Wall clock time and date at job start Tue Mar 31 2020 14:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.47420 * 2 1 4 4 C 1.50695 * 109.47415 * 119.99735 * 2 1 3 5 5 H 1.08005 * 119.99984 * 119.99812 * 4 2 1 6 6 C 1.37883 * 120.00498 * 300.00598 * 4 2 1 7 7 N 1.31520 * 119.99408 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00477 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47330 * 59.99467 * 8 6 4 10 10 H 1.48499 * 109.47273 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46950 * 299.99757 * 8 6 4 12 12 N 1.46899 * 109.47152 * 240.00123 * 2 1 3 13 13 C 1.46895 * 110.99953 * 306.04335 * 12 2 1 14 14 C 1.46902 * 111.00111 * 70.00049 * 12 2 1 15 15 C 1.50700 * 109.47195 * 170.00082 * 14 12 2 16 16 O 1.21293 * 119.99972 * 359.97438 * 15 14 12 17 17 N 1.34777 * 119.99806 * 179.97438 * 15 14 12 18 18 C 1.40088 * 119.99615 * 174.72368 * 17 15 14 19 19 C 1.39274 * 119.85926 * 146.68826 * 18 17 15 20 20 C 1.36600 * 120.57939 * 180.02562 * 19 18 17 21 21 C 1.39714 * 119.98518 * 359.97438 * 20 19 18 22 22 N 1.36014 * 133.37808 * 179.97438 * 21 20 19 23 23 C 1.30705 * 109.62719 * 180.02562 * 22 21 20 24 24 O 1.35309 * 125.03198 * 180.02562 * 23 22 21 25 25 N 1.36462 * 109.93870 * 0.02562 * 23 22 21 26 26 H 0.97001 * 126.36473 * 180.02562 * 25 23 22 27 27 C 1.38430 * 107.26767 * 359.97438 * 25 23 22 28 28 C 1.38542 * 119.86531 * 326.42139 * 18 17 15 29 29 H 1.09002 * 109.46684 * 300.00198 * 1 2 3 30 30 H 1.08995 * 109.47026 * 59.99618 * 1 2 3 31 31 H 1.08996 * 109.46958 * 180.02562 * 1 2 3 32 32 H 0.96994 * 119.99876 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.47503 * 183.95656 * 13 12 2 34 34 H 1.08999 * 109.47668 * 303.95811 * 13 12 2 35 35 H 1.09000 * 109.47091 * 63.95185 * 13 12 2 36 36 H 1.08995 * 109.47043 * 49.99993 * 14 12 2 37 37 H 1.08998 * 109.46593 * 290.00318 * 14 12 2 38 38 H 0.96990 * 120.00341 * 354.72793 * 17 15 14 39 39 H 1.07998 * 119.71067 * 0.02562 * 19 18 17 40 40 H 1.07997 * 120.01085 * 180.02562 * 20 19 18 41 41 H 0.96695 * 114.00316 * 90.02594 * 24 23 22 42 42 H 1.08000 * 120.17098 * 359.97438 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3215 -1.1202 4.0080 9 1 3.8065 -1.1208 4.0082 10 1 1.8270 -0.4199 5.2205 11 1 1.8260 -2.5202 4.0078 12 7 2.0197 -0.6925 -1.1994 13 6 1.4344 -2.0354 -1.3078 14 6 1.7530 0.0973 -2.4091 15 6 2.4774 -0.5162 -3.5794 16 8 3.1502 -1.5130 -3.4214 17 7 2.3778 0.0427 -4.8018 18 6 3.1373 -0.4604 -5.8660 19 6 2.6203 -0.4364 -7.1590 20 6 3.3479 -0.9236 -8.2075 21 6 4.6227 -1.4513 -7.9873 22 7 5.5623 -1.9961 -8.8060 23 6 6.6072 -2.3463 -8.1031 24 8 7.7251 -2.9193 -8.6060 25 7 6.4038 -2.0485 -6.7870 26 1 7.0246 -2.2071 -6.0588 27 6 5.1472 -1.4769 -6.6845 28 6 4.4016 -0.9746 -5.6287 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 0.7094 1.1618 3.4844 33 1 1.8665 -2.5521 -2.1648 34 1 1.6466 -2.5987 -0.3991 35 1 0.3556 -1.9520 -1.4398 36 1 2.1025 1.1189 -2.2604 37 1 0.6814 0.1053 -2.6087 38 1 1.7803 0.7933 -4.9446 39 1 1.6356 -0.0291 -7.3343 40 1 2.9383 -0.9000 -9.2065 41 1 8.4033 -2.2861 -8.8782 42 1 4.8027 -0.9881 -4.6260 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759375874.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:21 Heat of formation + Delta-G solvation = 23.896095 kcal Electronic energy + Delta-G solvation = -25862.662088 eV Core-core repulsion = 22037.812326 eV Total energy + Delta-G solvation = -3824.849762 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.32705 -40.21276 -38.35833 -37.23116 -36.34405 -34.15384 -33.19669 -32.72023 -30.16669 -29.50084 -28.39383 -27.05529 -25.25500 -24.24484 -23.39231 -22.40615 -21.81787 -20.54358 -19.45413 -19.11444 -18.28870 -17.61246 -16.95026 -16.46443 -16.03259 -15.60756 -15.36187 -14.96677 -14.59702 -14.24376 -14.20949 -14.04168 -13.96993 -13.43157 -13.18155 -12.70261 -12.58504 -12.28816 -12.17985 -11.83724 -11.61988 -11.09272 -11.06666 -10.97225 -10.83720 -10.73603 -10.53891 -10.32548 -10.10878 -10.02521 -9.91098 -9.38003 -8.93110 -8.59159 -8.40929 -7.82210 -7.22120 -6.04166 -4.07107 0.67733 1.26480 2.10827 2.35553 2.83785 3.02519 3.32366 3.36058 3.40125 3.52565 3.69305 4.31501 4.40126 4.81252 4.86597 5.02669 5.06955 5.09045 5.24534 5.28118 5.28976 5.67615 5.74353 5.79071 5.97663 6.05786 6.19195 6.28602 6.34052 6.38320 6.47273 6.62976 6.75339 6.77910 6.94522 7.03240 7.28809 7.32559 7.44146 7.51493 7.65511 7.80539 8.04350 8.28346 8.33366 8.52755 8.98822 9.57820 11.03166 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.023538 B = 0.002506 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.288214 B =11170.080981 C =12068.536427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.211 3.789 3 H 0.039 0.961 4 C -0.497 4.497 5 H 0.063 0.937 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.517 5.517 13 C 0.029 3.971 14 C 0.038 3.962 15 C 0.513 3.487 16 O -0.497 6.497 17 N -0.680 5.680 18 C 0.176 3.824 19 C -0.144 4.144 20 C -0.046 4.046 21 C 0.036 3.964 22 N -0.483 5.483 23 C 0.443 3.557 24 O -0.443 6.443 25 N -0.600 5.600 26 H 0.424 0.576 27 C 0.081 3.919 28 C -0.117 4.117 29 H 0.090 0.910 30 H 0.006 0.994 31 H 0.033 0.967 32 H 0.261 0.739 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.012 0.988 36 H 0.101 0.899 37 H 0.058 0.942 38 H 0.412 0.588 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.408 0.592 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.190 0.586 -21.053 21.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.106 3.894 3 H 0.057 0.943 4 C -0.536 4.536 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.536 5.536 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.203 1.203 12 N -0.241 5.241 13 C -0.119 4.119 14 C -0.094 4.094 15 C 0.301 3.699 16 O -0.369 6.369 17 N -0.327 5.327 18 C 0.079 3.921 19 C -0.166 4.166 20 C -0.066 4.066 21 C -0.082 4.082 22 N -0.215 5.215 23 C 0.139 3.861 24 O -0.245 6.245 25 N -0.224 5.224 26 H 0.264 0.736 27 C -0.029 4.029 28 C -0.141 4.141 29 H 0.108 0.892 30 H 0.025 0.975 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.030 0.970 36 H 0.119 0.881 37 H 0.076 0.924 38 H 0.248 0.752 39 H 0.153 0.847 40 H 0.153 0.847 41 H 0.266 0.734 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.771 -0.727 -21.495 22.548 hybrid contribution -0.068 0.383 1.849 1.889 sum 6.704 -0.344 -19.646 20.761 Atomic orbital electron populations 1.22434 1.00691 0.99642 1.00522 1.19375 0.89825 0.94458 0.85778 0.94271 1.21049 1.30557 1.12565 0.89440 0.91871 1.24916 0.95224 0.95157 0.98993 1.69865 1.37092 1.23053 1.23566 0.86554 0.79254 0.79620 0.81947 1.20224 1.21408 1.20339 1.62123 1.59136 1.02368 1.00484 1.22377 0.95463 0.91445 1.02593 1.21945 0.97880 0.99144 0.90456 1.21350 0.81520 0.83811 0.83183 1.90669 1.38991 1.23769 1.83440 1.43766 1.44651 1.35943 1.08365 1.17286 0.89585 0.97758 0.87428 1.20455 1.00646 1.04621 0.90850 1.19753 0.90562 0.96839 0.99411 1.18771 0.96101 1.04771 0.88596 1.70619 1.00965 1.18587 1.31300 1.20276 0.89723 0.96432 0.79686 1.84851 1.24890 1.34022 1.80700 1.43391 1.16332 1.52747 1.09971 0.73632 1.18347 0.86604 1.01094 0.96822 1.19840 0.92577 1.03595 0.98115 0.89165 0.97533 0.94791 0.92935 0.92077 0.90812 0.96955 0.88133 0.92443 0.75193 0.84674 0.84699 0.73388 0.84084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.98 8.22 37.16 0.31 -3.68 16 2 C 0.21 5.11 2.31 -68.87 -0.16 4.95 16 3 H 0.04 1.02 7.93 -51.93 -0.41 0.61 16 4 C -0.50 -13.45 7.91 -34.44 -0.27 -13.72 16 5 H 0.06 1.74 7.12 -52.48 -0.37 1.37 16 6 C 0.06 1.57 5.30 -17.82 -0.09 1.48 16 7 N -0.90 -24.89 11.32 55.43 0.63 -24.27 16 8 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.52 -10.94 4.44 -237.74 -1.06 -11.99 16 13 C 0.03 0.60 8.34 60.06 0.50 1.10 16 14 C 0.04 0.61 5.02 -4.97 -0.02 0.59 16 15 C 0.51 7.83 7.29 -10.99 -0.08 7.75 16 16 O -0.50 -9.32 12.01 5.55 0.07 -9.25 16 17 N -0.68 -7.63 5.34 -9.80 -0.05 -7.68 16 18 C 0.18 2.09 6.28 -83.59 -0.52 1.56 16 19 C -0.14 -1.39 9.88 -39.79 -0.39 -1.78 16 20 C -0.05 -0.48 10.04 -39.62 -0.40 -0.88 16 21 C 0.04 0.46 7.22 -84.62 -0.61 -0.16 16 22 N -0.48 -6.31 11.31 -12.19 -0.14 -6.45 16 23 C 0.44 4.77 9.39 -88.89 -0.84 3.93 16 24 O -0.44 -3.37 13.63 -17.62 -0.24 -3.61 16 25 N -0.60 -6.15 6.27 -11.90 -0.07 -6.23 16 26 H 0.42 3.21 8.96 -40.82 -0.37 2.84 16 27 C 0.08 1.02 7.30 -83.89 -0.61 0.41 16 28 C -0.12 -1.55 8.67 -39.31 -0.34 -1.90 16 29 H 0.09 2.31 6.07 -51.93 -0.32 1.99 16 30 H 0.01 0.12 6.91 -51.93 -0.36 -0.24 16 31 H 0.03 0.77 6.42 -51.93 -0.33 0.43 16 32 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 33 H 0.06 1.22 5.88 -51.93 -0.31 0.91 16 34 H 0.07 1.62 6.76 -51.93 -0.35 1.27 16 35 H 0.01 0.24 6.46 -51.93 -0.34 -0.10 16 36 H 0.10 1.50 7.93 -51.93 -0.41 1.09 16 37 H 0.06 0.86 7.06 -51.93 -0.37 0.49 16 38 H 0.41 3.14 8.82 -40.82 -0.36 2.78 16 39 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 40 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 41 H 0.41 0.77 9.06 45.56 0.41 1.18 16 42 H 0.14 2.09 6.42 -52.49 -0.34 1.75 16 LS Contribution 344.56 15.07 5.19 5.19 Total: -1.00 -34.40 344.56 -8.43 -42.83 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -4.19 Total: 5.59 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -3.54 Total: -0.33 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: -0.69 Total: -56.62 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: -0.17 Total: -12.87 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.40 -8.43 -42.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759375874.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.725 kcal (2) G-P(sol) polarization free energy of solvation -34.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds