Wall clock time and date at job start Tue Mar 31 2020 14:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46491 * 109.47319 * 2 1 4 4 C 1.34818 * 125.88814 * 125.32808 * 3 2 1 5 5 C 1.36491 * 107.60574 * 180.12741 * 4 3 2 6 6 C 1.48368 * 126.23244 * 179.84029 * 5 4 3 7 7 N 1.31319 * 126.51713 * 324.91406 * 6 5 4 8 8 N 1.39770 * 109.11451 * 180.24277 * 7 6 5 9 9 C 1.46500 * 125.14947 * 179.69950 * 8 7 6 10 10 C 1.34059 * 109.70391 * 359.72420 * 8 7 6 11 11 C 1.38124 * 107.86750 * 0.02562 * 10 8 7 12 12 C 1.47090 * 126.82713 * 179.97438 * 11 10 8 13 13 O 1.21543 * 120.00173 * 180.02562 * 12 11 10 14 14 O 1.34784 * 119.99846 * 0.02562 * 12 11 10 15 15 C 1.45196 * 116.99831 * 179.97438 * 14 12 11 16 16 H 1.09004 * 109.47117 * 30.00391 * 15 14 12 17 17 C 1.53003 * 109.47355 * 269.99949 * 15 14 12 18 18 C 1.50701 * 109.47267 * 150.00205 * 15 14 12 19 19 H 1.08007 * 119.99691 * 0.02562 * 18 15 14 20 20 C 1.37876 * 120.00286 * 180.02562 * 18 15 14 21 21 N 1.31514 * 119.99938 * 0.02562 * 20 18 15 22 22 Si 1.86797 * 119.99943 * 179.97438 * 20 18 15 23 23 H 1.48497 * 109.47369 * 90.00274 * 22 20 18 24 24 H 1.48498 * 109.47365 * 210.00141 * 22 20 18 25 25 H 1.48502 * 109.47281 * 330.00101 * 22 20 18 26 26 C 1.40883 * 107.53794 * 359.57471 * 5 4 3 27 27 N 1.30665 * 108.09073 * 0.26563 * 26 5 4 28 28 H 1.09005 * 109.47143 * 300.00209 * 1 2 3 29 29 H 1.09003 * 109.47171 * 59.99306 * 1 2 3 30 30 H 1.08996 * 109.47325 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46821 * 240.00067 * 2 1 3 32 32 H 1.08998 * 109.46825 * 120.00374 * 2 1 3 33 33 H 1.07997 * 126.20325 * 0.02562 * 4 3 2 34 34 H 1.08997 * 109.47270 * 270.02829 * 9 8 7 35 35 H 1.09006 * 109.47035 * 30.02722 * 9 8 7 36 36 H 1.08991 * 109.47019 * 150.02360 * 9 8 7 37 37 H 1.08001 * 126.06764 * 179.97438 * 10 8 7 38 38 H 1.08997 * 109.46624 * 60.00263 * 17 15 14 39 39 H 1.09003 * 109.47126 * 179.97438 * 17 15 14 40 40 H 1.08999 * 109.46934 * 300.00127 * 17 15 14 41 41 H 0.96998 * 119.99531 * 179.97438 * 21 20 18 42 42 H 1.07996 * 125.95860 * 180.28644 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8773 1.9157 0.8911 5 6 3.0737 3.2209 0.5435 6 6 3.9426 4.1950 1.2487 7 7 4.1492 4.2634 2.5437 8 7 5.0254 5.3187 2.8123 9 6 5.4884 5.7120 4.1454 10 6 5.3775 5.9169 1.6654 11 6 4.7366 5.2621 0.6318 12 6 4.8282 5.5764 -0.8022 13 8 4.2065 4.9148 -1.6103 14 8 5.6015 6.5982 -1.2202 15 6 5.6446 6.8505 -2.6494 16 1 4.6965 6.5557 -3.0991 17 6 6.7806 6.0397 -3.2765 18 6 5.8813 8.3186 -2.8935 19 1 5.9891 8.9944 -2.0578 20 6 5.9604 8.7992 -4.1833 21 7 5.8286 7.9763 -5.2008 22 14 6.2531 10.6191 -4.4857 23 1 7.7129 10.8794 -4.5640 24 1 5.6100 11.0184 -5.7633 25 1 5.6689 11.4065 -3.3704 26 6 2.3059 3.4730 -0.6106 27 7 1.6790 2.3718 -0.9293 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.3271 1.4044 1.7293 34 1 4.8043 6.4498 4.5646 35 1 5.5188 4.8355 4.7927 36 1 6.4866 6.1432 4.0707 37 1 6.0434 6.7615 1.5671 38 1 6.6093 4.9778 -3.1000 39 1 6.8126 6.2288 -4.3495 40 1 7.7286 6.3345 -2.8267 41 1 5.8839 8.3145 -6.1082 42 1 2.2461 4.4125 -1.1397 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778639355.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:58 Heat of formation + Delta-G solvation = 67.847985 kcal Electronic energy + Delta-G solvation = -26184.024677 eV Core-core repulsion = 22361.080812 eV Total energy + Delta-G solvation = -3822.943865 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.23135 -40.58527 -38.86108 -35.48916 -34.59726 -33.30654 -33.15778 -30.78103 -30.16169 -29.46980 -29.19605 -26.57517 -25.24204 -24.01019 -23.23976 -21.72814 -21.25375 -20.35511 -19.47916 -19.02222 -17.51337 -16.81716 -16.34630 -16.02932 -15.61772 -15.46470 -15.09491 -14.63899 -14.59192 -14.27205 -14.11019 -13.64170 -13.17661 -13.04199 -12.96185 -12.69313 -12.47223 -12.27300 -12.24166 -11.96080 -11.69449 -11.56426 -11.15170 -11.02244 -10.85737 -10.70663 -10.53340 -10.28926 -10.21750 -9.74639 -9.52484 -9.39996 -9.16394 -8.80638 -8.60509 -8.41355 -7.93433 -6.11840 -4.18300 1.66216 1.72909 2.33470 2.35131 2.59152 3.28047 3.29414 3.33679 3.37405 3.89171 3.92214 4.34720 4.41074 4.46683 4.74276 4.79870 4.86263 4.94692 4.98718 4.99569 5.21148 5.22853 5.26210 5.35878 5.50611 5.64381 5.71281 5.77392 5.95120 6.08280 6.21267 6.53063 6.76714 6.89035 6.90247 7.00516 7.03642 7.05720 7.31360 7.66827 7.67964 7.83369 7.90953 8.05970 8.24117 8.78135 9.03953 9.47076 10.95558 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.012681 B = 0.003581 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.431049 B = 7816.831665 C = 9597.466737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.132 3.868 3 N -0.377 5.377 4 C 0.086 3.914 5 C -0.173 4.173 6 C 0.217 3.783 7 N -0.304 5.304 8 N -0.373 5.373 9 C 0.100 3.900 10 C 0.126 3.874 11 C -0.264 4.264 12 C 0.531 3.469 13 O -0.519 6.519 14 O -0.358 6.358 15 C 0.218 3.782 16 H 0.048 0.952 17 C -0.154 4.154 18 C -0.519 4.519 19 H 0.068 0.932 20 C 0.062 3.938 21 N -0.888 5.888 22 Si 0.910 3.090 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.272 1.272 26 C 0.118 3.882 27 N -0.302 5.302 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.175 0.825 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.193 0.807 38 H 0.016 0.984 39 H 0.097 0.903 40 H 0.034 0.966 41 H 0.265 0.735 42 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.844 -11.672 17.717 21.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.011 3.989 3 N -0.158 5.158 4 C -0.064 4.064 5 C -0.187 4.187 6 C 0.048 3.952 7 N -0.124 5.124 8 N -0.152 5.152 9 C -0.041 4.041 10 C -0.022 4.022 11 C -0.277 4.277 12 C 0.376 3.624 13 O -0.410 6.410 14 O -0.274 6.274 15 C 0.166 3.834 16 H 0.066 0.934 17 C -0.212 4.212 18 C -0.557 4.557 19 H 0.086 0.914 20 C -0.140 4.140 21 N -0.526 5.526 22 Si 0.737 3.263 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.070 4.070 27 N -0.122 5.122 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.192 0.808 34 H 0.095 0.905 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.210 0.790 38 H 0.035 0.965 39 H 0.116 0.884 40 H 0.053 0.947 41 H 0.075 0.925 42 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -5.080 -12.997 17.714 22.550 hybrid contribution 1.179 1.691 -0.436 2.107 sum -3.901 -11.306 17.278 21.013 Atomic orbital electron populations 1.22049 0.93840 1.02602 1.03763 1.21638 0.96043 0.77610 1.03594 1.48577 1.35354 1.10422 1.21403 1.22431 0.94377 0.94020 0.95526 1.17624 1.07668 0.92149 1.01235 1.20846 0.92996 0.92543 0.88782 1.77272 1.12454 1.07617 1.15060 1.48025 1.36078 1.24328 1.06774 1.21924 1.00302 1.01872 0.80006 1.23174 0.97147 0.97088 0.84814 1.20625 1.10651 1.04433 0.91986 1.19776 0.76855 0.78740 0.87037 1.90727 1.44528 1.50160 1.55611 1.86521 1.61330 1.46571 1.32998 1.20571 0.96657 0.95569 0.70615 0.93415 1.22151 0.98354 0.95948 1.04732 1.21028 1.50553 0.91424 0.92679 0.91430 1.24876 0.94931 0.98687 0.95513 1.69907 1.49262 1.34628 0.98830 0.86305 0.78341 0.83902 0.77741 1.20470 1.21032 1.19677 1.24293 0.91843 0.97708 0.93204 1.77332 1.24878 0.96840 1.13141 0.92127 0.90880 0.90907 0.89793 0.88898 0.80837 0.90512 0.89239 0.89106 0.78994 0.96460 0.88414 0.94654 0.92481 0.78656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 10.09 37.16 0.38 -0.94 16 2 C 0.13 1.15 7.22 -4.05 -0.03 1.12 16 3 N -0.38 -5.08 3.67 -61.09 -0.22 -5.30 16 4 C 0.09 1.16 11.40 -16.87 -0.19 0.97 16 5 C -0.17 -2.89 5.83 -105.36 -0.61 -3.50 16 6 C 0.22 3.70 7.27 -80.54 -0.59 3.11 16 7 N -0.30 -4.61 12.50 34.59 0.43 -4.18 16 8 N -0.37 -4.70 3.95 -67.63 -0.27 -4.97 16 9 C 0.10 0.70 11.39 59.85 0.68 1.38 16 10 C 0.13 1.79 11.28 -16.62 -0.19 1.60 16 11 C -0.26 -4.79 6.31 -102.97 -0.65 -5.44 16 12 C 0.53 11.73 7.92 34.32 0.27 12.00 16 13 O -0.52 -12.44 12.18 -19.30 -0.24 -12.68 16 14 O -0.36 -8.59 9.71 -40.72 -0.40 -8.99 16 15 C 0.22 5.91 2.56 -27.88 -0.07 5.84 16 16 H 0.05 1.42 7.16 -51.93 -0.37 1.05 16 17 C -0.15 -3.99 9.33 37.16 0.35 -3.64 16 18 C -0.52 -14.57 8.90 -34.44 -0.31 -14.88 16 19 H 0.07 1.85 7.81 -52.48 -0.41 1.44 16 20 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 21 N -0.89 -25.47 11.32 55.43 0.63 -24.84 16 22 Si 0.91 21.13 29.54 -169.99 -5.02 16.11 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 26 C 0.12 2.13 10.13 -17.05 -0.17 1.96 16 27 N -0.30 -5.16 12.38 30.81 0.38 -4.78 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.09 0.53 8.07 -51.93 -0.42 0.11 16 33 H 0.17 1.75 8.06 -52.49 -0.42 1.33 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.09 0.42 8.13 -51.93 -0.42 0.00 16 37 H 0.19 2.20 8.06 -52.49 -0.42 1.78 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.10 2.69 6.07 -51.93 -0.32 2.38 16 40 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 42 H 0.20 3.80 6.35 -52.49 -0.33 3.47 16 LS Contribution 364.65 15.07 5.50 5.50 Total: -1.00 -35.14 364.65 -6.07 -41.21 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -5.63 Total: 1.69 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -1.23 Total: 1.22 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: 0.95 Total: -44.06 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.63 Total: -21.66 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.14 -6.07 -41.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778639355.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.055 kcal (2) G-P(sol) polarization free energy of solvation -35.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds