Wall clock time and date at job start Tue Mar 31 2020 14:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42898 * 109.47218 * 2 1 4 4 C 1.35567 * 116.99742 * 179.97438 * 3 2 1 5 5 N 1.32200 * 119.77523 * 0.25341 * 4 3 2 6 6 C 1.31926 * 121.77575 * 180.27193 * 5 4 3 7 7 C 1.38228 * 121.10346 * 359.46769 * 6 5 4 8 8 C 1.38505 * 119.41919 * 0.25831 * 7 6 5 9 9 C 1.39605 * 118.37356 * 0.02562 * 8 7 6 10 10 C 1.48285 * 120.56656 * 180.02562 * 9 8 7 11 11 N 1.30819 * 126.42594 * 179.68140 * 10 9 8 12 12 O 1.21284 * 110.08830 * 179.86710 * 11 10 9 13 13 C 1.33670 * 110.04066 * 0.40701 * 12 11 10 14 14 C 1.50699 * 126.42947 * 179.77407 * 13 12 11 15 15 H 1.09003 * 109.46660 * 164.97470 * 14 13 12 16 16 N 1.46893 * 109.47569 * 44.97432 * 14 13 12 17 17 C 1.53008 * 109.47025 * 284.96756 * 14 13 12 18 18 C 1.52995 * 109.47007 * 185.00185 * 17 14 13 19 19 C 1.50705 * 109.46694 * 180.02562 * 18 17 14 20 20 H 1.07991 * 120.00138 * 0.02562 * 19 18 17 21 21 C 1.37876 * 119.99523 * 180.02562 * 19 18 17 22 22 N 1.31523 * 119.99917 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00248 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47138 * 90.00083 * 23 21 19 25 25 H 1.48507 * 109.46858 * 209.99805 * 23 21 19 26 26 H 1.48494 * 109.47230 * 329.99658 * 23 21 19 27 27 N 1.30966 * 107.13468 * 359.74473 * 13 12 11 28 28 H 1.08994 * 109.47297 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47064 * 300.00148 * 1 2 3 30 30 H 1.09005 * 109.46617 * 59.99887 * 1 2 3 31 31 H 1.08998 * 109.47064 * 239.99851 * 2 1 3 32 32 H 1.08997 * 109.46774 * 120.00391 * 2 1 3 33 33 H 1.08002 * 119.45015 * 179.75455 * 6 5 4 34 34 H 1.08001 * 120.29052 * 180.27969 * 7 6 5 35 35 H 1.07999 * 120.81599 * 179.97438 * 8 7 6 36 36 H 1.00904 * 111.00327 * 176.05301 * 16 14 13 37 37 H 1.00908 * 110.99821 * 299.99542 * 16 14 13 38 38 H 1.09001 * 109.46771 * 305.00784 * 17 14 13 39 39 H 1.09005 * 109.46611 * 65.00391 * 17 14 13 40 40 H 1.08994 * 109.47504 * 300.00164 * 18 17 14 41 41 H 1.09005 * 109.47267 * 60.00608 * 18 17 14 42 42 H 0.97001 * 119.99714 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3504 1.5248 0.0005 5 7 4.1515 0.4732 -0.0040 6 6 5.4646 0.6002 0.0016 7 6 6.0615 1.8470 0.0016 8 6 5.2670 2.9815 0.0011 9 6 3.8803 2.8204 0.0010 10 6 2.9839 4.0016 -0.0001 11 7 1.6758 3.9841 -0.0061 12 8 1.2440 5.1175 -0.0027 13 6 2.2544 5.9926 -0.0028 14 6 2.1370 7.4950 -0.0040 15 1 3.0982 7.9347 0.2626 16 7 1.1217 7.9077 0.9741 17 6 1.7265 7.9735 -1.3981 18 6 1.7284 9.5030 -1.4335 19 6 1.3234 9.9742 -2.8065 20 1 1.0879 9.2547 -3.5766 21 6 1.2537 11.3238 -3.0794 22 7 0.8998 11.7351 -4.2775 23 14 1.6619 12.5684 -1.7474 24 1 3.1116 12.8866 -1.7948 25 1 0.8754 13.8082 -1.9707 26 1 1.3229 11.9999 -0.4181 27 7 3.3655 5.2992 -0.0012 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 6.0837 -0.2848 0.0016 34 1 7.1378 1.9356 0.0018 35 1 5.7094 3.9667 0.0015 36 1 1.0694 8.9133 1.0388 37 1 0.2209 7.5127 0.7487 38 1 2.4327 7.5920 -2.1357 39 1 0.7265 7.6059 -1.6285 40 1 1.0223 9.8844 -0.6960 41 1 2.7284 9.8706 -1.2031 42 1 0.8511 12.6847 -4.4695 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822741233.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:41 Heat of formation + Delta-G solvation = 33.533097 kcal Electronic energy + Delta-G solvation = -25759.690957 eV Core-core repulsion = 21935.259087 eV Total energy + Delta-G solvation = -3824.431870 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -46.61066 -41.75233 -39.14227 -38.34001 -37.04065 -35.09180 -34.02786 -33.25879 -32.63881 -32.03463 -30.91188 -28.50722 -26.33374 -25.96034 -24.96214 -24.15515 -23.17357 -22.60868 -21.59455 -19.61373 -19.21237 -19.08033 -18.54670 -17.94411 -17.39412 -17.37965 -16.86881 -16.23636 -16.03922 -15.71995 -15.21265 -15.11458 -15.06191 -14.71987 -14.61834 -14.35351 -13.99861 -13.51237 -13.47509 -13.45048 -13.22132 -13.15122 -13.02591 -12.71950 -12.52181 -12.28264 -12.01233 -11.85212 -11.80210 -11.68336 -11.52416 -11.39121 -10.85724 -10.75305 -10.70584 -9.85350 -9.50365 -8.27678 -6.33869 -0.52324 0.15100 0.22369 1.31524 1.42318 1.43734 1.54929 1.72117 1.89957 2.26812 2.39183 2.67307 2.80375 3.08299 3.20551 3.57451 3.68820 3.90631 3.92596 3.95685 4.01041 4.11433 4.12828 4.20681 4.33216 4.37086 4.51360 4.63695 4.67716 4.76251 4.83334 4.86828 4.91479 4.93102 5.12623 5.14419 5.36256 5.38893 5.47556 5.63939 5.95008 6.13591 6.26521 6.42753 6.64910 6.74994 7.05859 7.30991 8.89269 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.019852 B = 0.002629 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.100354 B =10649.613545 C =11250.826926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.062 3.938 3 O -0.308 6.308 4 C 0.336 3.664 5 N -0.551 5.551 6 C 0.159 3.841 7 C -0.198 4.198 8 C -0.003 4.003 9 C -0.128 4.128 10 C 0.208 3.792 11 N -0.377 5.377 12 O 0.077 5.923 13 C 0.210 3.790 14 C 0.195 3.805 15 H 0.136 0.864 16 N -0.833 5.833 17 C -0.125 4.125 18 C -0.005 4.005 19 C -0.536 4.536 20 H 0.024 0.976 21 C 0.000 4.000 22 N -0.955 5.955 23 Si 0.955 3.045 24 H -0.269 1.269 25 H -0.291 1.291 26 H -0.228 1.228 27 N -0.487 5.487 28 H 0.106 0.894 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.208 0.792 34 H 0.187 0.813 35 H 0.159 0.841 36 H 0.369 0.631 37 H 0.353 0.647 38 H 0.052 0.948 39 H 0.059 0.941 40 H 0.039 0.961 41 H 0.030 0.970 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.668 -22.991 13.984 28.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.013 4.013 3 O -0.215 6.215 4 C 0.156 3.844 5 N -0.276 5.276 6 C 0.003 3.997 7 C -0.217 4.217 8 C -0.030 4.030 9 C -0.133 4.133 10 C -0.062 4.062 11 N -0.085 5.085 12 O 0.018 5.982 13 C -0.011 4.011 14 C 0.081 3.919 15 H 0.153 0.847 16 N -0.367 5.367 17 C -0.166 4.166 18 C -0.042 4.042 19 C -0.574 4.574 20 H 0.042 0.958 21 C -0.196 4.196 22 N -0.596 5.596 23 Si 0.777 3.223 24 H -0.194 1.194 25 H -0.217 1.217 26 H -0.151 1.151 27 N -0.221 5.221 28 H 0.124 0.876 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.225 0.775 34 H 0.204 0.796 35 H 0.176 0.824 36 H 0.186 0.814 37 H 0.166 0.834 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.057 0.943 41 H 0.049 0.951 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.377 -24.661 14.431 29.776 hybrid contribution -0.400 2.010 -1.220 2.385 sum 7.977 -22.651 13.211 27.409 Atomic orbital electron populations 1.21817 0.91703 1.04163 1.02772 1.22845 0.95971 0.79831 1.02645 1.86419 1.16402 1.32245 1.86385 1.19880 0.84991 0.88873 0.90674 1.67562 1.08005 1.31168 1.20823 1.23449 0.88340 0.99597 0.88330 1.22404 1.03487 0.91315 1.04508 1.21813 0.89378 1.02194 0.89587 1.17569 0.93263 0.86461 1.15992 1.23834 0.88655 0.92070 1.01650 1.75056 1.12884 0.99243 1.21283 1.85262 1.36567 1.10888 1.65464 1.29015 0.80975 0.97777 0.93360 1.20021 1.00468 0.79005 0.92435 0.84653 1.58958 1.10877 1.17779 1.49129 1.22170 1.01329 0.98005 0.95071 1.19498 0.97526 0.91853 0.95370 1.21428 1.46065 0.92270 0.97608 0.95754 1.26123 0.94303 1.01127 0.98065 1.70096 1.50056 1.15989 1.23449 0.85594 0.78574 0.77421 0.80666 1.19413 1.21711 1.15072 1.71896 1.27291 1.01071 1.21837 0.87559 0.92269 0.92583 0.91331 0.91052 0.77538 0.79593 0.82363 0.81360 0.83394 0.92931 0.92206 0.94266 0.95133 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 10.28 71.98 0.74 -1.77 16 2 C 0.06 1.27 6.03 71.98 0.43 1.70 16 3 O -0.31 -8.81 8.49 -88.74 -0.75 -9.56 16 4 C 0.34 9.09 7.50 85.06 0.64 9.73 16 5 N -0.55 -11.76 9.21 -308.17 -2.84 -14.59 16 6 C 0.16 2.13 11.17 84.68 0.95 3.08 16 7 C -0.20 -2.49 10.09 22.33 0.23 -2.26 16 8 C 0.00 -0.06 9.83 22.66 0.22 0.17 16 9 C -0.13 -3.57 5.91 -19.85 -0.12 -3.69 16 10 C 0.21 6.91 7.79 137.23 1.07 7.98 16 11 N -0.38 -13.27 10.73 -59.07 -0.63 -13.91 16 12 O 0.08 2.58 11.27 74.61 0.84 3.42 16 13 C 0.21 6.70 7.30 88.36 0.64 7.34 16 14 C 0.19 5.61 3.35 44.17 0.15 5.76 16 15 H 0.14 3.62 8.14 -2.39 -0.02 3.60 16 16 N -0.83 -20.85 9.17 -171.80 -1.58 -22.43 16 17 C -0.13 -4.47 4.78 30.60 0.15 -4.32 16 18 C 0.00 -0.21 3.81 29.85 0.11 -0.09 16 19 C -0.54 -29.64 9.66 25.60 0.25 -29.40 16 20 H 0.02 1.52 7.99 -2.92 -0.02 1.50 16 21 C 0.00 0.02 5.47 84.65 0.46 0.48 16 22 N -0.96 -59.27 13.96 21.45 0.30 -58.97 16 23 Si 0.95 41.51 27.47 68.60 1.88 43.40 16 24 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 25 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 26 H -0.23 -8.53 6.54 99.48 0.65 -7.87 16 27 N -0.49 -15.95 11.33 -302.47 -3.43 -19.38 16 28 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.07 1.32 8.10 -2.39 -0.02 1.31 16 32 H 0.07 1.33 8.11 -2.39 -0.02 1.31 16 33 H 0.21 0.89 8.06 -2.91 -0.02 0.87 16 34 H 0.19 0.82 8.06 -2.91 -0.02 0.79 16 35 H 0.16 2.96 7.95 -2.91 -0.02 2.93 16 36 H 0.37 8.53 7.55 -89.69 -0.68 7.85 16 37 H 0.35 8.42 8.97 -89.69 -0.80 7.61 16 38 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 40 H 0.04 1.48 5.93 -2.39 -0.01 1.46 16 41 H 0.03 1.20 7.57 -2.38 -0.02 1.18 16 42 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -74.65 360.80 -0.75 -75.40 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: -0.47 Total: 21.90 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: 5.92 Total: -5.29 kcal Atomic # 7 Polarization: -121.10 SS G_CDS: -8.18 Total: -129.28 kcal Atomic # 8 Polarization: -6.22 SS G_CDS: 0.09 Total: -6.14 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 1.88 Total: 43.40 kcal Total: -74.65 -0.75 -75.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822741233.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.936 kcal (2) G-P(sol) polarization free energy of solvation -74.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds