Wall clock time and date at job start Tue Mar 31 2020 13:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47270 * 2 1 4 4 C 1.50699 * 109.47249 * 239.99739 * 2 1 3 5 5 N 1.29955 * 126.28534 * 299.97521 * 4 2 1 6 6 O 1.21304 * 110.24536 * 179.97438 * 5 4 2 7 7 C 1.33640 * 109.81361 * 0.02562 * 6 5 4 8 8 C 1.50706 * 126.55033 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.46953 * 270.02715 * 8 7 6 10 10 C 1.53006 * 109.46623 * 179.97438 * 9 8 7 11 11 C 1.52999 * 109.46626 * 179.97438 * 10 9 8 12 12 C 1.50706 * 109.46957 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99816 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00340 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99773 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00296 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47086 * 59.99480 * 16 14 12 18 18 H 1.48494 * 109.47288 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46879 * 299.99424 * 16 14 12 20 20 N 1.31130 * 106.90009 * 0.22679 * 7 6 5 21 21 C 1.50706 * 109.46870 * 120.00092 * 2 1 3 22 22 C 1.38266 * 119.98981 * 59.72349 * 21 2 1 23 23 C 1.38223 * 120.04800 * 179.72368 * 22 21 2 24 24 C 1.38212 * 120.02895 * 0.55424 * 23 22 21 25 25 C 1.38445 * 119.97330 * 359.72280 * 24 23 22 26 26 F 1.35099 * 120.02549 * 180.02562 * 25 24 23 27 27 C 1.38184 * 119.98383 * 239.99991 * 21 2 1 28 28 H 1.09004 * 109.47206 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47289 * 300.00366 * 1 2 3 30 30 H 1.08995 * 109.47079 * 60.00272 * 1 2 3 31 31 H 1.09000 * 109.46974 * 150.02463 * 8 7 6 32 32 H 1.09001 * 109.46547 * 30.02554 * 8 7 6 33 33 H 1.09000 * 109.47486 * 60.00062 * 9 8 7 34 34 H 1.09001 * 109.47362 * 299.99339 * 9 8 7 35 35 H 1.08993 * 109.46955 * 300.00075 * 10 9 8 36 36 H 1.09000 * 109.47050 * 59.99904 * 10 9 8 37 37 H 1.08993 * 109.47839 * 299.99931 * 11 10 9 38 38 H 1.09000 * 109.47160 * 60.00369 * 11 10 9 39 39 H 0.97000 * 120.00540 * 180.02562 * 15 14 12 40 40 H 1.07996 * 119.97038 * 359.97438 * 22 21 2 41 41 H 1.08003 * 119.98687 * 180.27230 * 23 22 21 42 42 H 1.07998 * 120.01835 * 179.69995 * 24 23 22 43 43 H 1.07994 * 120.00970 * 0.02562 * 27 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 7 1.7953 -1.9461 -1.5557 6 8 2.3414 -2.2162 -2.6046 7 6 2.9990 -1.1463 -3.0616 8 6 3.8057 -1.0637 -4.3319 9 6 5.2566 -1.4525 -4.0407 10 6 6.0755 -1.3692 -5.3305 11 6 7.5264 -1.7573 -5.0392 12 6 8.3332 -1.6747 -6.3095 13 1 7.8585 -1.3749 -7.2321 14 6 9.6772 -1.9818 -6.2938 15 7 10.2553 -2.3464 -5.1702 16 14 10.6774 -1.8787 -7.8682 17 1 10.6327 -0.4903 -8.3930 18 1 12.0856 -2.2555 -7.5856 19 1 10.1089 -2.8080 -8.8774 20 7 2.8127 -0.1837 -2.1909 21 6 2.0323 -0.7105 1.2305 22 6 1.6934 -2.0325 1.4520 23 6 2.1581 -2.6870 2.5773 24 6 2.9527 -2.0171 3.4883 25 6 3.2880 -0.6916 3.2705 26 9 4.0652 -0.0360 4.1601 27 6 2.8267 -0.0386 2.1399 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.7729 -0.0447 -4.7175 32 1 3.3883 -1.7461 -5.0723 33 1 5.2894 -2.4714 -3.6551 34 1 5.6740 -0.7701 -3.3003 35 1 5.6579 -2.0517 -6.0706 36 1 6.0427 -0.3504 -5.7166 37 1 7.9438 -1.0745 -4.2993 38 1 7.5595 -2.7761 -4.6530 39 1 11.2010 -2.5621 -5.1590 40 1 1.0684 -2.5553 0.7431 41 1 1.8963 -3.7210 2.7470 42 1 3.3117 -2.5272 4.3699 43 1 3.0872 0.9954 1.9692 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897066490.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:58 Heat of formation + Delta-G solvation = -1.138907 kcal Electronic energy + Delta-G solvation = -25028.719609 eV Core-core repulsion = 21182.864286 eV Total energy + Delta-G solvation = -3845.855323 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.97719 -46.62192 -40.49855 -37.52102 -37.21529 -35.60012 -34.64919 -33.11158 -31.77328 -30.85220 -30.41725 -27.48951 -26.25497 -24.99490 -24.24431 -23.80891 -23.06538 -21.80088 -21.19188 -19.10100 -18.67326 -18.37083 -18.21893 -17.39727 -17.13994 -16.69096 -16.56385 -16.37702 -16.03800 -15.61873 -15.35541 -14.66459 -14.63624 -14.49429 -14.30050 -14.00863 -13.69375 -13.64825 -13.48324 -13.13573 -13.08018 -12.83913 -12.75871 -12.62873 -12.40621 -12.29083 -12.25240 -12.15036 -12.03973 -11.90067 -11.35755 -11.35258 -11.18998 -10.76924 -10.51869 -10.08977 -9.76015 -8.17177 -6.28257 -0.01303 0.11751 0.13970 1.16891 1.42411 1.45414 1.53108 1.81511 2.36216 2.43588 2.66048 2.99005 3.15478 3.16350 3.52073 3.65339 3.86259 4.01506 4.04237 4.05016 4.08940 4.15675 4.22525 4.33466 4.42271 4.63454 4.67338 4.76351 4.79973 4.80563 4.84806 4.90817 4.94411 4.99630 5.05087 5.14105 5.18147 5.27659 5.32405 5.34035 5.39751 5.58472 5.81452 5.81833 5.91174 6.28064 6.90589 7.11346 7.41402 8.94603 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.014594 B = 0.002319 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.120766 B =12069.478294 C =13322.902634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.042 3.958 3 H 0.119 0.881 4 C 0.173 3.827 5 N -0.391 5.391 6 O 0.067 5.933 7 C 0.200 3.800 8 C -0.020 4.020 9 C -0.106 4.106 10 C -0.095 4.095 11 C 0.019 3.981 12 C -0.541 4.541 13 H 0.066 0.934 14 C -0.005 4.005 15 N -0.938 5.938 16 Si 0.965 3.035 17 H -0.266 1.266 18 H -0.287 1.287 19 H -0.264 1.264 20 N -0.505 5.505 21 C -0.065 4.065 22 C -0.119 4.119 23 C -0.090 4.090 24 C -0.153 4.153 25 C 0.078 3.922 26 F -0.148 7.148 27 C -0.149 4.149 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.068 0.932 31 H 0.125 0.875 32 H 0.130 0.870 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.068 0.932 36 H 0.062 0.938 37 H -0.015 1.015 38 H -0.011 1.011 39 H 0.262 0.738 40 H 0.135 0.865 41 H 0.159 0.841 42 H 0.154 0.846 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.496 2.966 13.611 27.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.022 3.978 3 H 0.137 0.863 4 C -0.100 4.100 5 N -0.101 5.101 6 O 0.012 5.988 7 C -0.019 4.019 8 C -0.059 4.059 9 C -0.144 4.144 10 C -0.133 4.133 11 C -0.018 4.018 12 C -0.579 4.579 13 H 0.084 0.916 14 C -0.202 4.202 15 N -0.578 5.578 16 Si 0.789 3.211 17 H -0.191 1.191 18 H -0.213 1.213 19 H -0.189 1.189 20 N -0.239 5.239 21 C -0.066 4.066 22 C -0.137 4.137 23 C -0.108 4.108 24 C -0.171 4.171 25 C 0.059 3.941 26 F -0.126 7.126 27 C -0.167 4.167 28 H 0.082 0.918 29 H 0.110 0.890 30 H 0.087 0.913 31 H 0.144 0.856 32 H 0.148 0.852 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.004 0.996 38 H 0.007 0.993 39 H 0.071 0.929 40 H 0.153 0.847 41 H 0.177 0.823 42 H 0.172 0.828 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -23.759 2.811 14.358 27.903 hybrid contribution 1.425 0.023 -0.356 1.469 sum -22.334 2.833 14.002 26.512 Atomic orbital electron populations 1.21841 0.89888 1.03456 1.04065 1.18621 0.98022 0.98293 0.82880 0.86330 1.25985 0.96386 0.88768 0.98881 1.74507 1.18592 1.17550 0.99466 1.85277 1.48140 1.38077 1.27348 1.29321 0.93285 0.80686 0.98644 1.20494 0.91264 1.07257 0.86865 1.21505 0.92740 1.01326 0.98875 1.21416 0.94373 1.01485 0.95985 1.19052 0.92950 0.94504 0.95331 1.21750 0.94705 1.45115 0.96334 0.91569 1.26027 0.99544 0.94918 0.99724 1.70105 1.11853 1.47485 1.28368 0.85507 0.77136 0.79127 0.79334 1.19070 1.21278 1.18910 1.71934 1.17802 1.30349 1.03809 1.19493 0.97468 0.94711 0.94943 1.21354 1.00238 0.94005 0.98105 1.21326 0.95548 1.01200 0.92688 1.21482 1.00576 0.92739 1.02331 1.17896 0.94965 0.91976 0.89300 1.91487 1.72780 1.81316 1.67052 1.21186 0.99674 1.01990 0.93883 0.91840 0.88954 0.91305 0.85646 0.85151 0.92311 0.93125 0.91368 0.91924 0.99631 0.99274 0.92931 0.84707 0.82305 0.82814 0.83520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 8.98 71.98 0.65 -1.18 16 2 C 0.04 0.77 3.04 -12.29 -0.04 0.73 16 3 H 0.12 1.98 7.87 -2.39 -0.02 1.96 16 4 C 0.17 4.27 6.62 138.46 0.92 5.18 16 5 N -0.39 -10.08 10.81 -60.29 -0.65 -10.73 16 6 O 0.07 1.75 11.31 74.85 0.85 2.60 16 7 C 0.20 5.05 7.77 88.38 0.69 5.74 16 8 C -0.02 -0.44 5.84 29.85 0.17 -0.26 16 9 C -0.11 -3.19 5.20 30.60 0.16 -3.03 16 10 C -0.10 -3.48 5.15 30.60 0.16 -3.33 16 11 C 0.02 0.97 4.97 29.85 0.15 1.11 16 12 C -0.54 -30.24 9.11 25.60 0.23 -30.00 16 13 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 14 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 15 N -0.94 -57.62 13.29 21.45 0.28 -57.34 16 16 Si 0.96 43.90 29.54 68.60 2.03 45.92 16 17 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 18 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 19 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 20 N -0.51 -13.80 11.55 -303.17 -3.50 -17.30 16 21 C -0.07 -1.26 4.77 -19.87 -0.09 -1.36 16 22 C -0.12 -2.20 8.54 22.27 0.19 -2.01 16 23 C -0.09 -1.43 10.04 22.26 0.22 -1.21 16 24 C -0.15 -2.63 10.03 22.31 0.22 -2.41 16 25 C 0.08 1.61 7.30 22.38 0.16 1.77 16 26 F -0.15 -3.34 17.27 44.97 0.78 -2.57 16 27 C -0.15 -2.93 9.65 22.31 0.22 -2.72 16 28 H 0.06 0.91 7.37 -2.39 -0.02 0.89 16 29 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.06 2.17 8.14 -2.39 -0.02 2.16 16 37 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 38 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 39 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 40 H 0.14 2.47 6.71 -2.91 -0.02 2.45 16 41 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 42 H 0.15 1.99 8.06 -2.91 -0.02 1.96 16 43 H 0.15 2.49 7.94 -2.91 -0.02 2.47 16 Total: -1.00 -69.41 371.04 5.26 -64.15 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: 1.01 Total: 8.04 kcal Atomic # 6 Polarization: -37.26 SS G_CDS: 4.47 Total: -32.79 kcal Atomic # 7 Polarization: -81.49 SS G_CDS: -3.87 Total: -85.36 kcal Atomic # 8 Polarization: 1.75 SS G_CDS: 0.85 Total: 2.60 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.78 Total: -2.57 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -69.41 5.26 -64.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897066490.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.011 kcal (2) G-P(sol) polarization free energy of solvation -69.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds