Wall clock time and date at job start Tue Mar 31 2020 13:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47270 * 2 1 4 4 C 1.50699 * 109.47249 * 239.99739 * 2 1 3 5 5 N 1.29955 * 126.28534 * 299.97521 * 4 2 1 6 6 O 1.21304 * 110.24536 * 179.97438 * 5 4 2 7 7 C 1.33640 * 109.81361 * 0.02562 * 6 5 4 8 8 C 1.50706 * 126.55033 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.46953 * 270.02715 * 8 7 6 10 10 C 1.53006 * 109.46623 * 179.97438 * 9 8 7 11 11 C 1.52999 * 109.46626 * 179.97438 * 10 9 8 12 12 C 1.50706 * 109.46957 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99816 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00340 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99773 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00296 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47086 * 59.99480 * 16 14 12 18 18 H 1.48494 * 109.47288 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46879 * 299.99424 * 16 14 12 20 20 N 1.31130 * 106.90009 * 0.22679 * 7 6 5 21 21 C 1.50706 * 109.46870 * 120.00092 * 2 1 3 22 22 C 1.38266 * 119.98981 * 59.72349 * 21 2 1 23 23 C 1.38223 * 120.04800 * 179.72368 * 22 21 2 24 24 C 1.38212 * 120.02895 * 0.55424 * 23 22 21 25 25 C 1.38445 * 119.97330 * 359.72280 * 24 23 22 26 26 F 1.35099 * 120.02549 * 180.02562 * 25 24 23 27 27 C 1.38184 * 119.98383 * 239.99991 * 21 2 1 28 28 H 1.09004 * 109.47206 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47289 * 300.00366 * 1 2 3 30 30 H 1.08995 * 109.47079 * 60.00272 * 1 2 3 31 31 H 1.09000 * 109.46974 * 150.02463 * 8 7 6 32 32 H 1.09001 * 109.46547 * 30.02554 * 8 7 6 33 33 H 1.09000 * 109.47486 * 60.00062 * 9 8 7 34 34 H 1.09001 * 109.47362 * 299.99339 * 9 8 7 35 35 H 1.08993 * 109.46955 * 300.00075 * 10 9 8 36 36 H 1.09000 * 109.47050 * 59.99904 * 10 9 8 37 37 H 1.08993 * 109.47839 * 299.99931 * 11 10 9 38 38 H 1.09000 * 109.47160 * 60.00369 * 11 10 9 39 39 H 0.97000 * 120.00540 * 180.02562 * 15 14 12 40 40 H 1.07996 * 119.97038 * 359.97438 * 22 21 2 41 41 H 1.08003 * 119.98687 * 180.27230 * 23 22 21 42 42 H 1.07998 * 120.01835 * 179.69995 * 24 23 22 43 43 H 1.07994 * 120.00970 * 0.02562 * 27 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 7 1.7953 -1.9461 -1.5557 6 8 2.3414 -2.2162 -2.6046 7 6 2.9990 -1.1463 -3.0616 8 6 3.8057 -1.0637 -4.3319 9 6 5.2566 -1.4525 -4.0407 10 6 6.0755 -1.3692 -5.3305 11 6 7.5264 -1.7573 -5.0392 12 6 8.3332 -1.6747 -6.3095 13 1 7.8585 -1.3749 -7.2321 14 6 9.6772 -1.9818 -6.2938 15 7 10.2553 -2.3464 -5.1702 16 14 10.6774 -1.8787 -7.8682 17 1 10.6327 -0.4903 -8.3930 18 1 12.0856 -2.2555 -7.5856 19 1 10.1089 -2.8080 -8.8774 20 7 2.8127 -0.1837 -2.1909 21 6 2.0323 -0.7105 1.2305 22 6 1.6934 -2.0325 1.4520 23 6 2.1581 -2.6870 2.5773 24 6 2.9527 -2.0171 3.4883 25 6 3.2880 -0.6916 3.2705 26 9 4.0652 -0.0360 4.1601 27 6 2.8267 -0.0386 2.1399 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.7729 -0.0447 -4.7175 32 1 3.3883 -1.7461 -5.0723 33 1 5.2894 -2.4714 -3.6551 34 1 5.6740 -0.7701 -3.3003 35 1 5.6579 -2.0517 -6.0706 36 1 6.0427 -0.3504 -5.7166 37 1 7.9438 -1.0745 -4.2993 38 1 7.5595 -2.7761 -4.6530 39 1 11.2010 -2.5621 -5.1590 40 1 1.0684 -2.5553 0.7431 41 1 1.8963 -3.7210 2.7470 42 1 3.3117 -2.5272 4.3699 43 1 3.0872 0.9954 1.9692 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897066490.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:59 Heat of formation + Delta-G solvation = 15.833265 kcal Electronic energy + Delta-G solvation = -25027.983640 eV Core-core repulsion = 21182.864286 eV Total energy + Delta-G solvation = -3845.119354 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.15333 -45.61611 -39.76605 -36.54588 -35.98926 -34.36999 -33.04504 -31.77590 -30.99466 -29.73941 -29.33510 -25.82808 -25.47201 -23.84705 -23.15639 -22.89925 -21.91181 -20.32977 -20.17101 -18.07262 -17.74682 -17.41042 -16.61057 -16.38259 -16.21882 -15.86965 -15.24485 -15.13818 -14.77261 -14.56741 -14.31562 -13.98208 -13.72783 -13.28428 -13.03698 -12.99464 -12.52426 -12.40222 -12.27904 -12.08416 -12.02132 -11.80689 -11.68568 -11.48815 -11.19881 -11.07508 -10.99916 -10.65591 -10.60621 -10.55945 -9.96854 -9.72011 -9.37317 -9.31500 -9.06580 -8.99257 -8.34628 -5.99589 -4.02390 0.75146 0.86219 1.12684 2.15903 2.81082 3.14662 3.33413 3.38100 3.40111 3.49218 3.82850 3.98440 4.26445 4.38567 4.45941 4.68385 4.68958 4.73413 4.86503 5.01850 5.04069 5.15074 5.20985 5.25614 5.36176 5.41781 5.48587 5.51200 5.68124 5.74186 5.76829 5.77942 5.88194 5.97764 6.02701 6.05553 6.12270 6.33539 6.54175 6.66639 6.81814 7.09282 7.67176 7.81145 8.00192 8.11957 8.41911 9.04826 9.61776 11.11717 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.014594 B = 0.002319 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.120766 B =12069.478294 C =13322.902634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.043 3.957 3 H 0.112 0.888 4 C 0.174 3.826 5 N -0.384 5.384 6 O 0.075 5.925 7 C 0.201 3.799 8 C -0.031 4.031 9 C -0.116 4.116 10 C -0.108 4.108 11 C 0.020 3.980 12 C -0.522 4.522 13 H 0.055 0.945 14 C 0.056 3.944 15 N -0.896 5.896 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 N -0.485 5.485 21 C -0.057 4.057 22 C -0.111 4.111 23 C -0.090 4.090 24 C -0.151 4.151 25 C 0.098 3.902 26 F -0.139 7.139 27 C -0.141 4.141 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.101 0.899 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.261 0.739 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.198 2.829 14.661 26.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.023 3.977 3 H 0.130 0.870 4 C -0.099 4.099 5 N -0.092 5.092 6 O 0.017 5.983 7 C -0.019 4.019 8 C -0.070 4.070 9 C -0.154 4.154 10 C -0.146 4.146 11 C -0.017 4.017 12 C -0.560 4.560 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.535 5.535 16 Si 0.720 3.280 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 N -0.218 5.218 21 C -0.058 4.058 22 C -0.130 4.130 23 C -0.108 4.108 24 C -0.170 4.170 25 C 0.079 3.921 26 F -0.117 7.117 27 C -0.159 4.159 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.128 0.872 32 H 0.120 0.880 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.071 0.929 40 H 0.153 0.847 41 H 0.153 0.847 42 H 0.154 0.846 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -22.442 2.674 15.423 27.362 hybrid contribution 1.021 0.085 -0.745 1.267 sum -21.421 2.759 14.678 26.114 Atomic orbital electron populations 1.21860 0.91606 1.03368 1.03049 1.18438 0.96658 0.98393 0.84221 0.87018 1.25459 0.97119 0.88870 0.98455 1.74512 1.18090 1.17210 0.99402 1.85293 1.47909 1.37935 1.27146 1.29144 0.93351 0.80853 0.98556 1.20553 0.94094 1.05547 0.86824 1.21740 0.90657 1.01932 1.01094 1.21632 0.98118 1.00806 0.94026 1.19095 0.88873 0.96759 0.96967 1.21222 0.93999 1.45686 0.95130 0.92680 1.25033 0.98013 0.95328 0.96120 1.69953 1.11499 1.46224 1.25826 0.86661 0.79128 0.78511 0.83718 1.20236 1.21324 1.20230 1.71920 1.17140 1.29595 1.03126 1.19419 0.97204 0.94405 0.94813 1.21217 1.00102 0.93967 0.97673 1.21025 0.96279 1.00113 0.93388 1.21215 1.00971 0.93186 1.01653 1.17633 0.94312 0.91204 0.88992 1.91514 1.72426 1.81044 1.66742 1.21038 0.99662 1.01386 0.93860 0.91487 0.90766 0.91558 0.87250 0.88031 0.91678 0.91495 0.92892 0.92909 0.96590 0.96586 0.92937 0.84713 0.84748 0.84618 0.84362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 8.98 37.16 0.33 -0.72 16 2 C 0.04 0.42 3.04 -92.92 -0.28 0.13 16 3 H 0.11 0.98 7.87 -51.93 -0.41 0.57 16 4 C 0.17 2.22 6.62 -156.37 -1.03 1.18 16 5 N -0.38 -5.10 10.81 30.90 0.33 -4.76 16 6 O 0.07 1.01 11.31 18.11 0.20 1.22 16 7 C 0.20 2.66 7.77 -13.05 -0.10 2.56 16 8 C -0.03 -0.37 5.84 -27.88 -0.16 -0.53 16 9 C -0.12 -1.78 5.20 -26.73 -0.14 -1.92 16 10 C -0.11 -2.03 5.15 -26.73 -0.14 -2.17 16 11 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 12 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 13 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -26.96 13.29 55.43 0.74 -26.23 16 16 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 20 N -0.48 -6.84 11.55 -9.86 -0.11 -6.95 16 21 C -0.06 -0.58 4.77 -104.63 -0.50 -1.08 16 22 C -0.11 -1.09 8.54 -39.58 -0.34 -1.42 16 23 C -0.09 -0.78 10.04 -39.60 -0.40 -1.18 16 24 C -0.15 -1.38 10.03 -39.51 -0.40 -1.78 16 25 C 0.10 1.03 7.30 -39.42 -0.29 0.74 16 26 F -0.14 -1.57 17.27 2.25 0.04 -1.53 16 27 C -0.14 -1.41 9.65 -39.51 -0.38 -1.79 16 28 H 0.07 0.52 7.37 -51.93 -0.38 0.14 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.14 1.29 6.71 -52.49 -0.35 0.94 16 41 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 42 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 43 H 0.14 1.18 7.94 -52.49 -0.42 0.77 16 LS Contribution 371.04 15.07 5.59 5.59 Total: -1.00 -31.84 371.04 -8.78 -40.62 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -6.18 Total: -3.45 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: -4.37 Total: -20.99 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.96 Total: -37.94 kcal Atomic # 8 Polarization: 1.01 SS G_CDS: 0.20 Total: 1.22 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.84 -8.78 -40.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897066490.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.450 kcal (2) G-P(sol) polarization free energy of solvation -31.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds