Wall clock time and date at job start Tue Mar 31 2020 14:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47075 * 120.00055 * 2 1 3 5 5 C 1.50703 * 109.47272 * 295.00105 * 4 2 1 6 6 C 1.38245 * 119.97341 * 90.00042 * 5 4 2 7 7 C 1.38202 * 120.02449 * 180.02562 * 6 5 4 8 8 C 1.38461 * 119.97417 * 0.22692 * 7 6 5 9 9 F 1.35095 * 120.02617 * 179.72591 * 8 7 6 10 10 C 1.38467 * 119.94503 * 359.49951 * 8 7 6 11 11 C 1.38190 * 119.97490 * 0.52561 * 10 8 7 12 12 C 1.50704 * 109.47137 * 240.00165 * 2 1 3 13 13 O 1.21277 * 120.00093 * 254.40065 * 12 2 1 14 14 N 1.34775 * 119.99892 * 74.40316 * 12 2 1 15 15 C 1.46499 * 120.00035 * 4.36066 * 14 12 2 16 16 C 1.50705 * 109.46843 * 95.46635 * 15 14 12 17 17 H 1.07993 * 120.00330 * 359.97438 * 16 15 14 18 18 C 1.37883 * 119.99835 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99872 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 119.99831 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47144 * 89.99827 * 20 18 16 22 22 H 1.48503 * 109.46828 * 209.99742 * 20 18 16 23 23 H 1.48500 * 109.47087 * 329.99379 * 20 18 16 24 24 C 1.46503 * 119.99774 * 184.35996 * 14 12 2 25 25 C 1.53001 * 109.46896 * 84.73241 * 24 14 12 26 26 C 1.47198 * 109.47255 * 179.97438 * 25 24 14 27 27 N 6.96912 * 92.98443 * 244.84168 * 2 1 3 28 28 H 1.09004 * 109.47311 * 67.16533 * 1 2 3 29 29 H 1.09007 * 109.46762 * 187.15648 * 1 2 3 30 30 H 1.09001 * 109.47499 * 307.15838 * 1 2 3 31 31 H 1.09003 * 109.47056 * 175.00297 * 4 2 1 32 32 H 1.08997 * 109.47042 * 55.00428 * 4 2 1 33 33 H 1.07999 * 119.98446 * 359.97438 * 6 5 4 34 34 H 1.07994 * 120.01159 * 179.97438 * 7 6 5 35 35 H 1.08005 * 120.00676 * 180.25153 * 10 8 7 36 36 H 1.08006 * 119.98532 * 179.70110 * 11 10 8 37 37 H 1.08999 * 109.47078 * 215.46368 * 15 14 12 38 38 H 1.08996 * 109.47542 * 335.46282 * 15 14 12 39 39 H 0.97006 * 119.99893 * 180.02562 * 19 18 16 40 40 H 1.09005 * 109.46803 * 204.72966 * 24 14 12 41 41 H 1.08997 * 109.47384 * 324.73312 * 24 14 12 42 42 H 1.08996 * 109.47119 * 300.00072 * 25 24 14 43 43 H 1.09005 * 109.47103 * 60.00131 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0570 2.4766 6 6 0.4353 -0.2055 3.0994 7 6 0.0684 0.5079 4.2247 8 6 0.9070 1.4892 4.7256 9 9 0.5469 2.1910 5.8223 10 6 2.1173 1.7473 4.1043 11 6 2.4818 1.0330 2.9789 12 6 2.0323 -0.7104 -1.2305 13 8 2.5008 -1.8252 -1.1383 14 7 1.9611 -0.1067 -2.4334 15 6 1.4844 1.2750 -2.5324 16 6 2.6636 2.2135 -2.5440 17 1 3.6675 1.8201 -2.4833 18 6 2.4606 3.5744 -2.6323 19 7 3.4895 4.3934 -2.6419 20 14 0.7241 4.2549 -2.7367 21 1 0.2124 4.5181 -1.3677 22 1 0.7344 5.5208 -3.5131 23 1 -0.1549 3.2670 -3.4124 24 6 2.3603 -0.8323 -3.6419 25 6 1.1822 -1.6670 -4.1481 26 6 1.5831 -2.3956 -5.3627 27 7 1.8928 -2.9587 -6.2995 28 1 -0.3634 0.3988 -0.9471 29 1 -0.3633 -1.0197 0.1280 30 1 -0.3634 0.6207 0.8190 31 1 3.1263 -0.7994 1.2056 32 1 1.6054 -1.7198 1.2951 33 1 -0.2207 -0.9679 2.7058 34 1 -0.8740 0.3029 4.7108 35 1 2.7741 2.5097 4.4966 36 1 3.4236 1.2375 2.4913 37 1 0.9137 1.3973 -3.4530 38 1 0.8478 1.5020 -1.6774 39 1 3.3467 5.3509 -2.7036 40 1 2.6584 -0.1202 -4.4114 41 1 3.1985 -1.4896 -3.4108 42 1 0.8842 -2.3790 -3.3786 43 1 0.3439 -1.0096 -4.3793 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000742360758.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:48 Heat of formation + Delta-G solvation = -56.773458 kcal Electronic energy + Delta-G solvation = -26243.559192 eV Core-core repulsion = 22395.291374 eV Total energy + Delta-G solvation = -3848.267818 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.84292 -41.21691 -39.98161 -37.95092 -36.79147 -35.80808 -34.59863 -32.76705 -32.04263 -31.19147 -29.55188 -27.46462 -25.92690 -24.59676 -23.94986 -23.34033 -21.77016 -19.55734 -19.12539 -18.58087 -18.48032 -18.06602 -17.26935 -17.05955 -16.53476 -16.34556 -16.13119 -15.95133 -15.68446 -15.17516 -14.93281 -14.80820 -14.56510 -14.38320 -14.26089 -14.05089 -13.74733 -13.71777 -13.54184 -13.32163 -13.01849 -12.97056 -12.83402 -12.69173 -12.36417 -12.30202 -12.04540 -11.97198 -11.86970 -11.78750 -11.69715 -11.56101 -10.74065 -10.50206 -9.97844 -9.45450 -9.41807 -8.23216 -6.30162 0.20556 0.35037 1.46616 1.47718 1.56261 1.63463 1.80027 1.84053 2.28795 2.40878 2.68399 3.12184 3.19405 3.35727 3.63075 3.82958 4.00451 4.05708 4.08753 4.12376 4.19699 4.29173 4.42098 4.46076 4.56793 4.62699 4.78267 4.86659 4.91864 4.93676 4.98364 5.02141 5.07091 5.10852 5.19010 5.23026 5.30044 5.37145 5.39824 5.56132 5.70002 5.73922 6.00550 6.23490 6.56653 6.67482 6.78233 7.30523 7.41554 8.93167 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.010483 B = 0.004176 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.466183 B = 6703.581328 C = 8544.954758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.105 4.105 3 H 0.086 0.914 4 C -0.052 4.052 5 C -0.087 4.087 6 C -0.080 4.080 7 C -0.150 4.150 8 C 0.071 3.929 9 F -0.151 7.151 10 C -0.159 4.159 11 C -0.098 4.098 12 C 0.523 3.477 13 O -0.582 6.582 14 N -0.591 5.591 15 C 0.209 3.791 16 C -0.539 4.539 17 H 0.028 0.972 18 C 0.017 3.983 19 N -0.947 5.947 20 Si 0.932 3.068 21 H -0.263 1.263 22 H -0.295 1.295 23 H -0.223 1.223 24 C 0.121 3.879 25 C -0.029 4.029 26 C 0.243 3.757 27 N -0.493 5.493 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.092 0.908 33 H 0.160 0.840 34 H 0.156 0.844 35 H 0.140 0.860 36 H 0.129 0.871 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.265 0.735 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.125 0.875 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.085 -7.483 11.134 18.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.126 4.126 3 H 0.105 0.895 4 C -0.090 4.090 5 C -0.087 4.087 6 C -0.098 4.098 7 C -0.168 4.168 8 C 0.052 3.948 9 F -0.130 7.130 10 C -0.178 4.178 11 C -0.117 4.117 12 C 0.313 3.687 13 O -0.464 6.464 14 N -0.321 5.321 15 C 0.088 3.912 16 C -0.578 4.578 17 H 0.046 0.954 18 C -0.181 4.181 19 N -0.587 5.587 20 Si 0.754 3.246 21 H -0.188 1.188 22 H -0.222 1.222 23 H -0.145 1.145 24 C -0.004 4.004 25 C -0.069 4.069 26 C -0.074 4.074 27 N -0.171 5.171 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.110 0.890 33 H 0.178 0.822 34 H 0.174 0.826 35 H 0.157 0.843 36 H 0.147 0.853 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.102 0.898 41 H 0.086 0.914 42 H 0.142 0.858 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.350 -8.692 9.791 17.327 hybrid contribution 0.338 1.503 0.319 1.574 sum -11.012 -7.189 10.110 16.587 Atomic orbital electron populations 1.21911 0.90702 1.03800 1.03570 1.21258 0.99479 1.00494 0.91405 0.89541 1.20318 1.01050 0.98384 0.89205 1.19995 0.95144 0.96804 0.96785 1.21201 0.95530 0.99293 0.93753 1.21383 1.00960 0.96191 0.98309 1.17967 0.95806 0.94865 0.86180 1.91460 1.91979 1.77808 1.51748 1.21270 0.96474 1.02427 0.97650 1.21112 1.00398 0.95065 0.95078 1.20893 0.77221 0.85487 0.85122 1.90611 1.47579 1.21517 1.86667 1.47843 1.64208 1.14270 1.05745 1.19879 0.94261 0.77430 0.99669 1.21600 0.93592 0.91536 1.51042 0.95395 1.25797 1.01233 0.97190 0.93922 1.70071 1.33129 1.03813 1.51696 0.85948 0.80186 0.78864 0.79558 1.18770 1.22175 1.14522 1.21151 0.96081 0.95534 0.87610 1.19733 1.00343 0.98552 0.88314 1.29318 0.91918 0.92245 0.93888 1.81220 1.10237 1.12014 1.13618 0.91378 0.90223 0.90498 0.92089 0.88963 0.82236 0.82600 0.84257 0.85259 0.92720 0.91988 0.92598 0.89809 0.91397 0.85757 0.84253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.09 71.98 0.58 -2.26 16 2 C -0.11 -2.84 1.85 -11.54 -0.02 -2.86 16 3 H 0.09 2.80 7.25 -2.38 -0.02 2.78 16 4 C -0.05 -1.25 4.16 29.85 0.12 -1.13 16 5 C -0.09 -1.92 4.72 -19.86 -0.09 -2.01 16 6 C -0.08 -1.41 8.15 22.26 0.18 -1.22 16 7 C -0.15 -2.73 10.03 22.31 0.22 -2.51 16 8 C 0.07 1.59 7.30 22.38 0.16 1.76 16 9 F -0.15 -3.62 17.27 44.97 0.78 -2.84 16 10 C -0.16 -3.70 10.03 22.31 0.22 -3.47 16 11 C -0.10 -2.37 9.70 22.26 0.22 -2.15 16 12 C 0.52 16.70 6.85 87.66 0.60 17.30 16 13 O -0.58 -20.77 15.72 -3.02 -0.05 -20.82 16 14 N -0.59 -18.99 2.47 -826.15 -2.04 -21.03 16 15 C 0.21 7.42 3.62 85.63 0.31 7.73 16 16 C -0.54 -26.17 9.93 25.60 0.25 -25.91 16 17 H 0.03 1.60 8.06 -2.91 -0.02 1.58 16 18 C 0.02 0.86 5.47 84.66 0.46 1.32 16 19 N -0.95 -54.35 13.96 21.45 0.30 -54.05 16 20 Si 0.93 36.58 27.47 68.60 1.88 38.46 16 21 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 22 H -0.30 -12.16 7.11 99.48 0.71 -11.46 16 23 H -0.22 -7.28 6.54 99.48 0.65 -6.63 16 24 C 0.12 3.46 5.37 86.38 0.46 3.93 16 25 C -0.03 -0.58 5.99 28.79 0.17 -0.40 16 26 C 0.24 6.15 15.43 89.44 1.38 7.53 16 27 N -0.49 -15.36 18.54 20.01 0.37 -14.99 16 28 H 0.07 1.35 6.32 -2.39 -0.02 1.34 16 29 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.08 1.39 6.75 -2.39 -0.02 1.38 16 31 H 0.06 1.68 8.08 -2.39 -0.02 1.66 16 32 H 0.09 2.01 8.03 -2.39 -0.02 1.99 16 33 H 0.16 1.91 8.04 -2.91 -0.02 1.89 16 34 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 35 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 36 H 0.13 3.15 8.06 -2.91 -0.02 3.13 16 37 H 0.05 1.77 7.17 -2.39 -0.02 1.75 16 38 H 0.06 2.01 4.01 -2.39 -0.01 2.00 16 39 H 0.27 14.37 8.31 -92.70 -0.77 13.60 16 40 H 0.08 2.52 8.03 -2.38 -0.02 2.50 16 41 H 0.07 2.13 7.53 -2.39 -0.02 2.11 16 42 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.14 2.09 8.14 -2.38 -0.02 2.07 16 Total: -1.00 -66.22 369.04 7.46 -58.76 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: 0.97 Total: 20.87 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: 5.24 Total: -4.36 kcal Atomic # 7 Polarization: -88.70 SS G_CDS: -1.37 Total: -90.07 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.05 Total: -20.82 kcal Atomic # 9 Polarization: -3.62 SS G_CDS: 0.78 Total: -2.84 kcal Atomic # 14 Polarization: 36.58 SS G_CDS: 1.88 Total: 38.46 kcal Total: -66.22 7.46 -58.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742360758.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.989 kcal (2) G-P(sol) polarization free energy of solvation -66.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds