Wall clock time and date at job start Tue Mar 31 2020 13:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47304 * 2 1 4 4 N 1.46499 * 109.46783 * 119.99854 * 2 1 3 5 5 C 1.34782 * 120.00306 * 275.00110 * 4 2 1 6 6 O 1.21594 * 119.99412 * 359.97438 * 5 4 2 7 7 N 1.34774 * 120.00437 * 180.02562 * 5 4 2 8 8 C 1.46493 * 119.99943 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.46925 * 179.97438 * 8 7 5 10 10 C 1.50706 * 109.47268 * 179.97438 * 9 8 7 11 11 H 1.07998 * 119.99472 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00094 * 179.97438 * 10 9 8 13 13 N 1.31513 * 119.99809 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99861 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47047 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.46837 * 120.00132 * 14 12 10 17 17 H 1.48491 * 109.47270 * 239.99984 * 14 12 10 18 18 C 1.50698 * 109.47277 * 239.99999 * 2 1 3 19 19 C 1.38724 * 119.78002 * 279.99897 * 18 2 1 20 20 C 1.37661 * 120.50277 * 179.97438 * 19 18 2 21 21 C 1.39704 * 119.77948 * 0.02562 * 20 19 18 22 22 N 1.35908 * 133.44925 * 179.97438 * 21 20 19 23 23 C 1.30761 * 109.61955 * 180.02562 * 22 21 20 24 24 O 1.35279 * 125.02575 * 180.02562 * 23 22 21 25 25 N 1.36386 * 109.93697 * 0.27030 * 23 22 21 26 26 H 0.96993 * 126.36081 * 179.72688 * 25 23 22 27 27 C 1.38450 * 107.26777 * 359.57462 * 25 23 22 28 28 C 1.37923 * 119.78297 * 100.02462 * 18 2 1 29 29 H 1.09004 * 109.46828 * 59.99877 * 1 2 3 30 30 H 1.08993 * 109.47481 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47432 * 300.00412 * 1 2 3 32 32 H 0.96998 * 120.00098 * 95.00107 * 4 2 1 33 33 H 0.96996 * 119.99451 * 359.97438 * 7 5 4 34 34 H 1.08999 * 109.47285 * 299.99673 * 8 7 5 35 35 H 1.09000 * 109.47398 * 59.99830 * 8 7 5 36 36 H 1.08996 * 109.47433 * 299.99877 * 9 8 7 37 37 H 1.09004 * 109.47483 * 60.00128 * 9 8 7 38 38 H 0.97008 * 119.99845 * 179.97438 * 13 12 10 39 39 H 1.08006 * 119.75213 * 0.03060 * 19 18 2 40 40 H 1.08007 * 120.11528 * 179.97438 * 20 19 18 41 41 H 0.96700 * 114.00116 * 90.03000 * 24 23 22 42 42 H 1.08000 * 120.08296 * 0.02562 * 28 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.1469 -0.0182 2.3572 6 8 1.8582 1.1617 2.4116 7 7 2.5966 -0.6534 3.4576 8 6 2.7369 0.0776 4.7193 9 6 3.2611 -0.8687 5.8013 10 6 3.4062 -0.1166 7.0992 11 1 3.1496 0.9314 7.1475 12 6 3.8653 -0.7666 8.2251 13 7 4.1771 -2.0429 8.1663 14 14 4.0443 0.1655 9.8340 15 1 3.6303 1.5778 9.6365 16 1 3.1832 -0.4623 10.8682 17 1 5.4611 0.1217 10.2764 18 6 2.0324 -0.7104 -1.2304 19 6 2.0649 -2.0969 -1.2605 20 6 2.5205 -2.7611 -2.3769 21 6 2.9539 -2.0339 -3.4882 22 7 3.4453 -2.3898 -4.7044 23 6 3.7091 -1.3162 -5.4026 24 8 4.2108 -1.3109 -6.6589 25 7 3.4085 -0.2026 -4.6748 26 1 3.5153 0.7179 -4.9614 27 6 2.9195 -0.6303 -3.4522 28 6 2.4572 0.0222 -2.3190 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 2.2489 -1.6317 1.1527 33 1 2.8272 -1.5945 3.4140 34 1 3.4381 0.9014 4.5859 35 1 1.7664 0.4717 5.0209 36 1 2.5597 -1.6922 5.9347 37 1 4.2316 -1.2631 5.5001 38 1 4.5005 -2.5002 8.9583 39 1 1.7295 -2.6597 -0.4018 40 1 2.5435 -3.8408 -2.3933 41 1 3.5364 -1.3204 -7.3519 42 1 2.4301 1.1015 -2.2891 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612380053.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:33 Heat of formation + Delta-G solvation = -4.010392 kcal Electronic energy + Delta-G solvation = -25002.382158 eV Core-core repulsion = 21176.322280 eV Total energy + Delta-G solvation = -3826.059878 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.54603 -39.92469 -38.72643 -37.44015 -35.19133 -34.44407 -33.58523 -32.84469 -31.23120 -30.20799 -29.08977 -28.41007 -24.86774 -23.87026 -23.43573 -22.09424 -21.54738 -20.82066 -20.42222 -19.45593 -18.31105 -17.76196 -17.51559 -16.44525 -16.35565 -15.81515 -15.14678 -15.04394 -14.68921 -14.58707 -14.44800 -14.31767 -13.91701 -13.61410 -13.43777 -13.26251 -12.77919 -12.46686 -12.29075 -12.10928 -12.00464 -11.66884 -11.18498 -11.15670 -11.10577 -11.02522 -10.60063 -10.42253 -10.30509 -9.92185 -9.54365 -9.22819 -9.06797 -8.77736 -8.48068 -8.42538 -8.23369 -6.07571 -4.09964 0.44261 1.08237 1.90331 2.19404 3.04508 3.29365 3.29807 3.37462 3.42654 3.45532 3.61541 4.06222 4.38753 4.41059 4.60128 4.69677 4.81812 4.92116 4.98790 5.11170 5.23116 5.29676 5.33927 5.55036 5.65003 5.78334 5.88615 5.99583 6.12759 6.18523 6.25302 6.33263 6.42075 6.42453 6.64977 6.80228 7.02487 7.10556 7.25218 7.31543 7.59346 7.65800 7.91950 8.27926 8.45262 8.95016 9.01768 9.54739 11.04111 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.027158 B = 0.001962 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.737978 B =14270.992153 C =14643.387433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.206 3.794 3 H 0.097 0.903 4 N -0.748 5.748 5 C 0.701 3.299 6 O -0.598 6.598 7 N -0.738 5.738 8 C 0.140 3.860 9 C 0.012 3.988 10 C -0.519 4.519 11 H 0.060 0.940 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.896 3.104 15 H -0.271 1.271 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.064 4.064 19 C -0.115 4.115 20 C -0.058 4.058 21 C 0.056 3.944 22 N -0.485 5.485 23 C 0.450 3.550 24 O -0.443 6.443 25 N -0.602 5.602 26 H 0.423 0.577 27 C 0.061 3.939 28 C -0.098 4.098 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.394 0.606 33 H 0.393 0.607 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.261 0.739 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.410 0.590 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.407 0.382 -29.619 30.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.100 3.900 3 H 0.115 0.885 4 N -0.405 5.405 5 C 0.400 3.600 6 O -0.477 6.477 7 N -0.391 5.391 8 C 0.018 3.982 9 C -0.026 4.026 10 C -0.558 4.558 11 H 0.078 0.922 12 C -0.144 4.144 13 N -0.533 5.533 14 Si 0.724 3.276 15 H -0.196 1.196 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.066 4.066 19 C -0.135 4.135 20 C -0.078 4.078 21 C -0.062 4.062 22 N -0.216 5.216 23 C 0.146 3.854 24 O -0.245 6.245 25 N -0.226 5.226 26 H 0.263 0.737 27 C -0.048 4.048 28 C -0.119 4.119 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.229 0.771 33 H 0.226 0.774 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.041 0.959 37 H 0.040 0.960 38 H 0.071 0.929 39 H 0.151 0.849 40 H 0.153 0.847 41 H 0.269 0.731 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.902 0.462 -29.506 29.914 hybrid contribution 0.042 0.784 0.440 0.900 sum -4.860 1.246 -29.066 29.496 Atomic orbital electron populations 1.22197 0.94293 1.02474 1.02752 1.19488 0.93919 0.96385 0.80230 0.88539 1.45266 1.72867 1.13606 1.08796 1.16034 0.78492 0.85149 0.80286 1.90883 1.57649 1.14446 1.84711 1.45534 1.69691 1.13973 1.09945 1.21584 1.00376 0.95573 0.80701 1.19336 0.96608 0.94647 0.91966 1.21095 1.44113 0.96648 0.93968 0.92169 1.25001 0.95255 0.94924 0.99193 1.69968 1.44695 1.09158 1.29499 0.86458 0.77706 0.80126 0.83288 1.19580 1.20968 1.20975 1.19709 0.98552 0.93703 0.94665 1.20736 1.01156 0.93488 0.98137 1.20256 0.97539 1.00015 0.89963 1.18816 1.03590 0.90383 0.93426 1.70683 1.20157 1.25838 1.04958 1.20337 0.96343 0.81693 0.87047 1.84843 1.34619 1.94540 1.10454 1.43399 1.55400 1.09985 1.13862 0.73722 1.18536 1.03254 0.95120 0.87891 1.19701 1.02001 0.99756 0.90459 0.91800 0.92229 0.91193 0.77121 0.77370 0.92805 0.92773 0.95939 0.95957 0.92934 0.84853 0.84692 0.73140 0.85277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.46 37.16 0.35 -1.20 16 2 C 0.21 2.19 2.77 -69.08 -0.19 1.99 16 3 H 0.10 1.17 7.42 -51.93 -0.39 0.78 16 4 N -0.75 -9.10 5.03 -59.81 -0.30 -9.40 16 5 C 0.70 11.89 8.53 -86.92 -0.74 11.15 16 6 O -0.60 -12.41 16.01 5.28 0.08 -12.33 16 7 N -0.74 -12.88 5.56 -65.23 -0.36 -13.24 16 8 C 0.14 3.00 5.61 -4.05 -0.02 2.98 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.15 16 10 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 11 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 13 N -0.89 -26.14 13.29 55.43 0.74 -25.41 16 14 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 15 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 C -0.06 -0.58 4.96 -104.56 -0.52 -1.10 16 19 C -0.11 -0.96 9.02 -39.61 -0.36 -1.32 16 20 C -0.06 -0.54 10.10 -39.24 -0.40 -0.93 16 21 C 0.06 0.60 7.22 -84.68 -0.61 -0.01 16 22 N -0.48 -5.49 11.31 -12.24 -0.14 -5.63 16 23 C 0.45 3.83 9.39 -88.92 -0.84 3.00 16 24 O -0.44 -2.51 13.63 -17.53 -0.24 -2.75 16 25 N -0.60 -4.24 6.26 -11.90 -0.07 -4.31 16 26 H 0.42 1.59 8.96 -40.82 -0.37 1.22 16 27 C 0.06 0.56 7.30 -83.87 -0.61 -0.05 16 28 C -0.10 -0.84 9.67 -39.53 -0.38 -1.22 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.39 3.81 6.86 -40.82 -0.28 3.53 16 33 H 0.39 5.89 8.49 -40.82 -0.35 5.54 16 34 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 39 H 0.13 0.88 6.89 -52.48 -0.36 0.52 16 40 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 41 H 0.41 0.02 9.06 45.56 0.41 0.43 16 42 H 0.13 0.88 8.03 -52.49 -0.42 0.46 16 LS Contribution 362.44 15.07 5.46 5.46 Total: -1.00 -36.47 362.44 -9.39 -45.87 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -4.67 Total: 5.11 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -4.87 Total: 0.23 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: -0.14 Total: -57.99 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.15 Total: -15.07 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.47 -9.39 -45.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612380053.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.857 kcal (2) G-P(sol) polarization free energy of solvation -36.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds