Wall clock time and date at job start Tue Mar 31 2020 14:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47075 * 120.00055 * 2 1 3 5 5 C 1.50703 * 109.47272 * 295.00105 * 4 2 1 6 6 C 1.38245 * 119.97341 * 90.00042 * 5 4 2 7 7 C 1.38202 * 120.02449 * 180.02562 * 6 5 4 8 8 C 1.38461 * 119.97417 * 0.22692 * 7 6 5 9 9 F 1.35095 * 120.02617 * 179.72591 * 8 7 6 10 10 C 1.38467 * 119.94503 * 359.49951 * 8 7 6 11 11 C 1.38190 * 119.97490 * 0.52561 * 10 8 7 12 12 C 1.50704 * 109.47137 * 240.00165 * 2 1 3 13 13 O 1.21277 * 120.00093 * 254.40065 * 12 2 1 14 14 N 1.34775 * 119.99892 * 74.40316 * 12 2 1 15 15 C 1.46499 * 120.00035 * 4.36066 * 14 12 2 16 16 C 1.50705 * 109.46843 * 95.46635 * 15 14 12 17 17 H 1.07993 * 120.00330 * 359.97438 * 16 15 14 18 18 C 1.37883 * 119.99835 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99872 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 119.99831 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47144 * 89.99827 * 20 18 16 22 22 H 1.48503 * 109.46828 * 209.99742 * 20 18 16 23 23 H 1.48500 * 109.47087 * 329.99379 * 20 18 16 24 24 C 1.46503 * 119.99774 * 184.35996 * 14 12 2 25 25 C 1.53001 * 109.46896 * 84.73241 * 24 14 12 26 26 C 1.47198 * 109.47255 * 179.97438 * 25 24 14 27 27 N 6.96912 * 92.98443 * 244.84168 * 2 1 3 28 28 H 1.09004 * 109.47311 * 67.16533 * 1 2 3 29 29 H 1.09007 * 109.46762 * 187.15648 * 1 2 3 30 30 H 1.09001 * 109.47499 * 307.15838 * 1 2 3 31 31 H 1.09003 * 109.47056 * 175.00297 * 4 2 1 32 32 H 1.08997 * 109.47042 * 55.00428 * 4 2 1 33 33 H 1.07999 * 119.98446 * 359.97438 * 6 5 4 34 34 H 1.07994 * 120.01159 * 179.97438 * 7 6 5 35 35 H 1.08005 * 120.00676 * 180.25153 * 10 8 7 36 36 H 1.08006 * 119.98532 * 179.70110 * 11 10 8 37 37 H 1.08999 * 109.47078 * 215.46368 * 15 14 12 38 38 H 1.08996 * 109.47542 * 335.46282 * 15 14 12 39 39 H 0.97006 * 119.99893 * 180.02562 * 19 18 16 40 40 H 1.09005 * 109.46803 * 204.72966 * 24 14 12 41 41 H 1.08997 * 109.47384 * 324.73312 * 24 14 12 42 42 H 1.08996 * 109.47119 * 300.00072 * 25 24 14 43 43 H 1.09005 * 109.47103 * 60.00131 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0570 2.4766 6 6 0.4353 -0.2055 3.0994 7 6 0.0684 0.5079 4.2247 8 6 0.9070 1.4892 4.7256 9 9 0.5469 2.1910 5.8223 10 6 2.1173 1.7473 4.1043 11 6 2.4818 1.0330 2.9789 12 6 2.0323 -0.7104 -1.2305 13 8 2.5008 -1.8252 -1.1383 14 7 1.9611 -0.1067 -2.4334 15 6 1.4844 1.2750 -2.5324 16 6 2.6636 2.2135 -2.5440 17 1 3.6675 1.8201 -2.4833 18 6 2.4606 3.5744 -2.6323 19 7 3.4895 4.3934 -2.6419 20 14 0.7241 4.2549 -2.7367 21 1 0.2124 4.5181 -1.3677 22 1 0.7344 5.5208 -3.5131 23 1 -0.1549 3.2670 -3.4124 24 6 2.3603 -0.8323 -3.6419 25 6 1.1822 -1.6670 -4.1481 26 6 1.5831 -2.3956 -5.3627 27 7 1.8928 -2.9587 -6.2995 28 1 -0.3634 0.3988 -0.9471 29 1 -0.3633 -1.0197 0.1280 30 1 -0.3634 0.6207 0.8190 31 1 3.1263 -0.7994 1.2056 32 1 1.6054 -1.7198 1.2951 33 1 -0.2207 -0.9679 2.7058 34 1 -0.8740 0.3029 4.7108 35 1 2.7741 2.5097 4.4966 36 1 3.4236 1.2375 2.4913 37 1 0.9137 1.3973 -3.4530 38 1 0.8478 1.5020 -1.6774 39 1 3.3467 5.3509 -2.7036 40 1 2.6584 -0.1202 -4.4114 41 1 3.1985 -1.4896 -3.4108 42 1 0.8842 -2.3790 -3.3786 43 1 0.3439 -1.0096 -4.3793 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000742360758.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:49 Heat of formation + Delta-G solvation = -42.398404 kcal Electronic energy + Delta-G solvation = -26242.935843 eV Core-core repulsion = 22395.291374 eV Total energy + Delta-G solvation = -3847.644469 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.91070 -39.99807 -38.99160 -36.78591 -35.40796 -34.71108 -32.82659 -31.53973 -31.18362 -30.17541 -27.90611 -26.51689 -24.78274 -23.12902 -22.95488 -22.19120 -20.74852 -18.25280 -17.69974 -17.63765 -16.99450 -16.81353 -16.33558 -15.73798 -15.56928 -15.36497 -14.91576 -14.56560 -14.38282 -14.05851 -13.90615 -13.72499 -13.53545 -13.27534 -13.01554 -12.68012 -12.60744 -12.40898 -12.35964 -12.10547 -11.98485 -11.84259 -11.61243 -11.34686 -11.15078 -11.08974 -10.95025 -10.77319 -10.73253 -10.56432 -10.37046 -9.71436 -9.23628 -9.10420 -8.80195 -8.51487 -7.99726 -6.29746 -4.32504 1.11231 1.20741 2.76836 2.87941 3.10937 3.14786 3.17047 3.21198 3.46818 3.63580 4.18386 4.23687 4.26658 4.67929 4.74188 4.85535 5.00338 5.08107 5.11587 5.17742 5.25110 5.26605 5.32264 5.38840 5.56102 5.68347 5.77503 5.87106 5.93545 5.98641 5.99932 6.08543 6.13707 6.17874 6.21923 6.26019 6.32719 6.41390 6.55713 6.62393 6.87714 7.12183 7.34222 7.64035 7.93164 8.29312 8.67841 8.78358 9.28711 10.82729 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.010483 B = 0.004176 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.466183 B = 6703.581328 C = 8544.954758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 H 0.112 0.888 4 C -0.060 4.060 5 C -0.082 4.082 6 C -0.087 4.087 7 C -0.155 4.155 8 C 0.086 3.914 9 F -0.145 7.145 10 C -0.150 4.150 11 C -0.083 4.083 12 C 0.526 3.474 13 O -0.564 6.564 14 N -0.589 5.589 15 C 0.201 3.799 16 C -0.545 4.545 17 H 0.079 0.921 18 C 0.079 3.921 19 N -0.888 5.888 20 Si 0.867 3.133 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.263 1.263 24 C 0.126 3.874 25 C -0.045 4.045 26 C 0.220 3.780 27 N -0.447 5.447 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.132 0.868 34 H 0.131 0.869 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.034 0.966 38 H 0.042 0.958 39 H 0.267 0.733 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.109 0.891 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.260 -6.481 10.535 14.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 H 0.130 0.870 4 C -0.098 4.098 5 C -0.082 4.082 6 C -0.106 4.106 7 C -0.174 4.174 8 C 0.067 3.933 9 F -0.124 7.124 10 C -0.169 4.169 11 C -0.101 4.101 12 C 0.315 3.685 13 O -0.444 6.444 14 N -0.318 5.318 15 C 0.080 3.920 16 C -0.583 4.583 17 H 0.097 0.903 18 C -0.126 4.126 19 N -0.525 5.525 20 Si 0.693 3.307 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.187 1.187 24 C 0.000 4.000 25 C -0.087 4.087 26 C -0.098 4.098 27 N -0.125 5.125 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.151 0.849 36 H 0.154 0.846 37 H 0.052 0.948 38 H 0.059 0.941 39 H 0.077 0.923 40 H 0.111 0.889 41 H 0.101 0.899 42 H 0.127 0.873 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -7.515 -7.649 9.194 14.125 hybrid contribution -1.018 1.228 0.459 1.660 sum -8.533 -6.421 9.653 14.396 Atomic orbital electron populations 1.21892 0.93302 1.02094 1.03034 1.21255 0.97337 1.02297 0.91931 0.87002 1.20421 1.02159 0.97833 0.89344 1.20025 0.94359 0.96875 0.96931 1.20945 0.96087 0.99222 0.94296 1.21092 1.00441 0.97291 0.98583 1.17732 0.95371 0.94155 0.86052 1.91476 1.91947 1.77543 1.51432 1.21160 0.96001 1.02130 0.97620 1.21056 1.00146 0.94291 0.94581 1.20458 0.77786 0.85626 0.84671 1.90620 1.46832 1.20524 1.86433 1.47861 1.64108 1.14898 1.04964 1.20023 0.96251 0.77696 0.97998 1.21350 0.93837 0.90512 1.52627 0.90273 1.24866 0.96700 0.96818 0.94178 1.69882 1.30093 1.03584 1.48941 0.86996 0.85261 0.79437 0.79010 1.19700 1.20871 1.18731 1.21126 0.94868 0.95650 0.88323 1.19772 1.01291 0.98533 0.89074 1.29066 0.93204 0.93287 0.94266 1.81190 1.08911 1.10377 1.11998 0.91528 0.92381 0.91560 0.90174 0.90146 0.85022 0.85070 0.84853 0.84591 0.94836 0.94060 0.92272 0.88908 0.89937 0.87292 0.87273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.09 37.16 0.30 -1.44 16 2 C -0.11 -1.54 1.85 -91.77 -0.17 -1.71 16 3 H 0.11 1.83 7.25 -51.93 -0.38 1.46 16 4 C -0.06 -0.76 4.16 -27.88 -0.12 -0.88 16 5 C -0.08 -0.96 4.72 -104.62 -0.49 -1.45 16 6 C -0.09 -0.91 8.15 -39.59 -0.32 -1.23 16 7 C -0.16 -1.65 10.03 -39.51 -0.40 -2.04 16 8 C 0.09 1.03 7.30 -39.41 -0.29 0.74 16 9 F -0.15 -1.83 17.27 2.25 0.04 -1.79 16 10 C -0.15 -1.77 10.03 -39.51 -0.40 -2.16 16 11 C -0.08 -0.99 9.70 -39.60 -0.38 -1.38 16 12 C 0.53 8.73 6.85 -10.98 -0.08 8.66 16 13 O -0.56 -10.35 15.72 5.56 0.09 -10.26 16 14 N -0.59 -9.88 2.47 -175.06 -0.43 -10.31 16 15 C 0.20 3.78 3.62 -5.19 -0.02 3.76 16 16 C -0.55 -13.04 9.93 -34.44 -0.34 -13.39 16 17 H 0.08 2.16 8.06 -52.49 -0.42 1.73 16 18 C 0.08 1.98 5.47 -17.82 -0.10 1.88 16 19 N -0.89 -24.53 13.96 55.43 0.77 -23.76 16 20 Si 0.87 18.39 27.47 -169.99 -4.67 13.72 16 21 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.26 -5.13 6.54 56.52 0.37 -4.76 16 24 C 0.13 1.87 5.37 -4.04 -0.02 1.84 16 25 C -0.05 -0.53 5.99 -29.52 -0.18 -0.70 16 26 C 0.22 2.98 15.43 -20.76 -0.32 2.66 16 27 N -0.45 -7.18 18.54 42.15 0.78 -6.40 16 28 H 0.07 0.82 6.32 -51.93 -0.33 0.49 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.74 6.75 -51.93 -0.35 0.39 16 31 H 0.08 1.09 8.08 -51.93 -0.42 0.67 16 32 H 0.08 0.97 8.03 -51.93 -0.42 0.56 16 33 H 0.13 1.11 8.04 -52.49 -0.42 0.69 16 34 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.13 1.37 8.06 -52.48 -0.42 0.94 16 36 H 0.14 1.56 8.06 -52.48 -0.42 1.13 16 37 H 0.03 0.61 7.17 -51.93 -0.37 0.24 16 38 H 0.04 0.74 4.01 -51.93 -0.21 0.53 16 39 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 40 H 0.09 1.42 8.03 -51.93 -0.42 1.00 16 41 H 0.08 1.29 7.53 -51.93 -0.39 0.90 16 42 H 0.11 1.20 8.14 -51.93 -0.42 0.77 16 43 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 369.04 15.07 5.56 5.56 Total: -1.00 -29.22 369.04 -7.01 -36.22 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -5.83 Total: 3.85 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -3.32 Total: -6.83 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: 1.12 Total: -40.47 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.09 Total: -10.26 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -4.67 Total: 13.72 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.22 -7.01 -36.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742360758.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.175 kcal (2) G-P(sol) polarization free energy of solvation -29.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds