Wall clock time and date at job start Tue Mar 31 2020 14:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47225 * 2 1 4 4 C 1.46500 * 120.00005 * 274.81607 * 3 2 1 5 5 C 1.50706 * 109.47181 * 263.76069 * 4 3 2 6 6 H 1.08000 * 119.99494 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00147 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99809 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00329 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47312 * 89.99597 * 9 7 5 11 11 H 1.48500 * 109.47357 * 209.99861 * 9 7 5 12 12 H 1.48507 * 109.47139 * 330.00007 * 9 7 5 13 13 C 1.34775 * 120.00231 * 94.82059 * 3 2 1 14 14 O 1.21356 * 119.99942 * 354.60775 * 13 3 2 15 15 C 1.49358 * 120.00237 * 174.61739 * 13 3 2 16 16 O 1.21369 * 119.99691 * 0.22697 * 15 13 3 17 17 N 1.34778 * 119.99974 * 180.23355 * 15 13 3 18 18 C 1.39777 * 119.99595 * 184.95966 * 17 15 13 19 19 C 1.39295 * 120.87357 * 325.21717 * 18 17 15 20 20 N 1.32258 * 119.00171 * 179.76736 * 19 18 17 21 21 C 1.31795 * 120.90137 * 0.53299 * 20 19 18 22 22 C 1.50704 * 119.03285 * 179.70260 * 21 20 19 23 23 C 1.52999 * 117.49810 * 8.64031 * 22 21 20 24 24 C 1.52995 * 117.49910 * 300.01730 * 22 21 20 25 25 N 1.31811 * 121.93918 * 359.71934 * 21 20 19 26 26 C 1.32251 * 120.89622 * 0.02562 * 25 21 20 27 27 H 1.09000 * 109.46989 * 300.00541 * 1 2 3 28 28 H 1.09006 * 109.47032 * 59.99760 * 1 2 3 29 29 H 1.08993 * 109.47186 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47165 * 239.99928 * 2 1 3 31 31 H 1.09002 * 109.47201 * 119.99758 * 2 1 3 32 32 H 1.08997 * 109.46864 * 23.75761 * 4 3 2 33 33 H 1.08994 * 109.47045 * 143.75998 * 4 3 2 34 34 H 0.96999 * 119.99745 * 179.97438 * 8 7 5 35 35 H 0.96997 * 119.99819 * 4.95184 * 17 15 13 36 36 H 1.07994 * 120.49915 * 0.03526 * 19 18 17 37 37 H 1.08999 * 115.55262 * 154.34670 * 22 21 20 38 38 H 1.09003 * 117.49423 * 0.02562 * 23 22 21 39 39 H 1.08995 * 117.49966 * 145.01836 * 23 22 21 40 40 H 1.08999 * 117.50362 * 214.97442 * 24 22 21 41 41 H 1.09002 * 117.49927 * 0.02562 * 24 22 21 42 42 H 1.07995 * 120.49855 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1621 2.1073 -1.2642 5 6 3.5890 2.0111 -1.7394 6 1 4.3161 1.4641 -1.1576 7 6 3.9662 2.6212 -2.9168 8 7 3.0806 3.2869 -3.6256 9 14 5.7350 2.5026 -3.5055 10 1 5.8906 1.3031 -4.3670 11 1 6.0804 3.7192 -4.2838 12 1 6.6403 2.3910 -2.3336 13 6 2.3355 1.9839 1.1630 14 8 2.1248 1.4191 2.2163 15 6 2.9459 3.3470 1.1557 16 8 3.1526 3.9136 0.1025 17 7 3.2674 3.9477 2.3186 18 6 3.7417 5.2625 2.3182 19 6 4.5455 5.7321 1.2820 20 7 4.9700 6.9842 1.3167 21 6 4.6509 7.7796 2.3180 22 6 5.1632 9.1969 2.3182 23 6 5.8615 9.6958 1.0515 24 6 6.6796 9.3999 2.3101 25 7 3.8971 7.3718 3.3195 26 6 3.4284 6.1357 3.3572 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.5000 1.6701 -2.0116 33 1 1.8991 3.1543 -1.1138 34 1 3.3460 3.7165 -4.4538 35 1 3.1694 3.4676 3.1557 36 1 4.8144 5.0848 0.4604 37 1 4.5625 9.9139 2.8777 38 1 5.9499 8.9990 0.2179 39 1 5.7201 10.7412 0.7774 40 1 7.0766 10.2507 2.8638 41 1 7.3068 8.5083 2.3042 42 1 2.8117 5.8083 4.1811 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615079762.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:52 Heat of formation + Delta-G solvation = 6.857776 kcal Electronic energy + Delta-G solvation = -26632.046296 eV Core-core repulsion = 22806.457697 eV Total energy + Delta-G solvation = -3825.588599 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.62919 -41.60843 -39.72979 -38.08490 -37.41461 -35.99339 -34.83601 -34.68857 -32.07115 -31.49609 -29.06578 -27.08524 -25.96628 -25.32305 -25.01668 -23.25154 -23.14043 -22.16482 -21.06514 -19.34255 -18.71257 -18.57720 -18.24442 -17.94265 -17.42833 -16.83743 -16.65535 -16.28096 -16.00637 -15.81302 -15.29040 -15.12868 -15.00013 -14.69126 -14.49199 -14.29539 -13.65515 -13.44771 -13.26032 -13.16087 -12.77631 -12.72312 -12.63142 -12.43308 -12.36142 -12.31377 -12.10151 -11.95477 -11.80978 -11.69520 -11.44384 -11.39004 -10.69642 -10.42918 -10.15118 -9.69567 -9.49023 -8.15711 -6.23768 -0.42211 -0.06664 0.47337 1.25973 1.37040 1.40067 1.47681 2.13275 2.36416 2.46672 2.52392 2.79908 2.95608 3.19022 3.20417 3.25396 3.45258 3.79270 3.91982 3.99171 4.10674 4.15276 4.34371 4.35211 4.51649 4.69208 4.75074 4.77579 4.79343 4.93889 4.99105 5.01621 5.16137 5.24567 5.30652 5.33692 5.39596 5.51060 5.74176 5.84312 5.95265 6.09534 6.28000 6.68469 6.80193 6.96917 7.01345 7.42613 8.92495 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.011553 B = 0.004430 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.064315 B = 6318.733026 C = 8254.741511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.104 3.896 3 N -0.564 5.564 4 C 0.248 3.752 5 C -0.516 4.516 6 H 0.047 0.953 7 C 0.025 3.975 8 N -0.921 5.921 9 Si 0.946 3.054 10 H -0.269 1.269 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.509 3.491 14 O -0.554 6.554 15 C 0.489 3.511 16 O -0.468 6.468 17 N -0.629 5.629 18 C 0.039 3.961 19 C 0.135 3.865 20 N -0.516 5.516 21 C 0.313 3.687 22 C -0.113 4.113 23 C -0.156 4.156 24 C -0.141 4.141 25 N -0.502 5.502 26 C 0.147 3.853 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.022 0.978 33 H 0.041 0.959 34 H 0.262 0.738 35 H 0.435 0.565 36 H 0.159 0.841 37 H 0.146 0.854 38 H 0.085 0.915 39 H 0.125 0.875 40 H 0.132 0.868 41 H 0.081 0.919 42 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.887 5.534 13.874 14.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.018 4.018 3 N -0.294 5.294 4 C 0.128 3.872 5 C -0.555 4.555 6 H 0.065 0.935 7 C -0.175 4.175 8 N -0.561 5.561 9 Si 0.773 3.227 10 H -0.194 1.194 11 H -0.212 1.212 12 H -0.200 1.200 13 C 0.291 3.709 14 O -0.435 6.435 15 C 0.271 3.729 16 O -0.338 6.338 17 N -0.280 5.280 18 C -0.061 4.061 19 C -0.033 4.033 20 N -0.230 5.230 21 C 0.047 3.953 22 C -0.132 4.132 23 C -0.194 4.194 24 C -0.179 4.179 25 N -0.215 5.215 26 C -0.023 4.023 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.113 0.887 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.040 0.960 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.276 0.724 36 H 0.176 0.824 37 H 0.164 0.836 38 H 0.104 0.896 39 H 0.143 0.857 40 H 0.150 0.850 41 H 0.100 0.900 42 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 1.174 6.577 13.399 14.972 hybrid contribution 0.441 -1.326 -0.598 1.520 sum 1.616 5.251 12.800 13.930 Atomic orbital electron populations 1.22034 0.94130 1.03569 1.01534 1.21709 0.95710 0.80762 1.03599 1.48293 1.59165 1.14735 1.07221 1.19434 0.96304 0.92370 0.79095 1.21358 0.95263 1.32579 1.06293 0.93456 1.25474 1.00540 0.94674 0.96806 1.70010 1.35452 1.35117 1.15507 0.85738 0.81012 0.77680 0.78304 1.19447 1.21243 1.20005 1.19662 0.80310 0.86369 0.84554 1.90652 1.56041 1.66339 1.30475 1.20614 0.80290 0.87931 0.84100 1.91003 1.48237 1.64249 1.30304 1.42797 1.63434 1.11251 1.10550 1.19571 0.98974 0.87393 1.00170 1.23445 0.90163 0.92075 0.97604 1.68174 1.24194 1.04262 1.26418 1.22722 0.91093 0.96466 0.85053 1.20783 0.97354 0.89064 1.06037 1.23064 1.02047 1.02893 0.91399 1.23053 0.89974 1.03882 1.01041 1.68200 1.11327 1.15983 1.26025 1.23715 0.94575 0.86529 0.97484 0.93116 0.93215 0.88718 0.89760 0.89527 0.95993 0.94153 0.92857 0.72442 0.82372 0.83639 0.89638 0.85686 0.84976 0.90040 0.76880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.24 10.24 71.98 0.74 -3.51 16 2 C 0.10 3.40 6.11 86.38 0.53 3.93 16 3 N -0.56 -22.94 2.47 -827.86 -2.05 -24.99 16 4 C 0.25 12.18 4.78 85.63 0.41 12.59 16 5 C -0.52 -27.62 7.80 25.60 0.20 -27.43 16 6 H 0.05 2.55 7.81 -2.91 -0.02 2.52 16 7 C 0.02 1.36 5.46 84.65 0.46 1.82 16 8 N -0.92 -53.63 13.29 21.45 0.28 -53.35 16 9 Si 0.95 44.21 29.54 68.60 2.03 46.24 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 13 C 0.51 19.80 7.67 87.24 0.67 20.47 16 14 O -0.55 -20.62 16.04 -3.27 -0.05 -20.67 16 15 C 0.49 18.78 7.59 87.24 0.66 19.45 16 16 O -0.47 -21.79 9.61 -3.31 -0.03 -21.82 16 17 N -0.63 -18.44 5.35 -304.24 -1.63 -20.06 16 18 C 0.04 1.15 6.35 38.38 0.24 1.40 16 19 C 0.13 4.85 9.98 84.88 0.85 5.69 16 20 N -0.52 -17.75 9.33 -187.33 -1.75 -19.50 16 21 C 0.31 9.19 7.31 138.75 1.01 10.21 16 22 C -0.11 -2.50 6.23 -11.54 -0.07 -2.57 16 23 C -0.16 -3.22 10.01 30.59 0.31 -2.91 16 24 C -0.14 -2.59 10.23 30.59 0.31 -2.27 16 25 N -0.50 -13.61 10.32 -187.34 -1.93 -15.54 16 26 C 0.15 3.52 11.26 84.88 0.96 4.48 16 27 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 29 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.08 2.73 8.11 -2.39 -0.02 2.71 16 31 H 0.09 2.67 7.36 -2.39 -0.02 2.65 16 32 H 0.02 1.13 8.02 -2.39 -0.02 1.11 16 33 H 0.04 2.20 5.83 -2.39 -0.01 2.19 16 34 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 35 H 0.43 9.97 8.30 -92.71 -0.77 9.20 16 36 H 0.16 6.61 6.30 -2.91 -0.02 6.60 16 37 H 0.15 2.65 8.14 -2.39 -0.02 2.63 16 38 H 0.09 2.24 7.53 -2.39 -0.02 2.23 16 39 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.21 3.15 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -67.96 360.93 2.44 -65.52 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: 0.29 Total: 22.83 kcal Atomic # 6 Polarization: 34.07 SS G_CDS: 7.28 Total: 41.34 kcal Atomic # 7 Polarization: -126.37 SS G_CDS: -7.07 Total: -133.44 kcal Atomic # 8 Polarization: -42.41 SS G_CDS: -0.08 Total: -42.49 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -67.96 2.44 -65.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615079762.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.380 kcal (2) G-P(sol) polarization free energy of solvation -67.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds