Wall clock time and date at job start Tue Mar 31 2020 14:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42897 * 109.46832 * 2 1 4 4 C 1.35622 * 117.00062 * 179.97438 * 3 2 1 5 5 C 1.39039 * 119.55686 * 180.02562 * 4 3 2 6 6 C 1.38119 * 119.23537 * 179.72218 * 5 4 3 7 7 C 1.39942 * 118.37591 * 0.49893 * 6 5 4 8 8 C 1.48356 * 120.47047 * 179.78092 * 7 6 5 9 9 N 1.30799 * 126.41532 * 359.40617 * 8 7 6 10 10 O 1.21294 * 110.08772 * 179.80739 * 9 8 7 11 11 C 1.33665 * 110.03512 * 0.46727 * 10 9 8 12 12 C 1.50696 * 126.43508 * 179.67694 * 11 10 9 13 13 H 1.09000 * 109.46965 * 195.03706 * 12 11 10 14 14 N 1.46892 * 109.47274 * 315.04114 * 12 11 10 15 15 C 1.53001 * 109.46998 * 75.04119 * 12 11 10 16 16 C 1.53006 * 109.47256 * 174.99767 * 15 12 11 17 17 C 1.50691 * 109.47298 * 179.97438 * 16 15 12 18 18 H 1.07999 * 120.00084 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99938 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99911 * 179.97438 * 19 17 16 21 21 Si 1.86790 * 120.00053 * 359.97438 * 19 17 16 22 22 H 1.48493 * 109.47393 * 90.00052 * 21 19 17 23 23 H 1.48500 * 109.47375 * 210.00336 * 21 19 17 24 24 H 1.48509 * 109.47101 * 330.00064 * 21 19 17 25 25 N 1.30976 * 107.13181 * 359.70870 * 11 10 9 26 26 C 1.39196 * 119.05680 * 359.50160 * 7 6 5 27 27 N 1.31781 * 120.66527 * 0.25781 * 26 7 6 28 28 H 1.09002 * 109.46932 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47437 * 300.00163 * 1 2 3 30 30 H 1.08998 * 109.46737 * 60.00299 * 1 2 3 31 31 H 1.08993 * 109.47437 * 239.99837 * 2 1 3 32 32 H 1.09001 * 109.47238 * 119.99666 * 2 1 3 33 33 H 1.07996 * 120.38258 * 359.96063 * 5 4 3 34 34 H 1.07996 * 120.80856 * 180.25697 * 6 5 4 35 35 H 1.00904 * 111.00152 * 60.00212 * 14 12 11 36 36 H 1.00903 * 111.00309 * 183.95314 * 14 12 11 37 37 H 1.09002 * 109.47393 * 295.00037 * 15 12 11 38 38 H 1.09000 * 109.47226 * 55.00308 * 15 12 11 39 39 H 1.09002 * 109.47139 * 300.00424 * 16 15 12 40 40 H 1.09007 * 109.46425 * 59.99747 * 16 15 12 41 41 H 0.96994 * 120.00210 * 179.97438 * 20 19 17 42 42 H 1.08000 * 119.66737 * 180.27008 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3508 1.5251 0.0005 5 6 3.8722 2.8140 0.0011 6 6 5.2424 2.9873 0.0075 7 6 6.0568 1.8493 0.0025 8 6 7.5345 1.9817 0.0041 9 7 8.2140 3.0993 -0.0009 10 8 9.4038 2.8635 0.0061 11 6 9.6089 1.5427 0.0062 12 6 10.9442 0.8443 0.0069 13 1 10.8063 -0.2035 -0.2598 14 7 11.8327 1.4857 -0.9713 15 6 11.5680 0.9380 1.4008 16 6 12.8632 0.1241 1.4358 17 6 13.4779 0.2169 2.8084 18 1 12.9932 0.7978 3.5791 19 6 14.6593 -0.4400 3.0806 20 7 15.1960 -0.3586 4.2785 21 14 15.4973 -1.4454 1.7480 22 1 16.4406 -0.5806 0.9948 23 1 16.2442 -2.5678 2.3706 24 1 14.4732 -1.9874 0.8190 25 7 8.4312 0.9694 0.0050 26 6 5.4608 0.5914 0.0019 27 7 4.1486 0.4695 0.0009 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.2133 3.6697 0.0005 34 1 5.6747 3.9770 0.0123 35 1 11.9764 2.4587 -0.7458 36 1 12.7125 0.9960 -1.0364 37 1 11.7877 1.9805 1.6313 38 1 10.8702 0.5420 2.1386 39 1 12.6435 -0.9184 1.2053 40 1 13.5611 0.5201 0.6979 41 1 16.0269 -0.8210 4.4701 42 1 6.0799 -0.2935 0.0024 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822739512.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:35 Heat of formation + Delta-G solvation = 31.303823 kcal Electronic energy + Delta-G solvation = -24983.825357 eV Core-core repulsion = 21159.296819 eV Total energy + Delta-G solvation = -3824.528539 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -46.64620 -41.80382 -39.30586 -38.33767 -36.91884 -35.08454 -34.14275 -33.36794 -32.66305 -32.04458 -30.97855 -28.50732 -26.11651 -26.02952 -25.26040 -24.00271 -23.40614 -22.49525 -21.54389 -19.69455 -19.23097 -19.12976 -18.63078 -17.98831 -17.39401 -17.37990 -16.99765 -16.24092 -15.84727 -15.71191 -15.22068 -15.14501 -15.11894 -14.79053 -14.59049 -14.50058 -14.06363 -13.72695 -13.66602 -13.48164 -13.32550 -13.05659 -12.93370 -12.65285 -12.52276 -12.30430 -12.02844 -11.90200 -11.76835 -11.63429 -11.45937 -11.36919 -10.96387 -10.90117 -10.74217 -9.84627 -9.54831 -8.26985 -6.32900 -0.58341 0.00382 0.18211 1.26684 1.41693 1.44632 1.55280 1.67410 1.85881 2.26327 2.39514 2.58093 2.72605 3.09008 3.10884 3.55270 3.67046 3.69715 3.86805 3.94224 4.06158 4.06767 4.14535 4.16862 4.34468 4.44134 4.50377 4.61902 4.67783 4.70393 4.81182 4.85744 4.94151 4.94367 4.97402 5.15695 5.24223 5.37601 5.48919 5.64939 5.96391 6.05776 6.27231 6.44186 6.56126 6.76074 6.97944 7.31887 8.89787 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.023059 B = 0.002140 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.990774 B =13079.794793 C =13642.939425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.058 3.942 3 O -0.308 6.308 4 C 0.328 3.672 5 C -0.182 4.182 6 C -0.003 4.003 7 C -0.127 4.127 8 C 0.217 3.783 9 N -0.392 5.392 10 O 0.079 5.921 11 C 0.219 3.781 12 C 0.193 3.807 13 H 0.135 0.865 14 N -0.833 5.833 15 C -0.126 4.126 16 C -0.006 4.006 17 C -0.535 4.535 18 H 0.025 0.975 19 C 0.000 4.000 20 N -0.954 5.954 21 Si 0.954 3.046 22 H -0.263 1.263 23 H -0.293 1.293 24 H -0.234 1.234 25 N -0.491 5.491 26 C 0.188 3.812 27 N -0.549 5.549 28 H 0.098 0.902 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.177 0.823 34 H 0.162 0.838 35 H 0.354 0.646 36 H 0.369 0.631 37 H 0.062 0.938 38 H 0.053 0.947 39 H 0.031 0.969 40 H 0.037 0.963 41 H 0.265 0.735 42 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.082 3.507 -13.857 28.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.017 4.017 3 O -0.215 6.215 4 C 0.148 3.852 5 C -0.202 4.202 6 C -0.029 4.029 7 C -0.131 4.131 8 C -0.053 4.053 9 N -0.101 5.101 10 O 0.022 5.978 11 C -0.002 4.002 12 C 0.079 3.921 13 H 0.153 0.847 14 N -0.368 5.368 15 C -0.166 4.166 16 C -0.043 4.043 17 C -0.573 4.573 18 H 0.044 0.956 19 C -0.196 4.196 20 N -0.595 5.595 21 Si 0.776 3.224 22 H -0.187 1.187 23 H -0.219 1.219 24 H -0.157 1.157 25 N -0.225 5.225 26 C 0.030 3.970 27 N -0.273 5.273 28 H 0.116 0.884 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.195 0.805 34 H 0.180 0.820 35 H 0.167 0.833 36 H 0.186 0.814 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.049 0.951 40 H 0.055 0.945 41 H 0.074 0.926 42 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -26.777 3.092 -14.324 30.525 hybrid contribution 2.022 0.324 1.191 2.369 sum -24.755 3.416 -13.133 28.231 Atomic orbital electron populations 1.21838 0.90813 1.04311 1.03509 1.22874 0.96437 0.79812 1.02554 1.86242 1.16045 1.32335 1.86832 1.20314 0.84584 0.90437 0.89822 1.21244 0.95063 0.96408 1.07526 1.21601 0.92177 0.98933 0.90207 1.18259 0.85917 0.96427 1.12538 1.23836 0.96619 0.84014 1.00842 1.74822 0.89468 1.23316 1.22525 1.85230 1.19729 1.27278 1.65566 1.28963 0.97914 0.80532 0.92757 1.20039 0.81773 0.97838 0.92479 0.84726 1.58960 1.20424 1.08334 1.49045 1.22178 0.98022 1.01366 0.95078 1.19503 0.93184 0.96410 0.95253 1.21431 1.07457 1.30764 0.97668 0.95613 1.26109 0.97893 0.97575 0.98042 1.70086 1.20685 1.45243 1.23455 0.85608 0.79241 0.78259 0.79250 1.18736 1.21919 1.15729 1.71941 0.98358 1.30356 1.21802 1.22613 0.88881 0.96590 0.88937 1.67463 1.05874 1.33380 1.20598 0.88364 0.91469 0.91346 0.91577 0.91766 0.80539 0.82019 0.83281 0.81361 0.91948 0.92801 0.95093 0.94477 0.92595 0.80728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.28 71.98 0.74 -0.57 16 2 C 0.06 0.84 6.02 71.98 0.43 1.27 16 3 O -0.31 -5.67 10.11 -89.34 -0.90 -6.57 16 4 C 0.33 6.69 7.49 84.81 0.64 7.33 16 5 C -0.18 -3.10 10.03 22.43 0.22 -2.87 16 6 C 0.00 -0.05 9.82 22.65 0.22 0.17 16 7 C -0.13 -3.07 5.89 -19.94 -0.12 -3.18 16 8 C 0.22 6.23 7.81 137.26 1.07 7.30 16 9 N -0.39 -11.58 11.93 -59.07 -0.70 -12.28 16 10 O 0.08 2.33 11.27 74.64 0.84 3.17 16 11 C 0.22 6.36 7.30 88.35 0.64 7.01 16 12 C 0.19 5.20 3.35 44.17 0.15 5.35 16 13 H 0.14 3.43 8.14 -2.39 -0.02 3.41 16 14 N -0.83 -19.32 9.17 -171.82 -1.58 -20.90 16 15 C -0.13 -4.29 4.78 30.60 0.15 -4.14 16 16 C -0.01 -0.24 3.81 29.85 0.11 -0.13 16 17 C -0.54 -29.15 9.66 25.60 0.25 -28.91 16 18 H 0.03 1.58 7.99 -2.91 -0.02 1.56 16 19 C 0.00 0.02 5.47 84.66 0.46 0.48 16 20 N -0.95 -58.63 13.96 21.45 0.30 -58.33 16 21 Si 0.95 41.16 27.47 68.60 1.88 43.05 16 22 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 23 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 24 H -0.23 -8.94 6.54 99.48 0.65 -8.29 16 25 N -0.49 -14.71 11.27 -302.46 -3.41 -18.12 16 26 C 0.19 4.38 10.86 84.93 0.92 5.31 16 27 N -0.55 -12.48 9.19 -308.05 -2.83 -15.31 16 28 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 0.98 8.10 -2.39 -0.02 0.96 16 32 H 0.06 0.98 8.10 -2.39 -0.02 0.96 16 33 H 0.18 1.96 8.06 -2.91 -0.02 1.93 16 34 H 0.16 2.69 7.94 -2.91 -0.02 2.67 16 35 H 0.35 7.66 8.97 -89.69 -0.80 6.86 16 36 H 0.37 7.96 7.55 -89.69 -0.68 7.28 16 37 H 0.06 2.15 8.14 -2.39 -0.02 2.14 16 38 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.03 1.21 7.20 -2.39 -0.02 1.20 16 40 H 0.04 1.35 6.30 -2.38 -0.02 1.33 16 41 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 42 H 0.18 3.88 7.88 -2.91 -0.02 3.86 16 Total: -1.00 -68.14 362.94 -0.97 -69.11 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: -0.47 Total: 21.76 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: 5.90 Total: -5.58 kcal Atomic # 7 Polarization: -116.71 SS G_CDS: -8.22 Total: -124.94 kcal Atomic # 8 Polarization: -3.34 SS G_CDS: -0.06 Total: -3.41 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 1.88 Total: 43.05 kcal Total: -68.14 -0.97 -69.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822739512.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.418 kcal (2) G-P(sol) polarization free energy of solvation -68.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds