Wall clock time and date at job start Tue Mar 31 2020 14:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42896 * 109.46848 * 2 1 4 4 C 1.35570 * 116.99660 * 179.97438 * 3 2 1 5 5 N 1.32191 * 119.77534 * 0.24773 * 4 3 2 6 6 C 1.31925 * 121.77524 * 180.28899 * 5 4 3 7 7 C 1.38230 * 121.10699 * 359.74548 * 6 5 4 8 8 C 1.38506 * 119.41531 * 359.97438 * 7 6 5 9 9 C 1.39610 * 118.37359 * 359.97438 * 8 7 6 10 10 C 1.48289 * 120.56214 * 180.02562 * 9 8 7 11 11 N 1.30816 * 126.41975 * 179.97438 * 10 9 8 12 12 O 1.21288 * 110.09271 * 180.02562 * 11 10 9 13 13 C 1.33680 * 110.03307 * 0.02562 * 12 11 10 14 14 C 1.50698 * 126.42996 * 179.97438 * 13 12 11 15 15 H 1.09000 * 109.46862 * 195.02041 * 14 13 12 16 16 N 1.46901 * 109.47246 * 315.02155 * 14 13 12 17 17 C 1.53006 * 109.46914 * 75.02093 * 14 13 12 18 18 C 1.52999 * 109.46626 * 174.99639 * 17 14 13 19 19 C 1.50706 * 109.46957 * 180.02562 * 18 17 14 20 20 H 1.07999 * 119.99816 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00340 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99773 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00296 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47118 * 89.99310 * 23 21 19 25 25 H 1.48494 * 109.47201 * 209.99478 * 23 21 19 26 26 H 1.48498 * 109.47011 * 329.99452 * 23 21 19 27 27 N 1.30970 * 107.13721 * 0.23842 * 13 12 11 28 28 H 1.09004 * 109.46849 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47229 * 299.99775 * 1 2 3 30 30 H 1.08994 * 109.47027 * 60.00235 * 1 2 3 31 31 H 1.08993 * 109.47166 * 239.99587 * 2 1 3 32 32 H 1.09001 * 109.46843 * 120.00137 * 2 1 3 33 33 H 1.08005 * 119.44787 * 179.72854 * 6 5 4 34 34 H 1.08001 * 120.29315 * 180.02562 * 7 6 5 35 35 H 1.07998 * 120.81629 * 179.97438 * 8 7 6 36 36 H 1.00906 * 110.99754 * 59.99985 * 16 14 13 37 37 H 1.00894 * 110.99732 * 183.95542 * 16 14 13 38 38 H 1.08993 * 109.46955 * 295.00111 * 17 14 13 39 39 H 1.09000 * 109.47050 * 54.99940 * 17 14 13 40 40 H 1.08993 * 109.47839 * 299.99931 * 18 17 14 41 41 H 1.09000 * 109.47160 * 60.00369 * 18 17 14 42 42 H 0.97000 * 120.00540 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3503 1.5249 0.0005 5 7 4.1515 0.4734 -0.0039 6 6 5.4646 0.6004 0.0021 7 6 6.0614 1.8472 0.0081 8 6 5.2669 2.9818 0.0073 9 6 3.8801 2.8205 -0.0002 10 6 2.9837 4.0018 -0.0020 11 7 1.6757 3.9842 -0.0092 12 8 1.2437 5.1175 -0.0090 13 6 2.2541 5.9927 -0.0021 14 6 2.1366 7.4951 -0.0002 15 1 3.0993 7.9351 -0.2606 16 7 1.1270 7.9087 -0.9838 17 6 1.7177 7.9721 1.3920 18 6 1.7194 9.5016 1.4288 19 6 1.3074 9.9715 2.8002 20 1 1.0687 9.2512 3.5687 21 6 1.2352 11.3209 3.0739 22 7 1.5264 12.1981 2.1382 23 14 0.7253 11.9033 4.7739 24 1 1.9301 12.0469 5.6300 25 1 0.0381 13.2150 4.6623 26 1 -0.1978 10.9110 5.3808 27 7 3.3652 5.2994 -0.0031 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 6.0837 -0.2846 0.0025 34 1 7.1377 1.9360 0.0125 35 1 5.7092 3.9670 0.0123 36 1 0.2250 7.5134 -0.7642 37 1 1.0753 8.9143 -1.0479 38 1 0.7165 7.6043 1.6160 39 1 2.4195 7.5900 2.1334 40 1 2.7207 9.8695 1.2048 41 1 1.0177 9.8837 0.6875 42 1 1.4760 13.1474 2.3307 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822741235.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:46 Heat of formation + Delta-G solvation = 31.600565 kcal Electronic energy + Delta-G solvation = -25708.634644 eV Core-core repulsion = 21884.118972 eV Total energy + Delta-G solvation = -3824.515671 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.60112 -41.74941 -39.13781 -38.28310 -37.03374 -35.14315 -34.00176 -33.24864 -32.54122 -31.73947 -30.90517 -28.25048 -26.32938 -26.03234 -24.99971 -24.20395 -23.17005 -22.79136 -21.58741 -19.60463 -19.13800 -18.93609 -18.36751 -17.89989 -17.38809 -17.31821 -16.86077 -16.46057 -16.02599 -15.66429 -15.14228 -15.08178 -15.05777 -14.80446 -14.35748 -14.13479 -13.95586 -13.50399 -13.47041 -13.40888 -13.18519 -13.14634 -12.93853 -12.74312 -12.52256 -12.50138 -12.20728 -11.86267 -11.79585 -11.69642 -11.45001 -11.26987 -10.85496 -10.70157 -10.54487 -9.84185 -9.50008 -8.20550 -6.29991 -0.52153 0.15294 0.22249 1.31951 1.40750 1.41647 1.51848 1.71380 1.90219 2.27271 2.41315 2.67619 2.80703 3.13745 3.21002 3.58214 3.71765 3.91639 3.93210 4.01616 4.01724 4.12172 4.14819 4.21862 4.34456 4.37936 4.54122 4.66181 4.76302 4.78759 4.86488 4.87497 4.91991 5.06118 5.13150 5.15023 5.39161 5.48032 5.66833 5.81583 5.95880 6.14084 6.22168 6.41946 6.65112 6.84851 7.05914 7.38876 8.90272 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.018130 B = 0.002555 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.053793 B =10958.045992 C =11398.898185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.062 3.938 3 O -0.308 6.308 4 C 0.337 3.663 5 N -0.551 5.551 6 C 0.160 3.840 7 C -0.197 4.197 8 C -0.003 4.003 9 C -0.127 4.127 10 C 0.209 3.791 11 N -0.376 5.376 12 O 0.077 5.923 13 C 0.213 3.787 14 C 0.195 3.805 15 H 0.125 0.875 16 N -0.833 5.833 17 C -0.127 4.127 18 C 0.031 3.969 19 C -0.545 4.545 20 H 0.053 0.947 21 C 0.008 3.992 22 N -0.925 5.925 23 Si 0.956 3.044 24 H -0.275 1.275 25 H -0.281 1.281 26 H -0.268 1.268 27 N -0.489 5.489 28 H 0.106 0.894 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.209 0.791 34 H 0.187 0.813 35 H 0.157 0.843 36 H 0.351 0.649 37 H 0.367 0.633 38 H 0.062 0.938 39 H 0.054 0.946 40 H 0.002 0.998 41 H 0.016 0.984 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.400 -24.613 -6.221 26.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.013 4.013 3 O -0.214 6.214 4 C 0.157 3.843 5 N -0.275 5.275 6 C 0.003 3.997 7 C -0.217 4.217 8 C -0.030 4.030 9 C -0.133 4.133 10 C -0.062 4.062 11 N -0.084 5.084 12 O 0.019 5.981 13 C -0.009 4.009 14 C 0.081 3.919 15 H 0.143 0.857 16 N -0.367 5.367 17 C -0.168 4.168 18 C -0.006 4.006 19 C -0.583 4.583 20 H 0.072 0.928 21 C -0.191 4.191 22 N -0.565 5.565 23 Si 0.781 3.219 24 H -0.201 1.201 25 H -0.207 1.207 26 H -0.192 1.192 27 N -0.223 5.223 28 H 0.124 0.876 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.225 0.775 34 H 0.204 0.796 35 H 0.175 0.825 36 H 0.165 0.835 37 H 0.184 0.816 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.020 0.980 41 H 0.034 0.966 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.153 -26.234 -6.826 27.797 hybrid contribution -0.553 2.000 1.676 2.667 sum 5.601 -24.235 -5.149 25.401 Atomic orbital electron populations 1.21818 0.91692 1.04162 1.02779 1.22849 0.95981 0.79820 1.02656 1.86421 1.16375 1.32259 1.86379 1.19863 0.85002 0.88824 0.90651 1.67562 1.07985 1.31128 1.20823 1.23451 0.88347 0.99565 0.88301 1.22401 1.03472 0.91307 1.04516 1.21811 0.89424 1.02176 0.89621 1.17566 0.93228 0.86460 1.16003 1.23843 0.88685 0.92023 1.01612 1.75045 1.12827 0.99197 1.21339 1.85267 1.36502 1.10875 1.65502 1.28971 0.80999 0.97618 0.93264 1.19968 1.00086 0.78998 0.92861 0.85703 1.58959 1.11013 1.17724 1.49004 1.22284 1.01143 0.98583 0.94747 1.18960 0.96139 0.89461 0.96050 1.21599 1.46073 0.92057 0.98588 0.92833 1.25806 0.95332 0.97178 1.00781 1.70041 1.49727 1.01911 1.34780 0.85580 0.78538 0.77745 0.80004 1.20087 1.20652 1.19214 1.71913 1.27286 1.01150 1.21919 0.87552 0.92510 0.92333 0.91102 0.91259 0.77485 0.79608 0.82500 0.83523 0.81558 0.91900 0.92733 0.97960 0.96569 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 10.28 71.98 0.74 -1.76 16 2 C 0.06 1.26 6.03 71.98 0.43 1.70 16 3 O -0.31 -8.84 8.49 -88.78 -0.75 -9.60 16 4 C 0.34 9.19 7.50 85.06 0.64 9.83 16 5 N -0.55 -11.82 9.21 -308.18 -2.84 -14.66 16 6 C 0.16 2.17 11.17 84.68 0.95 3.12 16 7 C -0.20 -2.57 10.09 22.33 0.23 -2.34 16 8 C 0.00 -0.07 9.83 22.67 0.22 0.15 16 9 C -0.13 -3.63 5.91 -19.85 -0.12 -3.75 16 10 C 0.21 7.10 7.79 137.23 1.07 8.17 16 11 N -0.38 -13.49 10.73 -59.05 -0.63 -14.12 16 12 O 0.08 2.67 11.27 74.52 0.84 3.51 16 13 C 0.21 7.18 7.30 88.35 0.64 7.82 16 14 C 0.19 6.32 3.35 44.17 0.15 6.47 16 15 H 0.13 4.02 8.14 -2.39 -0.02 4.00 16 16 N -0.83 -24.40 9.17 -171.79 -1.58 -25.97 16 17 C -0.13 -4.84 4.78 30.60 0.15 -4.69 16 18 C 0.03 1.47 4.74 29.85 0.14 1.61 16 19 C -0.55 -29.49 9.11 25.60 0.23 -29.25 16 20 H 0.05 2.85 7.74 -2.91 -0.02 2.82 16 21 C 0.01 0.43 5.46 84.65 0.46 0.89 16 22 N -0.92 -53.32 13.29 21.45 0.28 -53.03 16 23 Si 0.96 43.08 29.54 68.60 2.03 45.11 16 24 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 25 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 26 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 27 N -0.49 -16.76 11.33 -302.43 -3.43 -20.18 16 28 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 29 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.07 1.33 8.10 -2.39 -0.02 1.32 16 32 H 0.07 1.33 8.11 -2.39 -0.02 1.31 16 33 H 0.21 0.92 8.06 -2.91 -0.02 0.90 16 34 H 0.19 0.90 8.06 -2.91 -0.02 0.87 16 35 H 0.16 3.08 7.95 -2.91 -0.02 3.06 16 36 H 0.35 9.58 8.97 -89.69 -0.80 8.78 16 37 H 0.37 10.83 7.55 -89.70 -0.68 10.15 16 38 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 41 H 0.02 0.77 6.87 -2.39 -0.02 0.75 16 42 H 0.26 14.42 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -69.10 364.40 -0.56 -69.66 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: -0.42 Total: 21.31 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: 5.93 Total: -2.02 kcal Atomic # 7 Polarization: -119.78 SS G_CDS: -8.19 Total: -127.97 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: 0.09 Total: -6.09 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -69.10 -0.56 -69.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822741235.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.259 kcal (2) G-P(sol) polarization free energy of solvation -69.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds