Wall clock time and date at job start Tue Mar 31 2020 13:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47293 * 2 1 4 4 C 1.50706 * 109.47398 * 119.99426 * 2 1 3 5 5 N 1.29945 * 126.28358 * 60.02053 * 4 2 1 6 6 O 1.21304 * 110.24804 * 179.68576 * 5 4 2 7 7 C 1.33639 * 109.81073 * 0.47284 * 6 5 4 8 8 C 1.50706 * 126.55145 * 179.79690 * 7 6 5 9 9 C 1.52999 * 109.46953 * 269.69084 * 8 7 6 10 10 C 1.53006 * 109.46623 * 179.97438 * 9 8 7 11 11 C 1.52999 * 109.46626 * 179.97438 * 10 9 8 12 12 C 1.50706 * 109.46957 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99816 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00340 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99773 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00296 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47118 * 89.99310 * 16 14 12 18 18 H 1.48494 * 109.47201 * 209.99478 * 16 14 12 19 19 H 1.48498 * 109.47011 * 329.99452 * 16 14 12 20 20 N 1.31126 * 106.89636 * 359.53922 * 7 6 5 21 21 C 1.50705 * 109.47250 * 239.99285 * 2 1 3 22 22 C 1.38267 * 119.98519 * 120.00121 * 21 2 1 23 23 C 1.38217 * 120.04948 * 180.02562 * 22 21 2 24 24 C 1.38212 * 120.02760 * 359.97438 * 23 22 21 25 25 C 1.38441 * 119.97526 * 0.02562 * 24 23 22 26 26 F 1.35099 * 120.02540 * 180.02562 * 25 24 23 27 27 C 1.38168 * 119.98710 * 299.72913 * 21 2 1 28 28 H 1.09003 * 109.46989 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47356 * 300.00564 * 1 2 3 30 30 H 1.08996 * 109.47300 * 60.00303 * 1 2 3 31 31 H 1.09000 * 109.46974 * 149.68832 * 8 7 6 32 32 H 1.09001 * 109.46547 * 29.68923 * 8 7 6 33 33 H 1.09000 * 109.47486 * 60.00062 * 9 8 7 34 34 H 1.09001 * 109.47362 * 299.99339 * 9 8 7 35 35 H 1.08993 * 109.46955 * 300.00075 * 10 9 8 36 36 H 1.09000 * 109.47050 * 59.99904 * 10 9 8 37 37 H 1.08993 * 109.47839 * 299.99931 * 11 10 9 38 38 H 1.09000 * 109.47160 * 60.00369 * 11 10 9 39 39 H 0.97000 * 120.00540 * 180.02562 * 15 14 12 40 40 H 1.08005 * 119.97133 * 0.02562 * 22 21 2 41 41 H 1.08006 * 119.98582 * 180.02562 * 23 22 21 42 42 H 1.08008 * 120.01499 * 180.02562 * 24 23 22 43 43 H 1.08002 * 120.01927 * 359.97438 * 27 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7103 1.2306 5 7 1.7952 -1.9458 1.5560 6 8 2.3469 -2.2178 2.6016 7 6 2.9998 -1.1462 3.0613 8 6 3.8069 -1.0636 4.3314 9 6 2.9021 -0.6197 5.4826 10 6 3.7215 -0.5364 6.7721 11 6 2.8169 -0.0919 7.9231 12 6 3.6240 -0.0092 9.1932 13 1 4.6768 -0.2493 9.1804 14 6 3.0182 0.3729 10.3713 15 7 1.7362 0.6658 10.3867 16 14 4.0188 0.4760 11.9454 17 1 4.5853 1.8417 12.0832 18 1 3.1432 0.1836 13.1085 19 1 5.1233 -0.5154 11.8957 20 7 2.8086 -0.1821 2.1934 21 6 2.0323 -0.7106 -1.2304 22 6 2.8272 -0.0384 -2.1404 23 6 3.2883 -0.6887 -3.2696 24 6 2.9556 -2.0119 -3.4900 25 6 2.1597 -2.6859 -2.5796 26 9 1.8343 -3.9795 -2.7938 27 6 1.7030 -2.0350 -1.4458 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 4.6129 -0.3411 4.2033 32 1 4.2291 -2.0427 4.5578 33 1 2.0961 -1.3422 5.6107 34 1 2.4799 0.3594 5.2561 35 1 4.1434 -1.5156 6.9983 36 1 4.5277 0.1859 6.6442 37 1 2.3953 0.8874 7.6967 38 1 2.0104 -0.8139 8.0511 39 1 1.3100 0.9350 11.2155 40 1 3.0881 0.9955 -1.9687 41 1 3.9095 -0.1628 -3.9795 42 1 3.3163 -2.5200 -4.3723 43 1 1.0860 -2.5613 -0.7325 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897066489.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:55 Heat of formation + Delta-G solvation = 15.686023 kcal Electronic energy + Delta-G solvation = -24917.495058 eV Core-core repulsion = 21072.369319 eV Total energy + Delta-G solvation = -3845.125739 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -49.20301 -45.61446 -39.82038 -36.56648 -35.99887 -34.39250 -33.04669 -31.72986 -30.97824 -29.90557 -29.33054 -25.82938 -25.47569 -23.94951 -23.08978 -22.87757 -21.96084 -20.34014 -20.18506 -18.13168 -17.63573 -17.59212 -16.66096 -16.42182 -16.22584 -15.91939 -15.21577 -15.16387 -14.69142 -14.48113 -14.35819 -14.16367 -13.79052 -13.29928 -13.04841 -12.96390 -12.49579 -12.41450 -12.29256 -12.16102 -12.08975 -11.71408 -11.64256 -11.62719 -11.20076 -11.08815 -11.00004 -10.66937 -10.59610 -10.54967 -9.96964 -9.72622 -9.39872 -9.32012 -9.09943 -9.05785 -8.35467 -6.00391 -4.02949 0.68378 0.79185 1.13344 2.16050 2.81707 3.08776 3.31692 3.38100 3.41092 3.49900 3.80248 3.92260 4.22492 4.33587 4.45447 4.62572 4.67978 4.71493 4.82931 4.97964 5.02460 5.16054 5.21231 5.26753 5.35540 5.39711 5.49577 5.51879 5.63573 5.72487 5.74883 5.79199 5.86455 5.89160 6.01744 6.05357 6.06780 6.33246 6.47397 6.66360 6.81471 7.08858 7.66796 7.80490 7.99529 8.12669 8.41415 9.04418 9.61249 11.10910 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.031678 B = 0.001901 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.683765 B =14728.282179 C =14846.189273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.043 3.957 3 H 0.114 0.886 4 C 0.173 3.827 5 N -0.384 5.384 6 O 0.076 5.924 7 C 0.200 3.800 8 C -0.031 4.031 9 C -0.115 4.115 10 C -0.108 4.108 11 C 0.020 3.980 12 C -0.521 4.521 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.896 5.896 16 Si 0.892 3.108 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 N -0.484 5.484 21 C -0.055 4.055 22 C -0.117 4.117 23 C -0.091 4.091 24 C -0.153 4.153 25 C 0.098 3.902 26 F -0.139 7.139 27 C -0.136 4.136 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.109 0.891 32 H 0.101 0.899 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.260 0.740 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.116 -2.749 -28.893 29.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.023 3.977 3 H 0.132 0.868 4 C -0.100 4.100 5 N -0.092 5.092 6 O 0.018 5.982 7 C -0.019 4.019 8 C -0.070 4.070 9 C -0.154 4.154 10 C -0.146 4.146 11 C -0.017 4.017 12 C -0.559 4.559 13 H 0.074 0.926 14 C -0.146 4.146 15 N -0.535 5.535 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 N -0.217 5.217 21 C -0.056 4.056 22 C -0.135 4.135 23 C -0.110 4.110 24 C -0.172 4.172 25 C 0.079 3.921 26 F -0.117 7.117 27 C -0.155 4.155 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.127 0.873 32 H 0.119 0.881 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.070 0.930 40 H 0.151 0.849 41 H 0.153 0.847 42 H 0.153 0.847 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.513 -2.883 -29.434 29.579 hybrid contribution 0.476 -0.222 1.050 1.174 sum 0.989 -3.105 -28.384 28.570 Atomic orbital electron populations 1.21881 0.91575 1.03427 1.03254 1.18466 0.96792 0.98349 0.84084 0.86791 1.25475 0.97204 0.88930 0.98422 1.74525 1.17674 1.17561 0.99490 1.85300 1.47808 1.37751 1.27366 1.29145 0.93981 0.80873 0.97936 1.20553 0.96563 1.05199 0.84720 1.21735 0.98238 1.01828 0.93559 1.21635 0.98747 1.00783 0.93455 1.19102 0.94625 0.96570 0.91440 1.21258 0.95740 1.45489 0.93427 0.92629 1.25039 0.94916 0.95477 0.99138 1.69963 1.09954 1.46356 1.27218 0.86596 0.80020 0.78364 0.83033 1.20686 1.21264 1.19869 1.71908 1.17610 1.29151 1.03080 1.19460 0.97375 0.93341 0.95471 1.21157 0.97470 1.00700 0.94210 1.20997 0.98962 0.93626 0.97366 1.21204 1.00058 0.95846 1.00121 1.17683 0.99207 0.79137 0.96100 1.91513 1.91106 1.34347 1.94775 1.21146 1.02098 0.95137 0.97076 0.91576 0.91292 0.90719 0.87267 0.88057 0.91659 0.91469 0.92893 0.92909 0.96577 0.96564 0.93009 0.84862 0.84686 0.84680 0.84090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 8.99 37.15 0.33 -0.87 16 2 C 0.04 0.41 3.04 -92.92 -0.28 0.13 16 3 H 0.11 0.95 7.88 -51.93 -0.41 0.54 16 4 C 0.17 2.24 6.62 -156.38 -1.03 1.20 16 5 N -0.38 -5.33 10.77 30.90 0.33 -5.00 16 6 O 0.08 1.06 11.31 18.11 0.20 1.26 16 7 C 0.20 2.69 7.77 -13.06 -0.10 2.59 16 8 C -0.03 -0.37 5.84 -27.88 -0.16 -0.54 16 9 C -0.11 -1.75 5.20 -26.73 -0.14 -1.89 16 10 C -0.11 -2.03 5.15 -26.73 -0.14 -2.17 16 11 C 0.02 0.49 4.97 -27.88 -0.14 0.35 16 12 C -0.52 -14.47 9.11 -34.44 -0.31 -14.79 16 13 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 14 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -26.79 13.29 55.43 0.74 -26.06 16 16 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 20 N -0.48 -6.83 11.55 -9.87 -0.11 -6.94 16 21 C -0.06 -0.52 4.77 -104.63 -0.50 -1.02 16 22 C -0.12 -0.89 9.67 -39.58 -0.38 -1.27 16 23 C -0.09 -0.62 10.04 -39.60 -0.40 -1.02 16 24 C -0.15 -1.22 10.03 -39.52 -0.40 -1.62 16 25 C 0.10 0.99 7.30 -39.42 -0.29 0.70 16 26 F -0.14 -1.55 17.27 2.25 0.04 -1.51 16 27 C -0.14 -1.42 8.52 -39.52 -0.34 -1.75 16 28 H 0.07 0.60 7.40 -51.93 -0.38 0.22 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.13 0.73 7.94 -52.48 -0.42 0.32 16 41 H 0.14 0.55 8.06 -52.48 -0.42 0.13 16 42 H 0.14 0.81 8.06 -52.48 -0.42 0.38 16 43 H 0.14 1.59 6.70 -52.49 -0.35 1.23 16 LS Contribution 371.02 15.07 5.59 5.59 Total: -1.00 -31.85 371.02 -8.78 -40.63 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -6.18 Total: -3.91 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: -4.37 Total: -20.47 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.96 Total: -38.00 kcal Atomic # 8 Polarization: 1.06 SS G_CDS: 0.20 Total: 1.26 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.85 -8.78 -40.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897066489.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.313 kcal (2) G-P(sol) polarization free energy of solvation -31.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds