Wall clock time and date at job start Tue Mar 31 2020 13:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47293 * 2 1 4 4 C 1.50706 * 109.47398 * 119.99426 * 2 1 3 5 5 N 1.29945 * 126.28358 * 60.02053 * 4 2 1 6 6 O 1.21304 * 110.24804 * 179.68576 * 5 4 2 7 7 C 1.33639 * 109.81073 * 0.47284 * 6 5 4 8 8 C 1.50706 * 126.55145 * 179.79690 * 7 6 5 9 9 C 1.52999 * 109.46953 * 269.69084 * 8 7 6 10 10 C 1.53006 * 109.46623 * 179.97438 * 9 8 7 11 11 C 1.52999 * 109.46626 * 179.97438 * 10 9 8 12 12 C 1.50706 * 109.46957 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99816 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00340 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99773 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00296 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47118 * 89.99310 * 16 14 12 18 18 H 1.48494 * 109.47201 * 209.99478 * 16 14 12 19 19 H 1.48498 * 109.47011 * 329.99452 * 16 14 12 20 20 N 1.31126 * 106.89636 * 359.53922 * 7 6 5 21 21 C 1.50705 * 109.47250 * 239.99285 * 2 1 3 22 22 C 1.38267 * 119.98519 * 120.00121 * 21 2 1 23 23 C 1.38217 * 120.04948 * 180.02562 * 22 21 2 24 24 C 1.38212 * 120.02760 * 359.97438 * 23 22 21 25 25 C 1.38441 * 119.97526 * 0.02562 * 24 23 22 26 26 F 1.35099 * 120.02540 * 180.02562 * 25 24 23 27 27 C 1.38168 * 119.98710 * 299.72913 * 21 2 1 28 28 H 1.09003 * 109.46989 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47356 * 300.00564 * 1 2 3 30 30 H 1.08996 * 109.47300 * 60.00303 * 1 2 3 31 31 H 1.09000 * 109.46974 * 149.68832 * 8 7 6 32 32 H 1.09001 * 109.46547 * 29.68923 * 8 7 6 33 33 H 1.09000 * 109.47486 * 60.00062 * 9 8 7 34 34 H 1.09001 * 109.47362 * 299.99339 * 9 8 7 35 35 H 1.08993 * 109.46955 * 300.00075 * 10 9 8 36 36 H 1.09000 * 109.47050 * 59.99904 * 10 9 8 37 37 H 1.08993 * 109.47839 * 299.99931 * 11 10 9 38 38 H 1.09000 * 109.47160 * 60.00369 * 11 10 9 39 39 H 0.97000 * 120.00540 * 180.02562 * 15 14 12 40 40 H 1.08005 * 119.97133 * 0.02562 * 22 21 2 41 41 H 1.08006 * 119.98582 * 180.02562 * 23 22 21 42 42 H 1.08008 * 120.01499 * 180.02562 * 24 23 22 43 43 H 1.08002 * 120.01927 * 359.97438 * 27 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7103 1.2306 5 7 1.7952 -1.9458 1.5560 6 8 2.3469 -2.2178 2.6016 7 6 2.9998 -1.1462 3.0613 8 6 3.8069 -1.0636 4.3314 9 6 2.9021 -0.6197 5.4826 10 6 3.7215 -0.5364 6.7721 11 6 2.8169 -0.0919 7.9231 12 6 3.6240 -0.0092 9.1932 13 1 4.6768 -0.2493 9.1804 14 6 3.0182 0.3729 10.3713 15 7 1.7362 0.6658 10.3867 16 14 4.0188 0.4760 11.9454 17 1 4.5853 1.8417 12.0832 18 1 3.1432 0.1836 13.1085 19 1 5.1233 -0.5154 11.8957 20 7 2.8086 -0.1821 2.1934 21 6 2.0323 -0.7106 -1.2304 22 6 2.8272 -0.0384 -2.1404 23 6 3.2883 -0.6887 -3.2696 24 6 2.9556 -2.0119 -3.4900 25 6 2.1597 -2.6859 -2.5796 26 9 1.8343 -3.9795 -2.7938 27 6 1.7030 -2.0350 -1.4458 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 4.6129 -0.3411 4.2033 32 1 4.2291 -2.0427 4.5578 33 1 2.0961 -1.3422 5.6107 34 1 2.4799 0.3594 5.2561 35 1 4.1434 -1.5156 6.9983 36 1 4.5277 0.1859 6.6442 37 1 2.3953 0.8874 7.6967 38 1 2.0104 -0.8139 8.0511 39 1 1.3100 0.9350 11.2155 40 1 3.0881 0.9955 -1.9687 41 1 3.9095 -0.1628 -3.9795 42 1 3.3163 -2.5200 -4.3723 43 1 1.0860 -2.5613 -0.7325 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897066489.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:54 Heat of formation + Delta-G solvation = -1.528010 kcal Electronic energy + Delta-G solvation = -24918.241515 eV Core-core repulsion = 21072.369319 eV Total energy + Delta-G solvation = -3845.872196 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.98121 -46.64906 -40.47423 -37.53233 -37.22416 -35.61230 -34.65287 -33.09569 -31.62212 -30.91982 -30.49064 -27.49309 -26.28646 -25.03133 -24.33004 -23.55589 -23.12536 -21.79826 -21.19692 -19.16406 -18.59881 -18.42007 -18.30936 -17.33125 -17.11844 -16.69819 -16.56214 -16.37491 -16.03547 -15.63210 -15.16008 -14.83127 -14.63421 -14.53378 -14.28249 -14.00458 -13.70394 -13.63447 -13.45366 -13.12648 -13.05619 -12.82947 -12.80665 -12.60695 -12.40813 -12.34720 -12.22005 -12.15987 -12.05571 -11.88479 -11.36039 -11.35127 -11.18036 -10.78467 -10.52101 -10.04102 -9.75722 -8.17047 -6.27755 0.00856 0.11093 0.16772 1.15622 1.42664 1.43749 1.54784 1.80786 2.37979 2.43702 2.67529 3.00014 3.15718 3.16484 3.51353 3.67044 3.85275 4.03262 4.04473 4.06431 4.09279 4.20147 4.22991 4.35935 4.42157 4.62849 4.67407 4.74309 4.75496 4.80331 4.87781 4.90802 4.92974 5.03888 5.09407 5.12223 5.18049 5.28607 5.32829 5.34189 5.42334 5.59053 5.82019 5.85226 5.91633 6.28586 6.91063 7.10200 7.41695 8.94797 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.031678 B = 0.001901 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.683765 B =14728.282179 C =14846.189273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.043 3.957 3 H 0.131 0.869 4 C 0.173 3.827 5 N -0.400 5.400 6 O 0.064 5.936 7 C 0.199 3.801 8 C -0.020 4.020 9 C -0.104 4.104 10 C -0.096 4.096 11 C 0.018 3.982 12 C -0.539 4.539 13 H 0.065 0.935 14 C -0.006 4.006 15 N -0.936 5.936 16 Si 0.965 3.035 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.260 1.260 20 N -0.500 5.500 21 C -0.065 4.065 22 C -0.114 4.114 23 C -0.084 4.084 24 C -0.152 4.152 25 C 0.072 3.928 26 F -0.153 7.153 27 C -0.151 4.151 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.097 0.903 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.063 0.937 37 H -0.012 1.012 38 H -0.011 1.011 39 H 0.262 0.738 40 H 0.159 0.841 41 H 0.170 0.830 42 H 0.155 0.845 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.347 -1.955 -30.166 30.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.023 3.977 3 H 0.149 0.851 4 C -0.100 4.100 5 N -0.110 5.110 6 O 0.009 5.991 7 C -0.021 4.021 8 C -0.059 4.059 9 C -0.143 4.143 10 C -0.133 4.133 11 C -0.019 4.019 12 C -0.577 4.577 13 H 0.084 0.916 14 C -0.203 4.203 15 N -0.577 5.577 16 Si 0.789 3.211 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.184 1.184 20 N -0.234 5.234 21 C -0.066 4.066 22 C -0.131 4.131 23 C -0.102 4.102 24 C -0.170 4.170 25 C 0.053 3.947 26 F -0.131 7.131 27 C -0.170 4.170 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.116 0.884 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.006 0.994 38 H 0.007 0.993 39 H 0.071 0.929 40 H 0.177 0.823 41 H 0.188 0.812 42 H 0.173 0.827 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.759 -2.103 -30.709 30.904 hybrid contribution -0.252 -0.440 1.396 1.485 sum 2.507 -2.543 -29.313 29.529 Atomic orbital electron populations 1.21863 0.90984 1.02835 1.04067 1.18677 0.97304 0.98783 0.82966 0.85110 1.26098 0.96321 0.88673 0.98937 1.74545 1.18351 1.18378 0.99758 1.85282 1.48087 1.38120 1.27603 1.29374 0.93737 0.80719 0.98232 1.20499 0.95717 1.07076 0.82608 1.21499 0.98200 1.01205 0.93428 1.21419 0.97963 1.01411 0.92519 1.19060 0.94831 0.94474 0.93521 1.21769 0.96461 1.44937 0.94575 0.91644 1.26028 0.96031 0.95124 1.03128 1.70108 1.11866 1.47502 1.28233 0.85448 0.78549 0.78842 0.78224 1.19865 1.21134 1.18439 1.71922 1.18246 1.29535 1.03651 1.19488 0.98298 0.92960 0.95873 1.21510 0.96134 1.01800 0.93704 1.21417 0.98285 0.93035 0.97446 1.21515 0.98987 0.96455 1.00063 1.17977 1.00730 0.78954 0.97048 1.91470 1.91446 1.35319 1.94908 1.21090 1.02809 0.95912 0.97232 0.92895 0.91850 0.88443 0.85549 0.85497 0.92349 0.92710 0.91594 0.91847 0.99393 0.99270 0.92945 0.82338 0.81240 0.82744 0.85980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 8.99 71.98 0.65 -1.64 16 2 C 0.04 0.78 3.04 -12.28 -0.04 0.74 16 3 H 0.13 1.91 7.88 -2.39 -0.02 1.89 16 4 C 0.17 4.42 6.62 138.47 0.92 5.34 16 5 N -0.40 -11.30 10.77 -60.32 -0.65 -11.95 16 6 O 0.06 1.80 11.31 74.87 0.85 2.65 16 7 C 0.20 5.18 7.77 88.38 0.69 5.87 16 8 C -0.02 -0.45 5.84 29.85 0.17 -0.28 16 9 C -0.10 -3.13 5.20 30.60 0.16 -2.98 16 10 C -0.10 -3.50 5.15 30.60 0.16 -3.34 16 11 C 0.02 0.94 4.97 29.85 0.15 1.08 16 12 C -0.54 -30.05 9.11 25.60 0.23 -29.82 16 13 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 14 C -0.01 -0.34 5.46 84.65 0.46 0.13 16 15 N -0.94 -57.21 13.29 21.45 0.28 -56.93 16 16 Si 0.96 43.85 29.54 68.60 2.03 45.88 16 17 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 18 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 19 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 20 N -0.50 -13.70 11.55 -303.20 -3.50 -17.20 16 21 C -0.07 -1.15 4.77 -19.87 -0.09 -1.24 16 22 C -0.11 -1.40 9.67 22.27 0.22 -1.19 16 23 C -0.08 -0.87 10.04 22.26 0.22 -0.65 16 24 C -0.15 -2.13 10.03 22.31 0.22 -1.90 16 25 C 0.07 1.45 7.30 22.38 0.16 1.62 16 26 F -0.15 -3.54 17.27 44.97 0.78 -2.76 16 27 C -0.15 -3.22 8.52 22.31 0.19 -3.03 16 28 H 0.05 1.00 7.40 -2.39 -0.02 0.98 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.10 1.12 8.14 -2.39 -0.02 1.11 16 31 H 0.13 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 37 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 38 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 39 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 40 H 0.16 1.12 7.94 -2.91 -0.02 1.10 16 41 H 0.17 0.59 8.06 -2.91 -0.02 0.56 16 42 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 43 H 0.12 2.97 6.70 -2.91 -0.02 2.95 16 Total: -1.00 -70.77 371.02 5.26 -65.51 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: 1.01 Total: 6.08 kcal Atomic # 6 Polarization: -35.75 SS G_CDS: 4.47 Total: -31.28 kcal Atomic # 7 Polarization: -82.21 SS G_CDS: -3.87 Total: -86.08 kcal Atomic # 8 Polarization: 1.80 SS G_CDS: 0.85 Total: 2.65 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.78 Total: -2.76 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -70.77 5.26 -65.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897066489.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.986 kcal (2) G-P(sol) polarization free energy of solvation -70.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds