Wall clock time and date at job start Tue Mar 31 2020 14:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47375 * 2 1 4 4 C 1.50703 * 109.47346 * 239.99914 * 2 1 3 5 5 N 1.28007 * 119.99953 * 119.99726 * 4 2 1 6 6 N 1.40101 * 120.00006 * 180.02562 * 5 4 2 7 7 C 1.34775 * 120.00122 * 179.97438 * 6 5 4 8 8 O 1.21293 * 119.99845 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00069 * 179.97438 * 7 6 5 10 10 N 1.46499 * 109.47138 * 180.02562 * 9 7 6 11 11 C 1.34777 * 119.99665 * 180.28062 * 10 9 7 12 12 O 1.21553 * 120.00289 * 359.72074 * 11 10 9 13 13 C 1.47841 * 119.99890 * 179.72373 * 11 10 9 14 14 C 1.40022 * 120.56277 * 179.72058 * 13 11 10 15 15 C 1.38354 * 118.28856 * 179.73560 * 14 13 11 16 16 C 1.38347 * 119.30607 * 0.55971 * 15 14 13 17 17 N 1.31934 * 121.07777 * 359.70164 * 16 15 14 18 18 C 1.31691 * 121.87654 * 359.97438 * 17 16 15 19 19 C 1.53004 * 109.47449 * 119.99792 * 2 1 3 20 20 C 1.50701 * 109.47241 * 295.00376 * 19 2 1 21 21 H 1.08002 * 119.99735 * 359.97438 * 20 19 2 22 22 C 1.37871 * 119.99935 * 180.02562 * 20 19 2 23 23 N 1.31509 * 120.00287 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99811 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.47082 * 89.99798 * 24 22 20 26 26 H 1.48497 * 109.47214 * 209.99813 * 24 22 20 27 27 H 1.48498 * 109.47313 * 330.00078 * 24 22 20 28 28 H 1.08998 * 109.47059 * 299.99618 * 1 2 3 29 29 H 1.08987 * 109.47423 * 60.00325 * 1 2 3 30 30 H 1.09007 * 109.46829 * 180.02562 * 1 2 3 31 31 H 1.08002 * 119.99514 * 300.00355 * 4 2 1 32 32 H 0.97002 * 119.99828 * 0.02562 * 6 5 4 33 33 H 1.09009 * 109.46601 * 60.00324 * 9 7 6 34 34 H 1.08998 * 109.47035 * 300.00831 * 9 7 6 35 35 H 0.97001 * 119.99790 * 359.97438 * 10 9 7 36 36 H 1.08004 * 120.84891 * 359.97438 * 14 13 11 37 37 H 1.07996 * 120.34662 * 180.25955 * 15 14 13 38 38 H 1.07998 * 119.46561 * 179.71812 * 16 15 14 39 39 H 1.08003 * 119.71198 * 180.02562 * 18 17 16 40 40 H 1.09001 * 109.47166 * 54.99997 * 19 2 1 41 41 H 1.08996 * 109.47049 * 174.99735 * 19 2 1 42 42 H 0.97004 * 120.00310 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 7 2.7683 -0.0883 -2.0731 6 7 3.2349 -0.7486 -3.2172 7 6 4.0093 -0.0935 -4.1047 8 8 4.3026 1.0677 -3.9125 9 6 4.5117 -0.8039 -5.3351 10 7 5.3255 0.1169 -6.1326 11 6 5.8787 -0.3009 -7.2884 12 8 5.7065 -1.4432 -7.6666 13 6 6.6949 0.6301 -8.0963 14 6 7.2799 0.2068 -9.2960 15 6 8.0298 1.1187 -10.0173 16 6 8.1861 2.4037 -9.5292 17 7 7.6275 2.7731 -8.3925 18 6 6.8998 1.9439 -7.6735 19 6 2.0401 -0.7212 1.2493 20 6 1.6414 0.0571 2.4766 21 1 1.0806 0.9746 2.3757 22 6 1.9934 -0.4017 3.7283 23 7 2.6766 -1.5186 3.8511 24 14 1.4997 0.5635 5.2496 25 1 0.1726 0.0953 5.7238 26 1 2.5094 0.3537 6.3181 27 1 1.4246 2.0086 4.9163 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.7714 -1.7444 -1.4013 32 1 3.0000 -1.6771 -3.3711 33 1 3.6638 -1.1468 -5.9282 34 1 5.1175 -1.6600 -5.0384 35 1 5.4626 1.0286 -5.8309 36 1 7.1458 -0.8043 -9.6510 37 1 8.4923 0.8290 -10.9492 38 1 8.7748 3.1163 -10.0879 39 1 6.4583 2.2835 -6.7481 40 1 1.6055 -1.7198 1.2953 41 1 3.1263 -0.7994 1.2055 42 1 2.9239 -1.8415 4.7318 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766025818.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:17 Heat of formation + Delta-G solvation = -2.616060 kcal Electronic energy + Delta-G solvation = -24206.770712 eV Core-core repulsion = 20380.771297 eV Total energy + Delta-G solvation = -3825.999415 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.10728 -40.01639 -39.06970 -37.14584 -35.06924 -34.77934 -33.03268 -32.59987 -32.12320 -31.04400 -28.16259 -27.01048 -24.90612 -24.20607 -23.88992 -22.05665 -21.14729 -20.87458 -19.45719 -18.73230 -17.62576 -17.45517 -16.87756 -16.54383 -16.30104 -16.15957 -15.67900 -15.36716 -15.14734 -14.56360 -14.28949 -14.17534 -13.68913 -13.52937 -13.40204 -13.23169 -13.18905 -12.71550 -12.68940 -12.00478 -11.64371 -11.22943 -10.92947 -10.84409 -10.77469 -10.48579 -10.45164 -10.31868 -10.08544 -9.94061 -9.82422 -9.78494 -9.61170 -9.57375 -9.13787 -8.64629 -8.40627 -6.05473 -4.07597 0.12525 0.69628 1.93460 2.15480 2.37589 2.81244 2.85902 3.30163 3.35972 3.37208 3.40661 3.78090 4.16539 4.22418 4.30289 4.38310 4.42781 4.49378 4.84673 4.88353 4.92114 5.07134 5.09687 5.21603 5.31412 5.49048 5.55120 5.73950 5.89065 5.98706 6.02334 6.07948 6.37746 6.72341 6.88217 6.90834 6.95347 7.03295 7.34351 7.47855 7.56238 7.65609 7.68477 7.92248 8.32013 8.42548 8.97531 9.56579 11.05905 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.026833 B = 0.001728 C = 0.001687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.235593 B =16200.638380 C =16591.635091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.043 4.043 3 H 0.081 0.919 4 C 0.115 3.885 5 N -0.259 5.259 6 N -0.587 5.587 7 C 0.525 3.475 8 O -0.508 6.508 9 C 0.106 3.894 10 N -0.711 5.711 11 C 0.569 3.431 12 O -0.534 6.534 13 C -0.188 4.188 14 C -0.015 4.015 15 C -0.181 4.181 16 C 0.123 3.877 17 N -0.486 5.486 18 C 0.139 3.861 19 C 0.033 3.967 20 C -0.517 4.517 21 H 0.060 0.940 22 C 0.057 3.943 23 N -0.895 5.895 24 Si 0.893 3.107 25 H -0.280 1.280 26 H -0.287 1.287 27 H -0.273 1.273 28 H 0.075 0.925 29 H 0.035 0.965 30 H 0.050 0.950 31 H 0.104 0.896 32 H 0.382 0.618 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.413 0.587 36 H 0.149 0.851 37 H 0.144 0.856 38 H 0.163 0.837 39 H 0.162 0.838 40 H 0.021 0.979 41 H 0.019 0.981 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.710 0.972 -27.244 28.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.064 4.064 3 H 0.099 0.901 4 C -0.099 4.099 5 N -0.061 5.061 6 N -0.328 5.328 7 C 0.311 3.689 8 O -0.380 6.380 9 C -0.023 4.023 10 N -0.367 5.367 11 C 0.356 3.644 12 O -0.412 6.412 13 C -0.193 4.193 14 C -0.041 4.041 15 C -0.201 4.201 16 C -0.034 4.034 17 N -0.194 5.194 18 C -0.020 4.020 19 C -0.005 4.005 20 C -0.555 4.555 21 H 0.078 0.922 22 C -0.144 4.144 23 N -0.534 5.534 24 Si 0.721 3.279 25 H -0.207 1.207 26 H -0.213 1.213 27 H -0.198 1.198 28 H 0.093 0.907 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.121 0.879 32 H 0.220 0.780 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.253 0.747 36 H 0.167 0.833 37 H 0.162 0.838 38 H 0.180 0.820 39 H 0.179 0.821 40 H 0.040 0.960 41 H 0.037 0.963 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.504 2.547 -27.294 28.421 hybrid contribution -0.677 -1.491 0.767 1.808 sum 6.827 1.057 -26.527 27.412 Atomic orbital electron populations 1.21673 0.94203 1.01492 1.01246 1.20427 0.95582 1.00231 0.90148 0.90094 1.26840 0.91109 0.97901 0.94092 1.74675 1.12602 1.23921 0.94865 1.46930 1.51146 1.13754 1.20957 1.20184 0.78096 0.87292 0.83354 1.90720 1.55628 1.16342 1.75343 1.21036 0.97324 0.93145 0.90789 1.45576 1.51886 1.16770 1.22472 1.17970 0.79117 0.87060 0.80283 1.90799 1.60817 1.18967 1.70594 1.20902 1.03835 0.96119 0.98474 1.21758 0.90656 1.00483 0.91240 1.22203 1.01058 0.94809 1.01999 1.23098 0.94127 0.94684 0.91445 1.67763 1.08492 1.36632 1.06534 1.23124 0.92250 0.88493 0.98098 1.19131 0.96526 0.95574 0.89245 1.21155 1.35228 1.08519 0.90607 0.92187 1.25002 0.95107 0.95089 0.99186 1.69953 1.38662 1.21200 1.23608 0.86578 0.78193 0.80466 0.82692 1.20658 1.21291 1.19785 0.90652 0.94554 0.93081 0.87905 0.77992 0.87676 0.87585 0.74703 0.83344 0.83796 0.82014 0.82059 0.96024 0.96299 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 8.99 37.16 0.33 -1.79 16 2 C -0.04 -0.81 2.75 -91.77 -0.25 -1.06 16 3 H 0.08 1.65 8.11 -51.93 -0.42 1.23 16 4 C 0.12 1.87 9.66 -13.87 -0.13 1.73 16 5 N -0.26 -4.42 10.92 32.67 0.36 -4.06 16 6 N -0.59 -7.61 6.25 31.22 0.20 -7.42 16 7 C 0.53 6.72 8.02 -10.98 -0.09 6.63 16 8 O -0.51 -8.44 16.00 5.55 0.09 -8.36 16 9 C 0.11 0.95 6.15 -5.19 -0.03 0.92 16 10 N -0.71 -6.75 5.48 -62.43 -0.34 -7.09 16 11 C 0.57 5.80 7.78 -12.33 -0.10 5.71 16 12 O -0.53 -6.77 16.42 5.32 0.09 -6.68 16 13 C -0.19 -1.64 5.89 -104.82 -0.62 -2.26 16 14 C -0.01 -0.11 9.72 -38.87 -0.38 -0.49 16 15 C -0.18 -0.98 10.10 -39.50 -0.40 -1.38 16 16 C 0.12 0.78 11.17 -17.47 -0.20 0.58 16 17 N -0.49 -4.35 10.35 -12.91 -0.13 -4.48 16 18 C 0.14 1.18 10.71 -17.13 -0.18 1.00 16 19 C 0.03 0.80 4.43 -27.88 -0.12 0.67 16 20 C -0.52 -13.71 8.41 -34.44 -0.29 -14.00 16 21 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 22 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 23 N -0.90 -25.92 13.29 55.43 0.74 -25.18 16 24 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 28 H 0.07 1.34 6.95 -51.93 -0.36 0.98 16 29 H 0.04 0.53 8.14 -51.94 -0.42 0.10 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.10 1.37 8.00 -52.49 -0.42 0.95 16 32 H 0.38 3.47 8.63 -182.59 -1.58 1.90 16 33 H 0.11 0.78 8.14 -51.92 -0.42 0.36 16 34 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.41 3.81 5.50 -40.82 -0.22 3.58 16 36 H 0.15 0.97 7.74 -52.48 -0.41 0.57 16 37 H 0.14 0.35 8.06 -52.49 -0.42 -0.07 16 38 H 0.16 0.54 8.06 -52.49 -0.42 0.12 16 39 H 0.16 1.15 6.42 -52.48 -0.34 0.82 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 370.49 15.07 5.58 5.58 Total: -1.00 -35.19 370.49 -7.63 -42.82 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -6.63 Total: 1.12 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -2.55 Total: -2.24 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: 0.81 Total: -48.24 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: 0.18 Total: -15.03 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.19 -7.63 -42.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766025818.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.205 kcal (2) G-P(sol) polarization free energy of solvation -35.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds