Wall clock time and date at job start Tue Mar 31 2020 13:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.46884 * 2 1 4 4 O 1.21279 * 120.00317 * 359.97438 * 3 2 1 5 5 N 1.34782 * 120.00002 * 180.02562 * 3 2 1 6 6 C 1.47551 * 126.85982 * 179.97438 * 5 3 2 7 7 C 1.54336 * 104.01422 * 151.58275 * 6 5 3 8 8 N 1.47242 * 104.91037 * 28.35620 * 7 6 5 9 9 C 1.34772 * 126.21730 * 162.72112 * 8 7 6 10 10 O 1.21576 * 120.00545 * 179.68747 * 9 8 7 11 11 N 1.34777 * 120.00090 * 359.69358 * 9 8 7 12 12 C 1.39249 * 120.00324 * 185.16476 * 11 9 8 13 13 C 1.39680 * 119.57508 * 174.66332 * 12 11 9 14 14 C 1.38650 * 119.49609 * 179.97438 * 13 12 11 15 15 C 1.38351 * 118.66664 * 0.28062 * 14 13 12 16 16 C 1.40573 * 119.13294 * 359.43434 * 15 14 13 17 17 C 1.41331 * 119.78758 * 180.31918 * 16 15 14 18 18 H 1.07995 * 120.00287 * 0.25477 * 17 16 15 19 19 C 1.40029 * 120.00029 * 180.25441 * 17 16 15 20 20 N 1.30749 * 119.99955 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00298 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46938 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47273 * 119.99619 * 21 19 17 24 24 H 1.48495 * 109.46916 * 240.00037 * 21 19 17 25 25 N 1.31900 * 119.57188 * 354.63643 * 12 11 9 26 26 C 1.46828 * 107.56872 * 342.45966 * 8 7 6 27 27 H 1.08999 * 109.47160 * 60.00566 * 1 2 3 28 28 H 1.08999 * 109.47003 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47625 * 300.00467 * 1 2 3 30 30 H 1.08992 * 109.47151 * 239.99936 * 2 1 3 31 31 H 1.09007 * 109.46925 * 119.99276 * 2 1 3 32 32 H 1.08993 * 110.50644 * 270.45724 * 6 5 3 33 33 H 1.09005 * 110.50259 * 33.01304 * 6 5 3 34 34 H 1.09001 * 110.48176 * 269.45695 * 7 6 5 35 35 H 1.09006 * 110.28354 * 147.15171 * 7 6 5 36 36 H 0.97005 * 119.99778 * 5.15693 * 11 9 8 37 37 H 1.08003 * 120.25601 * 0.02562 * 13 12 11 38 38 H 1.07999 * 120.66742 * 180.02562 * 14 13 12 39 39 H 1.08004 * 120.43484 * 179.70006 * 15 14 13 40 40 H 0.96997 * 120.00048 * 180.02562 * 20 19 17 41 41 H 1.09005 * 109.67709 * 119.90990 * 26 8 7 42 42 H 1.09000 * 109.68082 * 240.41384 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6672 -0.0005 6 6 4.0118 2.9896 -0.0011 7 6 5.3582 2.7407 0.7111 8 7 5.6770 1.3297 0.4363 9 6 6.8847 0.7461 0.5673 10 8 7.0199 -0.4352 0.3134 11 7 7.9426 1.4718 0.9801 12 6 9.2108 0.8977 1.0128 13 6 10.3171 1.6875 1.3341 14 6 11.5790 1.1140 1.3667 15 6 11.7042 -0.2319 1.0718 16 6 10.5517 -0.9746 0.7617 17 6 10.6627 -2.3519 0.4649 18 1 11.6302 -2.8315 0.4809 19 6 9.5182 -3.0948 0.1502 20 7 8.3468 -2.5144 0.1314 21 14 9.6648 -4.9154 -0.2413 22 1 11.0886 -5.3279 -0.1518 23 1 8.8603 -5.6974 0.7316 24 1 9.1622 -5.1682 -1.6156 25 7 9.3518 -0.3852 0.7404 26 6 4.4388 0.6725 -0.0005 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 4.1735 3.3351 -1.0221 33 1 3.4140 3.7117 0.5551 34 1 5.2580 2.9043 1.7841 35 1 6.1298 3.3906 0.2984 36 1 7.8207 2.3943 1.2544 37 1 10.1905 2.7368 1.5564 38 1 12.4474 1.7069 1.6132 39 1 12.6742 -0.7068 1.0839 40 1 7.5539 -3.0291 -0.0862 41 1 4.5702 0.2733 -1.0062 42 1 4.1909 -0.1370 0.6861 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881144072.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:47 Heat of formation + Delta-G solvation = 20.019645 kcal Electronic energy + Delta-G solvation = -26587.201874 eV Core-core repulsion = 22762.184017 eV Total energy + Delta-G solvation = -3825.017858 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.56907 -39.41667 -38.12106 -36.90017 -34.19409 -33.39283 -33.02116 -32.69556 -30.33785 -29.99410 -29.06251 -26.22165 -25.41919 -24.52362 -22.64659 -21.91635 -21.23173 -19.59595 -19.41791 -18.25390 -17.46202 -16.96667 -16.44428 -16.11658 -15.62631 -15.37062 -14.79581 -14.52382 -14.37351 -14.17404 -13.85744 -13.67303 -13.22250 -13.06030 -12.87831 -12.76332 -12.55710 -12.39875 -12.13587 -11.95361 -11.86747 -11.82815 -11.37490 -11.19591 -10.96242 -10.65990 -10.50064 -10.15051 -9.94153 -9.79237 -9.31506 -9.12601 -9.04763 -8.38699 -7.99538 -7.28900 -7.01163 -6.15563 -4.42119 2.31832 2.42720 2.78726 3.06624 3.08012 3.16344 3.19695 3.24367 4.00334 4.04833 4.13086 4.34471 4.50442 4.81582 4.83631 4.87725 4.91335 4.97374 5.23058 5.34996 5.39641 5.48772 5.58778 5.61626 5.72514 5.74831 5.99128 6.00782 6.05043 6.27214 6.45889 6.62309 6.73217 6.81851 7.04049 7.20442 7.37747 7.57248 7.66282 7.78116 7.87936 8.11310 8.21691 8.51083 8.74065 9.02445 9.38791 10.21281 10.46052 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.014041 B = 0.003747 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.627458 B = 7470.410713 C = 9384.212379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.143 4.143 3 C 0.541 3.459 4 O -0.539 6.539 5 N -0.630 5.630 6 C 0.098 3.902 7 C 0.088 3.912 8 N -0.654 5.654 9 C 0.693 3.307 10 O -0.450 6.450 11 N -0.667 5.667 12 C 0.386 3.614 13 C -0.356 4.356 14 C -0.035 4.035 15 C -0.304 4.304 16 C 0.271 3.729 17 C -0.423 4.423 18 H 0.083 0.917 19 C 0.057 3.943 20 N -0.652 5.652 21 Si 0.895 3.105 22 H -0.262 1.262 23 H -0.275 1.275 24 H -0.275 1.275 25 N -0.473 5.473 26 C 0.360 3.640 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.396 0.604 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.271 0.729 41 H 0.075 0.925 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.107 6.743 -0.115 12.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.183 4.183 3 C 0.331 3.669 4 O -0.416 6.416 5 N -0.367 5.367 6 C -0.025 4.025 7 C -0.037 4.037 8 N -0.401 5.401 9 C 0.393 3.607 10 O -0.313 6.313 11 N -0.315 5.315 12 C 0.146 3.854 13 C -0.382 4.382 14 C -0.060 4.060 15 C -0.328 4.328 16 C 0.146 3.854 17 C -0.454 4.454 18 H 0.101 0.899 19 C -0.172 4.172 20 N -0.270 5.270 21 Si 0.719 3.281 22 H -0.186 1.186 23 H -0.201 1.201 24 H -0.201 1.201 25 N -0.192 5.192 26 C 0.150 3.850 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.096 0.904 33 H 0.111 0.889 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.229 0.771 37 H 0.109 0.891 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.427 5.625 -0.590 13.654 hybrid contribution 0.859 0.471 0.239 1.008 sum -11.568 6.097 -0.351 13.081 Atomic orbital electron populations 1.21537 0.92812 1.01785 1.03238 1.21681 0.98596 0.93013 1.05010 1.20416 0.79229 0.92220 0.75065 1.90707 1.53765 1.46902 1.50194 1.48731 1.05379 1.08457 1.74112 1.22460 0.92144 0.86405 1.01487 1.22390 0.96337 0.84632 1.00318 1.47877 1.07973 1.09975 1.74273 1.15741 0.78331 0.85747 0.80881 1.91425 1.79991 1.10402 1.49478 1.42483 1.05584 1.14862 1.68575 1.18296 0.81793 0.91425 0.93868 1.20413 0.92895 0.98625 1.26282 1.20552 0.95047 0.94561 0.95790 1.21633 0.98850 0.94884 1.17394 1.18379 0.85530 0.93285 0.88188 1.19623 0.94507 0.92313 1.38952 0.89881 1.26187 0.95580 0.99809 0.95621 1.70343 0.97895 1.34905 1.23893 0.86472 0.79524 0.83470 0.78589 1.18596 1.20069 1.20071 1.68647 1.24540 1.05180 1.20790 1.20946 0.76488 0.87197 1.00380 0.91999 0.91840 0.92023 0.88442 0.88471 0.90404 0.88904 0.91148 0.89740 0.77054 0.89112 0.88527 0.88502 0.91701 0.90755 0.90601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.20 37.16 0.34 -0.81 16 2 C -0.14 -1.28 5.56 -27.88 -0.16 -1.43 16 3 C 0.54 6.48 7.88 -10.98 -0.09 6.39 16 4 O -0.54 -8.07 16.29 5.56 0.09 -7.98 16 5 N -0.63 -7.28 3.34 -175.19 -0.58 -7.86 16 6 C 0.10 0.99 7.15 -2.77 -0.02 0.97 16 7 C 0.09 0.91 6.61 -2.94 -0.02 0.89 16 8 N -0.65 -9.56 3.35 -181.22 -0.61 -10.16 16 9 C 0.69 13.72 8.46 -86.92 -0.74 12.98 16 10 O -0.45 -11.05 12.46 5.30 0.07 -10.98 16 11 N -0.67 -12.83 5.34 -15.79 -0.08 -12.91 16 12 C 0.39 9.19 7.43 -155.00 -1.15 8.04 16 13 C -0.36 -7.78 9.95 -38.89 -0.39 -8.17 16 14 C -0.04 -0.78 10.15 -39.39 -0.40 -1.18 16 15 C -0.30 -7.52 9.83 -38.66 -0.38 -7.90 16 16 C 0.27 7.49 6.55 -85.00 -0.56 6.94 16 17 C -0.42 -11.46 9.14 -37.74 -0.34 -11.80 16 18 H 0.08 2.11 7.85 -52.49 -0.41 1.70 16 19 C 0.06 1.48 5.50 -17.34 -0.10 1.39 16 20 N -0.65 -17.68 8.98 55.55 0.50 -17.18 16 21 Si 0.89 18.88 29.56 -169.99 -5.02 13.86 16 22 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 23 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 24 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 25 N -0.47 -13.04 5.74 -10.26 -0.06 -13.10 16 26 C 0.36 4.61 6.77 -62.93 -0.43 4.18 16 27 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 30 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.10 0.77 7.97 -51.92 -0.41 0.36 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.09 0.88 8.03 -51.93 -0.42 0.47 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.75 7.72 -51.93 -0.40 0.35 16 36 H 0.40 5.90 7.46 -40.82 -0.30 5.60 16 37 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 38 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 39 H 0.10 2.22 8.06 -52.48 -0.42 1.80 16 40 H 0.27 6.85 8.29 -40.82 -0.34 6.52 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.08 0.97 7.75 -51.93 -0.40 0.56 16 LS Contribution 352.72 15.07 5.32 5.32 Total: -1.00 -34.00 352.72 -10.51 -44.52 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -5.71 Total: 6.02 kcal Atomic # 6 Polarization: 14.88 SS G_CDS: -4.42 Total: 10.47 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: -0.84 Total: -61.21 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: 0.16 Total: -18.96 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.02 Total: 13.86 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.00 -10.51 -44.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881144072.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.536 kcal (2) G-P(sol) polarization free energy of solvation -34.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds