Wall clock time and date at job start Tue Mar 31 2020 14:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42897 * 109.47171 * 2 1 4 4 C 1.35610 * 117.00248 * 179.97438 * 3 2 1 5 5 C 1.39047 * 119.55861 * 180.02562 * 4 3 2 6 6 C 1.38111 * 119.23805 * 179.74603 * 5 4 3 7 7 C 1.39951 * 118.37869 * 0.48898 * 6 5 4 8 8 C 1.48349 * 120.47145 * 179.75617 * 7 6 5 9 9 N 1.30794 * 126.41984 * 359.70104 * 8 7 6 10 10 O 1.21291 * 110.09143 * 180.02562 * 9 8 7 11 11 C 1.33669 * 110.03286 * 359.97438 * 10 9 8 12 12 C 1.50701 * 126.43280 * 179.97438 * 11 10 9 13 13 H 1.09002 * 109.47060 * 165.02894 * 12 11 10 14 14 N 1.46901 * 109.46921 * 45.02713 * 12 11 10 15 15 C 1.53002 * 109.47419 * 285.02975 * 12 11 10 16 16 C 1.52997 * 109.47469 * 184.99997 * 15 12 11 17 17 C 1.50699 * 109.47339 * 179.97438 * 16 15 12 18 18 H 1.07999 * 119.99742 * 359.97438 * 17 16 15 19 19 C 1.37874 * 119.99999 * 180.02562 * 17 16 15 20 20 N 1.31519 * 120.00224 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00088 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.46828 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47218 * 119.99677 * 21 19 17 24 24 H 1.48499 * 109.47069 * 239.99894 * 21 19 17 25 25 N 1.30967 * 107.13173 * 0.26820 * 11 10 9 26 26 C 1.39193 * 119.05297 * 359.48860 * 7 6 5 27 27 N 1.31785 * 120.66630 * 0.27123 * 26 7 6 28 28 H 1.08998 * 109.46430 * 60.00214 * 1 2 3 29 29 H 1.09000 * 109.46552 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46967 * 299.99840 * 1 2 3 31 31 H 1.09002 * 109.47373 * 239.99505 * 2 1 3 32 32 H 1.09005 * 109.46817 * 119.99674 * 2 1 3 33 33 H 1.07998 * 120.37824 * 359.97093 * 5 4 3 34 34 H 1.08002 * 120.81226 * 180.27137 * 6 5 4 35 35 H 1.00898 * 111.00245 * 299.99784 * 14 12 11 36 36 H 1.00904 * 111.00313 * 63.95601 * 14 12 11 37 37 H 1.09008 * 109.46873 * 305.00091 * 15 12 11 38 38 H 1.08997 * 109.47047 * 64.99780 * 15 12 11 39 39 H 1.08997 * 109.47151 * 300.00410 * 16 15 12 40 40 H 1.09006 * 109.46918 * 59.99351 * 16 15 12 41 41 H 0.96998 * 120.00384 * 179.97438 * 20 19 17 42 42 H 1.07998 * 119.66802 * 180.29447 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3508 1.5250 0.0005 5 6 3.8723 2.8139 0.0011 6 6 5.2425 2.9873 0.0070 7 6 6.0570 1.8492 0.0017 8 6 7.5345 1.9816 0.0022 9 7 8.2140 3.0991 0.0018 10 8 9.4038 2.8634 0.0020 11 6 9.6088 1.5425 0.0030 12 6 10.9443 0.8441 0.0029 13 1 10.8062 -0.2038 0.2693 14 7 11.8323 1.4854 0.9817 15 6 11.5689 0.9380 -1.3906 16 6 12.8640 0.1241 -1.4250 17 6 13.4789 0.2161 -2.7977 18 1 12.9942 0.7966 -3.5687 19 6 14.6597 -0.4417 -3.0697 20 7 15.2497 -1.1491 -2.1310 21 14 15.4223 -0.3271 -4.7711 22 1 14.5694 0.5237 -5.6395 23 1 16.7769 0.2722 -4.6671 24 1 15.5263 -1.6866 -5.3595 25 7 8.4313 0.9693 -0.0024 26 6 5.4609 0.5914 0.0016 27 7 4.1487 0.4694 0.0011 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.2134 3.6697 0.0006 34 1 5.6749 3.9770 0.0120 35 1 11.9761 2.4584 0.7565 36 1 11.4734 1.3804 1.9189 37 1 10.8713 0.5422 -2.1289 38 1 11.7887 1.9804 -1.6208 39 1 13.5615 0.5198 -0.6868 40 1 12.6442 -0.9184 -1.1947 41 1 16.0802 -1.6122 -2.3224 42 1 6.0799 -0.2935 0.0023 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822739509.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:31 Heat of formation + Delta-G solvation = 53.646724 kcal Electronic energy + Delta-G solvation = -24930.810036 eV Core-core repulsion = 21107.250358 eV Total energy + Delta-G solvation = -3823.559678 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.54389 -41.01598 -38.55256 -36.79133 -35.80512 -33.38160 -32.97593 -32.57106 -31.58149 -30.33710 -30.12957 -26.59774 -25.10204 -24.94705 -24.01024 -22.94963 -22.68808 -21.23210 -20.12247 -18.94994 -18.04500 -17.83430 -17.16683 -16.70568 -16.27335 -16.12212 -15.91538 -15.07306 -14.93602 -14.43951 -14.42548 -14.32231 -14.08866 -13.78099 -13.03871 -13.01348 -12.81282 -12.62401 -12.49718 -12.13591 -11.99138 -11.96510 -11.76646 -11.17908 -11.15440 -10.93410 -10.84217 -10.60573 -10.43893 -10.10719 -10.08541 -9.87580 -9.44381 -9.04700 -8.88227 -8.68718 -8.30071 -5.96866 -3.99010 0.32452 0.78463 1.25456 2.30605 2.55707 2.80073 3.31954 3.33003 3.40802 3.42510 3.44564 3.80222 3.91374 4.47882 4.48071 4.53891 4.59302 4.60230 4.68570 4.71692 4.91083 4.96962 5.23579 5.31108 5.36009 5.38765 5.39956 5.40179 5.54587 5.61937 5.71529 5.79580 5.88116 5.96050 6.36694 6.53348 6.79736 6.97265 7.12164 7.38144 7.47013 7.72817 7.89889 8.06914 8.08559 8.43798 9.08467 9.64518 11.14027 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.020963 B = 0.002102 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.337030 B =13320.318598 C =13959.786661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.064 3.936 3 O -0.304 6.304 4 C 0.336 3.664 5 C -0.192 4.192 6 C -0.007 4.007 7 C -0.108 4.108 8 C 0.215 3.785 9 N -0.384 5.384 10 O 0.078 5.922 11 C 0.170 3.830 12 C 0.185 3.815 13 H 0.127 0.873 14 N -0.812 5.812 15 C -0.102 4.102 16 C 0.031 3.969 17 C -0.523 4.523 18 H 0.053 0.947 19 C 0.058 3.942 20 N -0.891 5.891 21 Si 0.889 3.111 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.285 1.285 25 N -0.480 5.480 26 C 0.191 3.809 27 N -0.538 5.538 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.349 0.651 36 H 0.341 0.659 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.038 0.962 40 H 0.016 0.984 41 H 0.259 0.741 42 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.470 6.013 7.992 27.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.012 4.012 3 O -0.211 6.211 4 C 0.157 3.843 5 C -0.212 4.212 6 C -0.033 4.033 7 C -0.113 4.113 8 C -0.055 4.055 9 N -0.092 5.092 10 O 0.019 5.981 11 C -0.054 4.054 12 C 0.070 3.930 13 H 0.144 0.856 14 N -0.340 5.340 15 C -0.141 4.141 16 C -0.006 4.006 17 C -0.561 4.561 18 H 0.072 0.928 19 C -0.143 4.143 20 N -0.531 5.531 21 Si 0.717 3.283 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.211 1.211 25 N -0.213 5.213 26 C 0.033 3.967 27 N -0.261 5.261 28 H 0.084 0.916 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.167 0.833 34 H 0.167 0.833 35 H 0.164 0.836 36 H 0.153 0.847 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.056 0.944 40 H 0.035 0.965 41 H 0.069 0.931 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -26.018 5.200 7.784 27.651 hybrid contribution 0.190 1.200 -0.778 1.442 sum -25.828 6.400 7.006 27.516 Atomic orbital electron populations 1.21831 0.92834 1.03076 1.03332 1.22688 0.94862 0.80690 1.02919 1.86226 1.16621 1.31170 1.87084 1.20004 0.84206 0.90010 0.90112 1.20970 0.95158 0.96020 1.09068 1.21432 0.91953 0.98966 0.90995 1.18154 0.86814 0.95434 1.10860 1.23558 0.95832 0.84484 1.01661 1.74829 0.89500 1.23124 1.21740 1.85241 1.19686 1.27505 1.65629 1.31225 1.00018 0.80779 0.93346 1.20918 0.77351 0.97148 0.97629 0.85580 1.58809 1.48626 1.21890 1.04721 1.21858 1.00311 1.02291 0.89645 1.19029 0.89835 0.94420 0.97313 1.21276 1.07125 1.30500 0.97199 0.92848 1.24981 0.97102 0.95411 0.96794 1.69976 1.18286 1.32248 1.32558 0.86589 0.79207 0.77734 0.84763 1.19857 1.21032 1.21091 1.71999 0.98264 1.30000 1.21045 1.22608 0.88719 0.96596 0.88807 1.67474 1.05954 1.32685 1.20033 0.91593 0.90119 0.91628 0.91274 0.91318 0.83292 0.83277 0.83627 0.84650 0.92249 0.92349 0.94407 0.96526 0.93100 0.80810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 10.28 37.16 0.38 -0.42 16 2 C 0.06 0.49 6.02 37.16 0.22 0.71 16 3 O -0.30 -2.98 10.11 -18.53 -0.19 -3.17 16 4 C 0.34 3.61 7.49 -17.04 -0.13 3.48 16 5 C -0.19 -1.79 10.03 -39.33 -0.39 -2.18 16 6 C -0.01 -0.07 9.82 -38.99 -0.38 -0.45 16 7 C -0.11 -1.33 5.89 -104.74 -0.62 -1.95 16 8 C 0.22 3.11 7.81 -156.11 -1.22 1.89 16 9 N -0.38 -5.68 11.93 30.97 0.37 -5.31 16 10 O 0.08 1.14 11.27 18.04 0.20 1.35 16 11 C 0.17 2.50 7.29 -12.99 -0.09 2.40 16 12 C 0.18 2.79 3.29 -68.86 -0.23 2.57 16 13 H 0.13 1.91 8.14 -51.93 -0.42 1.49 16 14 N -0.81 -11.02 8.67 -5.65 -0.05 -11.07 16 15 C -0.10 -1.93 4.78 -26.73 -0.13 -2.06 16 16 C 0.03 0.76 4.86 -27.89 -0.14 0.62 16 17 C -0.52 -14.38 9.11 -34.44 -0.31 -14.70 16 18 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -26.30 13.29 55.43 0.74 -25.57 16 21 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 N -0.48 -7.27 11.27 -9.88 -0.11 -7.39 16 26 C 0.19 2.25 10.86 -17.22 -0.19 2.06 16 27 N -0.54 -6.24 9.19 -13.05 -0.12 -6.36 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 32 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 33 H 0.15 1.03 8.06 -52.49 -0.42 0.60 16 34 H 0.15 1.35 7.95 -52.49 -0.42 0.93 16 35 H 0.35 4.38 8.97 -39.29 -0.35 4.03 16 36 H 0.34 3.76 9.06 -39.29 -0.36 3.40 16 37 H 0.06 1.14 8.14 -51.92 -0.42 0.72 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.04 0.97 7.75 -51.93 -0.40 0.57 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.17 1.93 7.88 -52.49 -0.41 1.51 16 LS Contribution 368.50 15.07 5.55 5.55 Total: -1.00 -31.49 368.50 -7.65 -39.14 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -5.71 Total: 2.89 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -3.32 Total: -6.48 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: 0.83 Total: -55.70 kcal Atomic # 8 Polarization: -1.84 SS G_CDS: 0.02 Total: -1.82 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.49 -7.65 -39.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822739509.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.788 kcal (2) G-P(sol) polarization free energy of solvation -31.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds