Wall clock time and date at job start Tue Mar 31 2020 14:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42897 * 109.47171 * 2 1 4 4 C 1.35610 * 117.00248 * 179.97438 * 3 2 1 5 5 C 1.39047 * 119.55861 * 180.02562 * 4 3 2 6 6 C 1.38111 * 119.23805 * 179.74603 * 5 4 3 7 7 C 1.39951 * 118.37869 * 0.48898 * 6 5 4 8 8 C 1.48349 * 120.47145 * 179.75617 * 7 6 5 9 9 N 1.30794 * 126.41984 * 359.70104 * 8 7 6 10 10 O 1.21291 * 110.09143 * 180.02562 * 9 8 7 11 11 C 1.33669 * 110.03286 * 359.97438 * 10 9 8 12 12 C 1.50701 * 126.43280 * 179.97438 * 11 10 9 13 13 H 1.09002 * 109.47060 * 165.02894 * 12 11 10 14 14 N 1.46901 * 109.46921 * 45.02713 * 12 11 10 15 15 C 1.53002 * 109.47419 * 285.02975 * 12 11 10 16 16 C 1.52997 * 109.47469 * 184.99997 * 15 12 11 17 17 C 1.50699 * 109.47339 * 179.97438 * 16 15 12 18 18 H 1.07999 * 119.99742 * 359.97438 * 17 16 15 19 19 C 1.37874 * 119.99999 * 180.02562 * 17 16 15 20 20 N 1.31519 * 120.00224 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00088 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.46828 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47218 * 119.99677 * 21 19 17 24 24 H 1.48499 * 109.47069 * 239.99894 * 21 19 17 25 25 N 1.30967 * 107.13173 * 0.26820 * 11 10 9 26 26 C 1.39193 * 119.05297 * 359.48860 * 7 6 5 27 27 N 1.31785 * 120.66630 * 0.27123 * 26 7 6 28 28 H 1.08998 * 109.46430 * 60.00214 * 1 2 3 29 29 H 1.09000 * 109.46552 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46967 * 299.99840 * 1 2 3 31 31 H 1.09002 * 109.47373 * 239.99505 * 2 1 3 32 32 H 1.09005 * 109.46817 * 119.99674 * 2 1 3 33 33 H 1.07998 * 120.37824 * 359.97093 * 5 4 3 34 34 H 1.08002 * 120.81226 * 180.27137 * 6 5 4 35 35 H 1.00898 * 111.00245 * 299.99784 * 14 12 11 36 36 H 1.00904 * 111.00313 * 63.95601 * 14 12 11 37 37 H 1.09008 * 109.46873 * 305.00091 * 15 12 11 38 38 H 1.08997 * 109.47047 * 64.99780 * 15 12 11 39 39 H 1.08997 * 109.47151 * 300.00410 * 16 15 12 40 40 H 1.09006 * 109.46918 * 59.99351 * 16 15 12 41 41 H 0.96998 * 120.00384 * 179.97438 * 20 19 17 42 42 H 1.07998 * 119.66802 * 180.29447 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3508 1.5250 0.0005 5 6 3.8723 2.8139 0.0011 6 6 5.2425 2.9873 0.0070 7 6 6.0570 1.8492 0.0017 8 6 7.5345 1.9816 0.0022 9 7 8.2140 3.0991 0.0018 10 8 9.4038 2.8634 0.0020 11 6 9.6088 1.5425 0.0030 12 6 10.9443 0.8441 0.0029 13 1 10.8062 -0.2038 0.2693 14 7 11.8323 1.4854 0.9817 15 6 11.5689 0.9380 -1.3906 16 6 12.8640 0.1241 -1.4250 17 6 13.4789 0.2161 -2.7977 18 1 12.9942 0.7966 -3.5687 19 6 14.6597 -0.4417 -3.0697 20 7 15.2497 -1.1491 -2.1310 21 14 15.4223 -0.3271 -4.7711 22 1 14.5694 0.5237 -5.6395 23 1 16.7769 0.2722 -4.6671 24 1 15.5263 -1.6866 -5.3595 25 7 8.4313 0.9693 -0.0024 26 6 5.4609 0.5914 0.0016 27 7 4.1487 0.4694 0.0011 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.2134 3.6697 0.0006 34 1 5.6749 3.9770 0.0120 35 1 11.9761 2.4584 0.7565 36 1 11.4734 1.3804 1.9189 37 1 10.8713 0.5422 -2.1289 38 1 11.7887 1.9804 -1.6208 39 1 13.5615 0.5198 -0.6868 40 1 12.6442 -0.9184 -1.1947 41 1 16.0802 -1.6122 -2.3224 42 1 6.0799 -0.2935 0.0023 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822739509.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:29 Heat of formation + Delta-G solvation = 30.136161 kcal Electronic energy + Delta-G solvation = -24931.829531 eV Core-core repulsion = 21107.250358 eV Total energy + Delta-G solvation = -3824.579172 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -46.68476 -41.82327 -39.32406 -38.13321 -36.92404 -35.13441 -34.10589 -33.33727 -32.56289 -31.97722 -30.99402 -28.21756 -26.09675 -26.03450 -25.26382 -24.05892 -23.44069 -22.62186 -21.51254 -19.71117 -19.20418 -19.01489 -18.33451 -17.93882 -17.40840 -17.27672 -17.00472 -16.54264 -16.10969 -15.73067 -15.48604 -15.16368 -15.09988 -14.56296 -14.28901 -14.10505 -13.85747 -13.74754 -13.65108 -13.36713 -13.33467 -12.99439 -12.81820 -12.53350 -12.49716 -12.45033 -12.29493 -11.88242 -11.69789 -11.60156 -11.32122 -11.11070 -10.91980 -10.89697 -10.47618 -9.99839 -9.57137 -8.11831 -6.20933 -0.61385 -0.01646 0.13239 1.23571 1.43191 1.44382 1.56062 1.62398 1.84354 2.28105 2.46534 2.56008 2.73126 3.08919 3.21903 3.52894 3.62090 3.66205 3.85104 3.99509 4.05689 4.05923 4.14880 4.26835 4.37803 4.43024 4.50591 4.63545 4.75544 4.80967 4.84872 4.93092 4.93249 4.97985 5.14306 5.23037 5.25166 5.61052 5.86459 6.01243 6.02237 6.04161 6.32929 6.49379 6.54356 6.94441 6.97678 7.46909 8.99427 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.020963 B = 0.002102 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.337030 B =13320.318598 C =13959.786661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.058 3.942 3 O -0.307 6.307 4 C 0.328 3.672 5 C -0.182 4.182 6 C -0.002 4.002 7 C -0.128 4.128 8 C 0.217 3.783 9 N -0.391 5.391 10 O 0.077 5.923 11 C 0.173 3.827 12 C 0.200 3.800 13 H 0.126 0.874 14 N -0.818 5.818 15 C -0.090 4.090 16 C 0.038 3.962 17 C -0.542 4.542 18 H 0.055 0.945 19 C 0.003 3.997 20 N -0.927 5.927 21 Si 0.956 3.044 22 H -0.266 1.266 23 H -0.279 1.279 24 H -0.281 1.281 25 N -0.491 5.491 26 C 0.188 3.812 27 N -0.550 5.550 28 H 0.067 0.933 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.178 0.822 34 H 0.163 0.837 35 H 0.357 0.643 36 H 0.357 0.643 37 H 0.055 0.945 38 H 0.063 0.937 39 H 0.019 0.981 40 H -0.007 1.007 41 H 0.262 0.738 42 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.005 7.021 7.627 28.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.017 4.017 3 O -0.214 6.214 4 C 0.149 3.851 5 C -0.202 4.202 6 C -0.029 4.029 7 C -0.132 4.132 8 C -0.054 4.054 9 N -0.100 5.100 10 O 0.020 5.980 11 C -0.050 4.050 12 C 0.085 3.915 13 H 0.144 0.856 14 N -0.349 5.349 15 C -0.129 4.129 16 C 0.001 3.999 17 C -0.580 4.580 18 H 0.073 0.927 19 C -0.195 4.195 20 N -0.568 5.568 21 Si 0.782 3.218 22 H -0.190 1.190 23 H -0.205 1.205 24 H -0.207 1.207 25 N -0.224 5.224 26 C 0.030 3.970 27 N -0.273 5.273 28 H 0.086 0.914 29 H 0.116 0.884 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.195 0.805 34 H 0.180 0.820 35 H 0.172 0.828 36 H 0.172 0.828 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.038 0.962 40 H 0.011 0.989 41 H 0.070 0.930 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -27.564 6.223 7.431 29.219 hybrid contribution 0.563 0.874 -0.628 1.215 sum -27.001 7.097 6.802 28.735 Atomic orbital electron populations 1.21840 0.90783 1.04319 1.03523 1.22880 0.96459 0.79796 1.02549 1.86240 1.16031 1.32344 1.86801 1.20321 0.84593 0.90436 0.89766 1.21250 0.95078 0.96399 1.07489 1.21599 0.92166 0.98899 0.90209 1.18261 0.85954 0.96405 1.12619 1.23894 0.96661 0.84057 1.00779 1.74812 0.89473 1.23261 1.22475 1.85230 1.19803 1.27265 1.65720 1.30949 0.99650 0.80895 0.93538 1.20481 0.77603 0.97558 0.95863 0.85593 1.58764 1.48310 1.22424 1.05427 1.21560 0.97861 1.01338 0.92123 1.18839 0.91872 0.93761 0.95430 1.21746 1.07458 1.30206 0.98595 0.92670 1.25844 0.97784 0.95129 1.00726 1.70095 1.18813 1.33199 1.34671 0.85533 0.78356 0.77864 0.80070 1.18977 1.20477 1.20685 1.72002 0.98578 1.30520 1.21300 1.22601 0.88890 0.96588 0.88957 1.67464 1.05868 1.33416 1.20592 0.91439 0.88370 0.91338 0.91760 0.91601 0.80497 0.81988 0.82827 0.82799 0.92628 0.91878 0.96234 0.98872 0.92955 0.80864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.28 71.98 0.74 -0.55 16 2 C 0.06 0.83 6.02 71.98 0.43 1.26 16 3 O -0.31 -5.59 10.11 -89.21 -0.90 -6.49 16 4 C 0.33 6.61 7.49 84.81 0.64 7.24 16 5 C -0.18 -3.02 10.03 22.43 0.22 -2.79 16 6 C 0.00 -0.04 9.82 22.65 0.22 0.18 16 7 C -0.13 -3.04 5.89 -19.94 -0.12 -3.15 16 8 C 0.22 6.08 7.81 137.26 1.07 7.15 16 9 N -0.39 -11.17 11.93 -59.09 -0.70 -11.88 16 10 O 0.08 2.18 11.27 74.61 0.84 3.03 16 11 C 0.17 4.97 7.29 88.36 0.64 5.62 16 12 C 0.20 5.99 3.29 44.17 0.15 6.14 16 13 H 0.13 3.80 8.14 -2.39 -0.02 3.79 16 14 N -0.82 -21.68 8.67 -171.79 -1.49 -23.17 16 15 C -0.09 -3.40 4.78 30.59 0.15 -3.25 16 16 C 0.04 1.90 4.86 29.85 0.15 2.04 16 17 C -0.54 -30.03 9.11 25.60 0.23 -29.79 16 18 H 0.06 2.96 7.74 -2.91 -0.02 2.94 16 19 C 0.00 0.18 5.46 84.65 0.46 0.64 16 20 N -0.93 -55.42 13.29 21.45 0.28 -55.13 16 21 Si 0.96 43.98 29.54 68.60 2.03 46.00 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 24 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 25 N -0.49 -14.60 11.27 -302.47 -3.41 -18.01 16 26 C 0.19 4.36 10.86 84.93 0.92 5.28 16 27 N -0.55 -12.40 9.19 -308.06 -2.83 -15.23 16 28 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.06 0.98 8.10 -2.39 -0.02 0.96 16 32 H 0.07 0.97 8.10 -2.38 -0.02 0.95 16 33 H 0.18 1.88 8.06 -2.91 -0.02 1.85 16 34 H 0.16 2.59 7.95 -2.91 -0.02 2.57 16 35 H 0.36 8.62 8.97 -89.70 -0.80 7.81 16 36 H 0.36 7.50 9.06 -89.69 -0.81 6.69 16 37 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 38 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.02 1.02 7.75 -2.39 -0.02 1.00 16 40 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 41 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 42 H 0.17 3.88 7.88 -2.91 -0.02 3.86 16 Total: -1.00 -66.88 368.50 -0.83 -67.70 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -0.55 Total: 17.17 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: 5.91 Total: -3.99 kcal Atomic # 7 Polarization: -115.27 SS G_CDS: -8.15 Total: -123.42 kcal Atomic # 8 Polarization: -3.40 SS G_CDS: -0.06 Total: -3.46 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Total: -66.88 -0.83 -67.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822739509.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.840 kcal (2) G-P(sol) polarization free energy of solvation -66.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds