Wall clock time and date at job start Tue Mar 31 2020 14:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42897 * 109.46832 * 2 1 4 4 C 1.35622 * 117.00062 * 179.97438 * 3 2 1 5 5 C 1.39039 * 119.55686 * 180.02562 * 4 3 2 6 6 C 1.38119 * 119.23537 * 179.72218 * 5 4 3 7 7 C 1.39942 * 118.37591 * 0.49893 * 6 5 4 8 8 C 1.48356 * 120.47047 * 179.78092 * 7 6 5 9 9 N 1.30799 * 126.41532 * 359.40617 * 8 7 6 10 10 O 1.21294 * 110.08772 * 179.80739 * 9 8 7 11 11 C 1.33665 * 110.03512 * 0.46727 * 10 9 8 12 12 C 1.50696 * 126.43508 * 179.67694 * 11 10 9 13 13 H 1.09000 * 109.46965 * 195.03706 * 12 11 10 14 14 N 1.46892 * 109.47274 * 315.04114 * 12 11 10 15 15 C 1.53001 * 109.46998 * 75.04119 * 12 11 10 16 16 C 1.53006 * 109.47256 * 174.99767 * 15 12 11 17 17 C 1.50691 * 109.47298 * 179.97438 * 16 15 12 18 18 H 1.07999 * 120.00084 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99938 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99911 * 179.97438 * 19 17 16 21 21 Si 1.86790 * 120.00053 * 359.97438 * 19 17 16 22 22 H 1.48493 * 109.47393 * 90.00052 * 21 19 17 23 23 H 1.48500 * 109.47375 * 210.00336 * 21 19 17 24 24 H 1.48509 * 109.47101 * 330.00064 * 21 19 17 25 25 N 1.30976 * 107.13181 * 359.70870 * 11 10 9 26 26 C 1.39196 * 119.05680 * 359.50160 * 7 6 5 27 27 N 1.31781 * 120.66527 * 0.25781 * 26 7 6 28 28 H 1.09002 * 109.46932 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47437 * 300.00163 * 1 2 3 30 30 H 1.08998 * 109.46737 * 60.00299 * 1 2 3 31 31 H 1.08993 * 109.47437 * 239.99837 * 2 1 3 32 32 H 1.09001 * 109.47238 * 119.99666 * 2 1 3 33 33 H 1.07996 * 120.38258 * 359.96063 * 5 4 3 34 34 H 1.07996 * 120.80856 * 180.25697 * 6 5 4 35 35 H 1.00904 * 111.00152 * 60.00212 * 14 12 11 36 36 H 1.00903 * 111.00309 * 183.95314 * 14 12 11 37 37 H 1.09002 * 109.47393 * 295.00037 * 15 12 11 38 38 H 1.09000 * 109.47226 * 55.00308 * 15 12 11 39 39 H 1.09002 * 109.47139 * 300.00424 * 16 15 12 40 40 H 1.09007 * 109.46425 * 59.99747 * 16 15 12 41 41 H 0.96994 * 120.00210 * 179.97438 * 20 19 17 42 42 H 1.08000 * 119.66737 * 180.27008 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3508 1.5251 0.0005 5 6 3.8722 2.8140 0.0011 6 6 5.2424 2.9873 0.0075 7 6 6.0568 1.8493 0.0025 8 6 7.5345 1.9817 0.0041 9 7 8.2140 3.0993 -0.0009 10 8 9.4038 2.8635 0.0061 11 6 9.6089 1.5427 0.0062 12 6 10.9442 0.8443 0.0069 13 1 10.8063 -0.2035 -0.2598 14 7 11.8327 1.4857 -0.9713 15 6 11.5680 0.9380 1.4008 16 6 12.8632 0.1241 1.4358 17 6 13.4779 0.2169 2.8084 18 1 12.9932 0.7978 3.5791 19 6 14.6593 -0.4400 3.0806 20 7 15.1960 -0.3586 4.2785 21 14 15.4973 -1.4454 1.7480 22 1 16.4406 -0.5806 0.9948 23 1 16.2442 -2.5678 2.3706 24 1 14.4732 -1.9874 0.8190 25 7 8.4312 0.9694 0.0050 26 6 5.4608 0.5914 0.0019 27 7 4.1486 0.4695 0.0009 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.2133 3.6697 0.0005 34 1 5.6747 3.9770 0.0123 35 1 11.9764 2.4587 -0.7458 36 1 12.7125 0.9960 -1.0364 37 1 11.7877 1.9805 1.6313 38 1 10.8702 0.5420 2.1386 39 1 12.6435 -0.9184 1.2053 40 1 13.5611 0.5201 0.6979 41 1 16.0269 -0.8210 4.4701 42 1 6.0799 -0.2935 0.0024 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822739512.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:36 Heat of formation + Delta-G solvation = 55.318845 kcal Electronic energy + Delta-G solvation = -24982.783988 eV Core-core repulsion = 21159.296819 eV Total energy + Delta-G solvation = -3823.487169 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.49864 -40.98552 -38.52386 -37.05210 -35.80107 -33.42364 -32.95946 -32.56744 -31.66274 -30.52879 -30.11309 -27.05061 -25.06849 -24.96172 -24.09918 -22.91766 -22.67120 -21.13073 -20.21676 -18.92251 -18.00975 -17.82230 -17.19090 -16.82501 -16.68121 -16.23843 -15.96027 -14.91786 -14.65063 -14.41177 -14.38454 -14.29564 -13.81685 -13.73709 -13.43467 -13.01240 -12.98468 -12.85342 -12.69294 -12.61631 -12.06507 -11.95825 -11.94635 -11.41274 -11.14359 -11.12545 -11.02087 -10.58301 -10.25148 -10.17530 -10.05470 -9.99264 -9.88838 -9.37549 -8.75706 -8.65737 -8.62048 -6.15145 -4.15525 0.36389 0.81741 1.30857 2.34433 2.58315 2.83100 3.22193 3.30770 3.31360 3.31882 3.45695 3.79404 3.93934 4.34167 4.51475 4.53351 4.58678 4.61038 4.73570 4.79672 4.93806 4.98671 5.17311 5.23010 5.27343 5.33915 5.35758 5.41875 5.47893 5.58343 5.64955 5.82220 5.89772 5.98257 6.09194 6.19007 6.52498 6.82417 6.98957 7.00751 7.15706 7.41035 7.41412 7.63460 8.12801 8.39734 8.88500 9.45249 10.97942 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.023059 B = 0.002140 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.990774 B =13079.794793 C =13642.939425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.064 3.936 3 O -0.304 6.304 4 C 0.335 3.665 5 C -0.191 4.191 6 C -0.006 4.006 7 C -0.107 4.107 8 C 0.216 3.784 9 N -0.382 5.382 10 O 0.084 5.916 11 C 0.222 3.778 12 C 0.177 3.823 13 H 0.125 0.875 14 N -0.840 5.840 15 C -0.136 4.136 16 C -0.009 4.009 17 C -0.526 4.526 18 H 0.072 0.928 19 C 0.068 3.932 20 N -0.899 5.899 21 Si 0.880 3.120 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.264 1.264 25 N -0.481 5.481 26 C 0.191 3.809 27 N -0.539 5.539 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.347 0.653 36 H 0.363 0.637 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.022 0.978 40 H 0.014 0.986 41 H 0.265 0.735 42 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.909 3.752 -11.452 26.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 O -0.211 6.211 4 C 0.156 3.844 5 C -0.212 4.212 6 C -0.033 4.033 7 C -0.111 4.111 8 C -0.054 4.054 9 N -0.090 5.090 10 O 0.025 5.975 11 C 0.001 3.999 12 C 0.063 3.937 13 H 0.143 0.857 14 N -0.374 5.374 15 C -0.176 4.176 16 C -0.047 4.047 17 C -0.564 4.564 18 H 0.090 0.910 19 C -0.134 4.134 20 N -0.537 5.537 21 Si 0.707 3.293 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.189 1.189 25 N -0.214 5.214 26 C 0.032 3.968 27 N -0.262 5.262 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.167 0.833 34 H 0.168 0.832 35 H 0.160 0.840 36 H 0.180 0.820 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.040 0.960 40 H 0.032 0.968 41 H 0.074 0.926 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -25.588 3.318 -11.898 28.413 hybrid contribution 1.803 0.195 0.354 1.848 sum -23.784 3.512 -11.544 26.670 Atomic orbital electron populations 1.21828 0.92862 1.03055 1.03330 1.22679 0.94840 0.80725 1.02901 1.86228 1.16647 1.31129 1.87122 1.20001 0.84184 0.90020 0.90188 1.20969 0.95165 0.96004 1.09063 1.21435 0.91934 0.98996 0.90955 1.18145 0.86791 0.95426 1.10747 1.23475 0.95749 0.84396 1.01788 1.74844 0.89460 1.23058 1.21641 1.85248 1.19592 1.27283 1.65354 1.28904 0.97762 0.80450 0.92737 1.20276 0.81882 0.97122 0.94377 0.85742 1.58962 1.20319 1.07897 1.50173 1.22366 0.99645 1.02400 0.93167 1.19570 0.91571 0.95169 0.98361 1.21018 1.07494 1.32027 0.95833 0.90985 1.25041 0.96930 0.96024 0.95411 1.69903 1.19834 1.43373 1.20597 0.86775 0.79905 0.80297 0.82291 1.20184 1.21288 1.18853 1.71943 0.98062 1.29888 1.21495 1.22601 0.88709 0.96601 0.88869 1.67467 1.05964 1.32692 1.20050 0.90143 0.91594 0.91636 0.91338 0.91288 0.83302 0.83226 0.83998 0.82004 0.91522 0.91247 0.95967 0.96835 0.92559 0.80823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 10.28 37.16 0.38 -0.43 16 2 C 0.06 0.50 6.02 37.16 0.22 0.72 16 3 O -0.30 -3.02 10.11 -18.56 -0.19 -3.21 16 4 C 0.34 3.64 7.49 -17.04 -0.13 3.51 16 5 C -0.19 -1.81 10.03 -39.33 -0.39 -2.21 16 6 C -0.01 -0.07 9.82 -38.99 -0.38 -0.45 16 7 C -0.11 -1.33 5.89 -104.74 -0.62 -1.95 16 8 C 0.22 3.17 7.81 -156.10 -1.22 1.95 16 9 N -0.38 -5.79 11.93 30.98 0.37 -5.42 16 10 O 0.08 1.27 11.27 18.05 0.20 1.48 16 11 C 0.22 3.34 7.30 -12.99 -0.09 3.25 16 12 C 0.18 2.55 3.35 -68.87 -0.23 2.32 16 13 H 0.12 1.75 8.14 -51.93 -0.42 1.32 16 14 N -0.84 -10.80 9.17 -5.66 -0.05 -10.85 16 15 C -0.14 -2.35 4.78 -26.73 -0.13 -2.48 16 16 C -0.01 -0.19 3.81 -27.88 -0.11 -0.30 16 17 C -0.53 -14.09 9.66 -34.44 -0.33 -14.42 16 18 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 19 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 20 N -0.90 -26.81 13.96 55.43 0.77 -26.03 16 21 Si 0.88 20.39 27.47 -169.99 -4.67 15.73 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.26 -5.75 6.54 56.52 0.37 -5.38 16 25 N -0.48 -7.38 11.27 -9.88 -0.11 -7.49 16 26 C 0.19 2.26 10.86 -17.22 -0.19 2.07 16 27 N -0.54 -6.30 9.19 -13.05 -0.12 -6.42 16 28 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 32 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 33 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.15 1.37 7.94 -52.49 -0.42 0.96 16 35 H 0.35 4.14 8.97 -39.29 -0.35 3.79 16 36 H 0.36 4.52 7.55 -39.29 -0.30 4.22 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.02 0.47 7.20 -51.93 -0.37 0.09 16 40 H 0.01 0.27 6.30 -51.92 -0.33 -0.06 16 41 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.17 1.93 7.88 -52.49 -0.41 1.52 16 LS Contribution 362.94 15.07 5.47 5.47 Total: -1.00 -30.97 362.94 -7.20 -38.17 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -5.57 Total: 5.20 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -3.31 Total: -6.62 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: 0.86 Total: -56.20 kcal Atomic # 8 Polarization: -1.75 SS G_CDS: 0.02 Total: -1.73 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.67 Total: 15.73 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.97 -7.20 -38.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822739512.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.488 kcal (2) G-P(sol) polarization free energy of solvation -30.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds