 * 21 20 10 23 23 C 1.41389 * 106.84038 * 179.89105 * 22 21 20 24 24 C 1.34515 * 106.83869 * 0.37096 * 23 22 21 25 25 O 1.34298 * 125.78736 * 270.01953 * 21 20 10 26 26 N 1.37414 * 107.24222 * 0.26350 * 6 5 4 27 27 H 0.96999 * 126.37065 * 179.71703 * 26 6 5 28 28 H 1.09002 * 109.46793 * 60.00463 * 1 2 3 29 29 H 1.08999 * 109.46915 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47312 * 300.00522 * 1 2 3 31 31 H 1.09004 * 109.47706 * 239.99531 * 2 1 3 32 32 H 1.09003 * 109.47298 * 119.99688 * 2 1 3 33 33 H 1.07998 * 125.52671 * 359.97438 * 4 3 2 34 34 H 1.08001 * 125.87681 * 180.02562 * 5 4 3 35 35 H 1.09001 * 109.47060 * 210.00357 * 11 10 8 36 36 H 1.09004 * 109.47073 * 329.99846 * 11 10 8 37 37 H 0.96997 * 119.99752 * 179.97438 * 15 14 12 38 38 H 1.08997 * 109.46694 * 29.99578 * 20 10 8 39 39 H 1.08995 * 109.47258 * 149.99854 * 20 10 8 40 40 H 1.07998 * 126.58421 * 0.02562 * 22 21 20 41 41 H 1.07997 * 126.57555 * 180.16762 * 23 22 21 42 42 H 1.07998 * 125.78768 * 179.74826 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1943 2.1668 1.1018 5 6 2.6563 3.3729 0.7107 6 6 2.7831 3.3631 -0.6957 7 7 3.2085 4.3671 -1.4561 8 6 3.5671 5.5272 -0.8934 9 8 3.5041 5.6630 0.3157 10 7 3.9979 6.5453 -1.6644 11 6 4.3910 7.8151 -1.0485 12 6 5.8603 7.7783 -0.7153 13 1 6.4429 6.8973 -0.9402 14 6 6.4606 8.8696 -0.1242 15 7 5.7510 9.9427 0.1493 16 14 8.2817 8.8237 0.2895 17 1 9.0646 9.3313 -0.8658 18 1 8.5412 9.6771 1.4767 19 1 8.6868 7.4262 0.5863 20 6 4.0731 6.3822 -3.1183 21 6 5.4333 5.8540 -3.4949 22 6 5.7744 4.5564 -3.5908 23 6 7.1359 4.5176 -3.9698 24 6 7.5476 5.7939 -4.0749 25 8 6.5121 6.5990 -3.7861 26 7 2.3797 2.1242 -1.1324 27 1 2.3518 1.8197 -2.0529 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.9952 1.8715 2.1213 34 1 2.8899 4.2027 1.3614 35 1 4.1964 8.6318 -1.7437 36 1 3.8152 7.9699 -0.1359 37 1 6.1734 10.7103 0.5654 38 1 3.3070 5.6791 -3.4451 39 1 3.9112 7.3460 -3.6009 40 1 5.1310 3.7071 -3.4144 41 1 7.7319 3.6330 -4.1389 42 1 8.5423 6.1165 -4.3452 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597030641.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:14 Heat of formation + Delta-G solvation = 85.599260 kcal Electronic energy + Delta-G solvation = -26809.976936 eV Core-core repulsion = 22987.802824 eV Total energy + Delta-G solvation = -3822.174112 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.25722 -42.27974 -40.32481 -36.93013 -35.63485 -34.78859 -33.67685 -33.45738 -32.50545 -31.33388 -29.81481 -28.76404 -26.60494 -25.29896 -23.96556 -22.75617 -22.58016 -22.41939 -21.51460 -20.22460 -18.71062 -18.63491 -18.02380 -17.48027 -17.27624 -16.61513 -16.54843 -16.33372 -16.04955 -15.81532 -15.12382 -15.07494 -14.82250 -14.54437 -14.31431 -14.04462 -13.73368 -13.55443 -13.50930 -13.42712 -13.29461 -13.01685 -12.88039 -12.64414 -12.40407 -12.14729 -12.09847 -11.70491 -11.39248 -11.15715 -10.65042 -10.58550 -10.52955 -9.82285 -9.53813 -9.18087 -8.36877 -8.11070 -6.26495 0.28554 0.51967 0.96360 1.31937 1.36141 1.46683 1.68312 1.84986 2.36340 2.37927 2.48050 2.96695 3.12691 3.26688 3.84086 3.96136 4.03019 4.13113 4.16864 4.25648 4.32642 4.44545 4.49311 4.58072 4.61282 4.76218 4.90388 4.96824 5.03600 5.09529 5.17681 5.28471 5.31161 5.34532 5.37450 5.66599 5.80404 5.84672 6.00168 6.11511 6.17579 6.45227 6.48692 6.79143 6.93046 7.13558 7.38762 8.23146 8.92153 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.013806 B = 0.004058 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.591690 B = 6897.530943 C = 7995.804901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.124 3.876 3 N -0.373 5.373 4 C 0.189 3.811 5 C -0.356 4.356 6 C 0.470 3.530 7 N -0.692 5.692 8 C 0.674 3.326 9 O -0.657 6.657 10 N -0.596 5.596 11 C 0.277 3.723 12 C -0.516 4.516 13 H 0.036 0.964 14 C 0.007 3.993 15 N -0.930 5.930 16 Si 0.962 3.038 17 H -0.264 1.264 18 H -0.274 1.274 19 H -0.280 1.280 20 C 0.210 3.790 21 C -0.027 4.027 22 C -0.201 4.201 23 C -0.226 4.226 24 C -0.059 4.059 25 O -0.191 6.191 26 N -0.471 5.471 27 H 0.457 0.543 28 H 0.046 0.954 29 H 0.101 0.899 30 H 0.063 0.937 31 H 0.111 0.889 32 H 0.138 0.862 33 H 0.241 0.759 34 H 0.146 0.854 35 H 0.019 0.981 36 H 0.000 1.000 37 H 0.266 0.734 38 H 0.127 0.873 39 H 0.079 0.921 40 H 0.152 0.848 41 H 0.170 0.830 42 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.107 -27.178 -4.399 28.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.006 3.994 3 N -0.163 5.163 4 C 0.049 3.951 5 C -0.389 4.389 6 C 0.213 3.787 7 N -0.453 5.453 8 C 0.375 3.625 9 O -0.541 6.541 10 N -0.328 5.328 11 C 0.155 3.845 12 C -0.555 4.555 13 H 0.054 0.946 14 C -0.191 4.191 15 N -0.571 5.571 16 Si 0.786 3.214 17 H -0.189 1.189 18 H -0.199 1.199 19 H -0.205 1.205 20 C 0.086 3.914 21 C -0.079 4.079 22 C -0.221 4.221 23 C -0.245 4.245 24 C -0.127 4.127 25 O -0.087 6.087 26 N -0.198 5.198 27 H 0.307 0.693 28 H 0.066 0.934 29 H 0.120 0.880 30 H 0.083 0.917 31 H 0.129 0.871 32 H 0.156 0.844 33 H 0.257 0.743 34 H 0.163 0.837 35 H 0.037 0.963 36 H 0.018 0.982 37 H 0.075 0.925 38 H 0.145 0.855 39 H 0.097 0.903 40 H 0.170 0.830 41 H 0.188 0.812 42 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -9.158 -26.851 -4.663 28.750 hybrid contribution 1.032 0.624 0.583 1.339 sum -8.126 -26.227 -4.080 27.759 Atomic orbital electron populations 1.22319 0.93976 1.04430 1.02683 1.22426 0.95310 0.73952 1.07696 1.47310 1.60729 1.11858 0.96439 1.23276 0.90367 0.88251 0.93201 1.22338 1.19220 1.01921 0.95393 1.18981 0.84780 0.84667 0.90290 1.68119 1.38919 1.01288 1.37020 1.16959 0.78015 0.84054 0.83506 1.90685 1.62060 1.84620 1.16749 1.47109 1.66114 1.13417 1.06181 1.18654 0.94106 0.79678 0.92069 1.21486 0.94960 0.99760 1.39322 0.94552 1.25765 1.02991 0.94897 0.95445 1.70053 1.37700 1.05278 1.44023 0.85507 0.79864 0.77640 0.78348 1.18885 1.19894 1.20536 1.19781 0.89151 1.01907 0.80549 1.23272 0.90003 0.90769 1.03862 1.21680 0.96942 0.96288 1.07191 1.22084 0.95913 0.98295 1.08236 1.24684 0.93160 0.89680 1.05162 1.84093 1.18861 1.38859 1.66848 1.44093 1.64063 1.08108 1.03565 0.69319 0.93448 0.88036 0.91747 0.87110 0.84385 0.74254 0.83699 0.96335 0.98163 0.92548 0.85513 0.90270 0.83034 0.81230 0.75764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.32 10.24 71.98 0.74 0.42 16 2 C 0.12 0.17 7.16 86.38 0.62 0.79 16 3 N -0.37 -4.61 3.65 -347.10 -1.27 -5.88 16 4 C 0.19 3.14 11.45 83.22 0.95 4.09 16 5 C -0.36 -11.62 9.52 22.25 0.21 -11.40 16 6 C 0.47 15.90 8.07 133.95 1.08 16.98 16 7 N -0.69 -29.24 9.23 -322.55 -2.98 -32.22 16 8 C 0.67 36.03 8.19 179.35 1.47 37.50 16 9 O -0.66 -39.72 12.84 -4.79 -0.06 -39.78 16 10 N -0.60 -31.99 2.44 -849.18 -2.07 -34.06 16 11 C 0.28 17.29 5.20 85.63 0.45 17.74 16 12 C -0.52 -33.75 9.39 25.60 0.24 -33.51 16 13 H 0.04 2.46 7.81 -2.91 -0.02 2.44 16 14 C 0.01 0.43 5.46 84.65 0.46 0.90 16 15 N -0.93 -60.76 13.29 21.45 0.28 -60.48 16 16 Si 0.96 49.73 29.54 68.60 2.03 51.76 16 17 H -0.26 -12.82 7.11 99.48 0.71 -12.11 16 18 H -0.27 -13.48 7.11 99.48 0.71 -12.77 16 19 H -0.28 -14.55 7.11 99.48 0.71 -13.85 16 20 C 0.21 9.17 5.95 85.63 0.51 9.68 16 21 C -0.03 -1.20 6.90 24.83 0.17 -1.02 16 22 C -0.20 -7.67 10.81 22.19 0.24 -7.43 16 23 C -0.23 -7.62 10.91 22.19 0.24 -7.37 16 24 C -0.06 -2.12 12.09 66.97 0.81 -1.31 16 25 O -0.19 -8.60 10.65 -2.46 -0.03 -8.63 16 26 N -0.47 -9.31 7.38 -54.79 -0.40 -9.71 16 27 H 0.46 6.44 8.96 -213.28 -1.91 4.53 16 28 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.10 -0.21 8.14 -2.39 -0.02 -0.23 16 30 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.11 -0.15 8.14 -2.38 -0.02 -0.17 16 32 H 0.14 -0.55 8.14 -2.39 -0.02 -0.57 16 33 H 0.24 1.32 8.06 -2.91 -0.02 1.30 16 34 H 0.15 6.25 5.77 -2.91 -0.02 6.24 16 35 H 0.02 1.17 7.89 -2.39 -0.02 1.16 16 36 H 0.00 0.02 7.42 -2.38 -0.02 0.00 16 37 H 0.27 16.17 8.31 -92.71 -0.77 15.39 16 38 H 0.13 4.81 7.31 -2.39 -0.02 4.79 16 39 H 0.08 3.32 7.89 -2.39 -0.02 3.30 16 40 H 0.15 5.33 8.06 -2.91 -0.02 5.31 16 41 H 0.17 4.38 8.06 -2.91 -0.02 4.36 16 42 H 0.23 5.97 8.06 -2.91 -0.02 5.95 16 Total: -1.00 -100.29 365.98 2.83 -97.46 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -0.86 Total: 15.50 kcal Atomic # 6 Polarization: 17.85 SS G_CDS: 8.19 Total: 26.04 kcal Atomic # 7 Polarization: -135.92 SS G_CDS: -6.43 Total: -142.35 kcal Atomic # 8 Polarization: -48.32 SS G_CDS: -0.09 Total: -48.41 kcal Atomic # 14 Polarization: 49.73 SS G_CDS: 2.03 Total: 51.76 kcal Total: -100.29 2.83 -97.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597030641.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.057 kcal (2) G-P(sol) polarization free energy of solvation -100.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds