Wall clock time and date at job start Tue Mar 31 2020 14:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42898 * 109.47218 * 2 1 4 4 C 1.35567 * 116.99742 * 179.97438 * 3 2 1 5 5 N 1.32200 * 119.77523 * 0.25341 * 4 3 2 6 6 C 1.31926 * 121.77575 * 180.27193 * 5 4 3 7 7 C 1.38228 * 121.10346 * 359.46769 * 6 5 4 8 8 C 1.38505 * 119.41919 * 0.25831 * 7 6 5 9 9 C 1.39605 * 118.37356 * 0.02562 * 8 7 6 10 10 C 1.48285 * 120.56656 * 180.02562 * 9 8 7 11 11 N 1.30819 * 126.42594 * 179.68140 * 10 9 8 12 12 O 1.21284 * 110.08830 * 179.86710 * 11 10 9 13 13 C 1.33670 * 110.04066 * 0.40701 * 12 11 10 14 14 C 1.50699 * 126.42947 * 179.77407 * 13 12 11 15 15 H 1.09003 * 109.46660 * 164.97470 * 14 13 12 16 16 N 1.46893 * 109.47569 * 44.97432 * 14 13 12 17 17 C 1.53008 * 109.47025 * 284.96756 * 14 13 12 18 18 C 1.52995 * 109.47007 * 185.00185 * 17 14 13 19 19 C 1.50705 * 109.46694 * 180.02562 * 18 17 14 20 20 H 1.07991 * 120.00138 * 0.02562 * 19 18 17 21 21 C 1.37876 * 119.99523 * 180.02562 * 19 18 17 22 22 N 1.31523 * 119.99917 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00248 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47138 * 90.00083 * 23 21 19 25 25 H 1.48507 * 109.46858 * 209.99805 * 23 21 19 26 26 H 1.48494 * 109.47230 * 329.99658 * 23 21 19 27 27 N 1.30966 * 107.13468 * 359.74473 * 13 12 11 28 28 H 1.08994 * 109.47297 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47064 * 300.00148 * 1 2 3 30 30 H 1.09005 * 109.46617 * 59.99887 * 1 2 3 31 31 H 1.08998 * 109.47064 * 239.99851 * 2 1 3 32 32 H 1.08997 * 109.46774 * 120.00391 * 2 1 3 33 33 H 1.08002 * 119.45015 * 179.75455 * 6 5 4 34 34 H 1.08001 * 120.29052 * 180.27969 * 7 6 5 35 35 H 1.07999 * 120.81599 * 179.97438 * 8 7 6 36 36 H 1.00904 * 111.00327 * 176.05301 * 16 14 13 37 37 H 1.00908 * 110.99821 * 299.99542 * 16 14 13 38 38 H 1.09001 * 109.46771 * 305.00784 * 17 14 13 39 39 H 1.09005 * 109.46611 * 65.00391 * 17 14 13 40 40 H 1.08994 * 109.47504 * 300.00164 * 18 17 14 41 41 H 1.09005 * 109.47267 * 60.00608 * 18 17 14 42 42 H 0.97001 * 119.99714 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3504 1.5248 0.0005 5 7 4.1515 0.4732 -0.0040 6 6 5.4646 0.6002 0.0016 7 6 6.0615 1.8470 0.0016 8 6 5.2670 2.9815 0.0011 9 6 3.8803 2.8204 0.0010 10 6 2.9839 4.0016 -0.0001 11 7 1.6758 3.9841 -0.0061 12 8 1.2440 5.1175 -0.0027 13 6 2.2544 5.9926 -0.0028 14 6 2.1370 7.4950 -0.0040 15 1 3.0982 7.9347 0.2626 16 7 1.1217 7.9077 0.9741 17 6 1.7265 7.9735 -1.3981 18 6 1.7284 9.5030 -1.4335 19 6 1.3234 9.9742 -2.8065 20 1 1.0879 9.2547 -3.5766 21 6 1.2537 11.3238 -3.0794 22 7 0.8998 11.7351 -4.2775 23 14 1.6619 12.5684 -1.7474 24 1 3.1116 12.8866 -1.7948 25 1 0.8754 13.8082 -1.9707 26 1 1.3229 11.9999 -0.4181 27 7 3.3655 5.2992 -0.0012 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 6.0837 -0.2848 0.0016 34 1 7.1378 1.9356 0.0018 35 1 5.7094 3.9667 0.0015 36 1 1.0694 8.9133 1.0388 37 1 0.2209 7.5127 0.7487 38 1 2.4327 7.5920 -2.1357 39 1 0.7265 7.6059 -1.6285 40 1 1.0223 9.8844 -0.6960 41 1 2.7284 9.8706 -1.2031 42 1 0.8511 12.6847 -4.4695 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822741233.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:42 Heat of formation + Delta-G solvation = 59.426749 kcal Electronic energy + Delta-G solvation = -25758.568124 eV Core-core repulsion = 21935.259087 eV Total energy + Delta-G solvation = -3823.309037 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.37254 -40.92478 -38.29775 -36.98932 -35.86261 -33.34200 -32.80972 -32.45918 -31.48432 -30.48458 -30.04798 -26.98995 -25.35619 -24.61002 -23.90108 -23.02511 -22.34147 -21.19198 -20.19608 -18.75755 -17.89242 -17.65970 -17.11855 -16.79453 -16.53502 -16.21113 -15.87264 -15.19802 -14.46566 -14.32740 -14.28863 -14.22559 -13.72491 -13.59621 -13.33559 -12.85700 -12.79127 -12.69530 -12.65214 -12.42152 -12.02217 -11.89724 -11.75440 -11.43497 -11.05209 -11.03139 -10.96639 -10.59724 -10.22022 -10.08302 -10.04679 -9.93329 -9.71244 -9.35415 -8.71071 -8.63644 -8.57598 -6.13606 -4.13821 0.38226 0.94187 1.42091 2.44236 2.68787 2.96728 3.24134 3.31866 3.32619 3.36150 3.49397 3.90129 3.98017 4.35535 4.53026 4.59485 4.76437 4.76722 4.83685 4.90911 5.05691 5.07062 5.11775 5.19081 5.31768 5.42931 5.45211 5.59917 5.60191 5.70766 5.80506 5.85273 6.00447 6.08267 6.16852 6.23314 6.55976 6.96063 7.02640 7.05756 7.17804 7.43569 7.46302 7.65446 8.27961 8.41696 8.90293 9.46907 10.99553 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.019852 B = 0.002629 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.100354 B =10649.613545 C =11250.826926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.065 3.935 3 O -0.282 6.282 4 C 0.353 3.647 5 N -0.541 5.541 6 C 0.153 3.847 7 C -0.215 4.215 8 C 0.002 3.998 9 C -0.088 4.088 10 C 0.208 3.792 11 N -0.355 5.355 12 O 0.084 5.916 13 C 0.214 3.786 14 C 0.179 3.821 15 H 0.123 0.877 16 N -0.840 5.840 17 C -0.135 4.135 18 C -0.009 4.009 19 C -0.525 4.525 20 H 0.072 0.928 21 C 0.068 3.932 22 N -0.900 5.900 23 Si 0.882 3.118 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.264 1.264 27 N -0.480 5.480 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.165 0.835 34 H 0.146 0.854 35 H 0.155 0.845 36 H 0.363 0.637 37 H 0.347 0.653 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.018 0.982 41 H 0.017 0.983 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.570 -22.102 11.522 25.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.010 4.010 3 O -0.187 6.187 4 C 0.172 3.828 5 N -0.265 5.265 6 C -0.003 4.003 7 C -0.235 4.235 8 C -0.025 4.025 9 C -0.093 4.093 10 C -0.062 4.062 11 N -0.061 5.061 12 O 0.023 5.977 13 C -0.007 4.007 14 C 0.065 3.935 15 H 0.141 0.859 16 N -0.373 5.373 17 C -0.175 4.175 18 C -0.047 4.047 19 C -0.563 4.563 20 H 0.090 0.910 21 C -0.134 4.134 22 N -0.538 5.538 23 Si 0.709 3.291 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.189 1.189 27 N -0.214 5.214 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.182 0.818 34 H 0.164 0.836 35 H 0.172 0.828 36 H 0.179 0.821 37 H 0.160 0.840 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.036 0.964 41 H 0.036 0.964 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.296 -23.757 11.947 27.327 hybrid contribution 0.169 1.915 -0.359 1.955 sum 6.465 -21.843 11.589 25.557 Atomic orbital electron populations 1.21800 0.92717 1.02665 1.03783 1.22670 0.95171 0.80893 1.02309 1.86451 1.15666 1.30461 1.86170 1.19736 0.84800 0.88451 0.89843 1.67470 1.06686 1.31950 1.20402 1.22609 0.89091 0.97722 0.90923 1.21963 1.01808 0.92633 1.07098 1.21580 0.90358 1.00752 0.89846 1.17274 0.92179 0.86999 1.12853 1.23318 0.88552 0.91371 1.02945 1.75068 1.12150 0.99098 1.19762 1.85290 1.36404 1.10839 1.65140 1.28849 0.80915 0.97484 0.93442 1.20231 0.99492 0.79519 0.94277 0.85933 1.58963 1.10817 1.17330 1.50238 1.22357 1.01926 1.00021 0.93238 1.19569 0.96729 0.89859 0.98520 1.21029 1.46638 0.92816 0.95807 0.90992 1.25045 0.94474 0.98528 0.95382 1.69914 1.47918 1.15425 1.20559 0.86758 0.78720 0.80937 0.82709 1.20207 1.21340 1.18905 1.71909 1.27143 1.00835 1.21500 0.90351 0.91500 0.91429 0.91587 0.91642 0.81809 0.83634 0.82782 0.82066 0.84010 0.91346 0.91524 0.96381 0.96444 0.92576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.28 37.16 0.38 -0.92 16 2 C 0.06 0.66 6.03 37.16 0.22 0.89 16 3 O -0.28 -3.92 8.49 -18.40 -0.16 -4.07 16 4 C 0.35 4.78 7.50 -16.74 -0.13 4.65 16 5 N -0.54 -6.19 9.21 -13.06 -0.12 -6.31 16 6 C 0.15 1.28 11.17 -17.51 -0.20 1.09 16 7 C -0.21 -1.72 10.09 -39.49 -0.40 -2.12 16 8 C 0.00 0.02 9.83 -38.97 -0.38 -0.36 16 9 C -0.09 -1.23 5.91 -104.60 -0.62 -1.85 16 10 C 0.21 3.40 7.79 -156.10 -1.22 2.19 16 11 N -0.36 -6.06 10.73 30.97 0.33 -5.73 16 12 O 0.08 1.39 11.27 18.04 0.20 1.59 16 13 C 0.21 3.43 7.30 -12.99 -0.09 3.34 16 14 C 0.18 2.69 3.35 -68.86 -0.23 2.46 16 15 H 0.12 1.79 8.14 -51.93 -0.42 1.36 16 16 N -0.84 -11.38 9.17 -5.65 -0.05 -11.43 16 17 C -0.14 -2.43 4.78 -26.73 -0.13 -2.55 16 18 C -0.01 -0.20 3.81 -27.88 -0.11 -0.30 16 19 C -0.53 -14.23 9.66 -34.44 -0.33 -14.57 16 20 H 0.07 2.13 7.99 -52.49 -0.42 1.72 16 21 C 0.07 1.89 5.47 -17.82 -0.10 1.80 16 22 N -0.90 -27.05 13.96 55.43 0.77 -26.28 16 23 Si 0.88 20.59 27.47 -169.99 -4.67 15.92 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.26 -5.72 6.54 56.52 0.37 -5.35 16 27 N -0.48 -7.87 11.33 -9.88 -0.11 -7.99 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 32 H 0.07 0.62 8.11 -51.93 -0.42 0.20 16 33 H 0.16 0.77 8.06 -52.49 -0.42 0.34 16 34 H 0.15 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.15 1.54 7.95 -52.49 -0.42 1.12 16 36 H 0.36 4.76 7.55 -39.29 -0.30 4.46 16 37 H 0.35 4.41 8.97 -39.29 -0.35 4.05 16 38 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.02 0.37 5.93 -51.93 -0.31 0.06 16 41 H 0.02 0.37 7.57 -51.93 -0.39 -0.03 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 360.80 15.07 5.44 5.44 Total: -1.00 -32.58 360.80 -7.26 -39.84 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -5.58 Total: 5.29 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -3.32 Total: -6.27 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: 0.82 Total: -57.73 kcal Atomic # 8 Polarization: -2.53 SS G_CDS: 0.05 Total: -2.48 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.67 Total: 15.92 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.58 -7.26 -39.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822741233.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.264 kcal (2) G-P(sol) polarization free energy of solvation -32.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds