Wall clock time and date at job start Tue Mar 31 2020 14:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47193 * 2 1 4 4 C 1.34773 * 119.99684 * 274.15060 * 3 2 1 5 5 O 1.21275 * 120.00421 * 4.95884 * 4 3 2 6 6 C 1.50700 * 119.99805 * 184.95309 * 4 3 2 7 7 H 1.09002 * 112.82817 * 322.44003 * 6 4 3 8 8 C 1.53520 * 113.58614 * 191.32986 * 6 4 3 9 9 C 1.51623 * 87.24906 * 245.40659 * 8 6 4 10 10 C 1.38389 * 147.49136 * 180.02562 * 9 8 6 11 11 C 1.38053 * 120.35877 * 180.02562 * 10 9 8 12 12 C 1.38474 * 119.92739 * 359.97438 * 11 10 9 13 13 F 1.35107 * 120.04661 * 180.02562 * 12 11 10 14 14 C 1.38316 * 119.90348 * 0.02562 * 12 11 10 15 15 C 1.38335 * 120.30445 * 0.02562 * 14 12 11 16 16 C 1.46504 * 119.99909 * 94.15529 * 3 2 1 17 17 C 1.53491 * 114.20619 * 299.99631 * 16 3 2 18 18 N 1.47075 * 87.98247 * 87.52082 * 17 16 3 19 19 C 1.36937 * 136.05617 * 207.07753 * 18 17 16 20 20 H 1.08001 * 119.99789 * 359.73218 * 19 18 17 21 21 C 1.38809 * 119.99907 * 180.02562 * 19 18 17 22 22 N 1.31618 * 119.99998 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00092 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47039 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47061 * 120.00361 * 23 21 19 26 26 H 1.48503 * 109.47264 * 240.00520 * 23 21 19 27 27 C 1.47065 * 87.88184 * 27.34186 * 18 17 16 28 28 H 1.08998 * 109.47571 * 294.26950 * 1 2 3 29 29 H 1.09001 * 109.46584 * 54.26807 * 1 2 3 30 30 H 1.09002 * 109.47173 * 174.26122 * 1 2 3 31 31 H 1.09000 * 109.47343 * 239.99386 * 2 1 3 32 32 H 1.08998 * 109.46755 * 119.99780 * 2 1 3 33 33 H 1.08994 * 113.58892 * 359.97438 * 8 6 4 34 34 H 1.09007 * 113.58730 * 130.73872 * 8 6 4 35 35 H 1.07998 * 119.82253 * 359.95972 * 10 9 8 36 36 H 1.08000 * 120.03677 * 180.02562 * 11 10 9 37 37 H 1.07998 * 119.84645 * 179.97438 * 14 12 11 38 38 H 1.08994 * 113.27510 * 166.93083 * 16 3 2 39 39 H 1.08999 * 113.46911 * 332.74430 * 17 16 3 40 40 H 1.09003 * 113.52140 * 202.30792 * 17 16 3 41 41 H 0.97002 * 120.00094 * 179.97438 * 22 21 19 42 42 H 1.09006 * 113.46711 * 87.43954 * 27 18 17 43 43 H 1.08998 * 113.46517 * 217.87284 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1633 2.0447 -1.1641 5 8 1.8054 1.5317 -2.2031 6 6 2.7701 3.4241 -1.1748 7 1 2.4699 4.0247 -0.3161 8 6 2.6168 4.1522 -2.5176 9 6 4.1265 4.0865 -2.6423 10 6 5.2498 4.3878 -3.3924 11 6 6.5058 4.0362 -2.9400 12 6 6.6450 3.3788 -1.7292 13 9 7.8731 3.0340 -1.2839 14 6 5.5250 3.0757 -0.9764 15 6 4.2650 3.4258 -1.4275 16 6 2.3492 2.0412 1.2654 17 6 1.1731 2.1479 2.2459 18 7 1.5418 0.8170 2.7519 19 6 0.8871 -0.2267 3.3496 20 1 -0.1720 -0.1566 3.5491 21 6 1.5859 -1.3723 3.7045 22 7 2.8779 -1.4552 3.4671 23 14 0.6928 -2.7964 4.5192 24 1 -0.7444 -2.4560 4.6737 25 1 0.8254 -4.0114 3.6758 26 1 1.2873 -3.0542 5.8555 27 6 2.9241 1.1032 2.3395 28 1 -0.3634 0.4224 0.9368 29 1 -0.3632 0.6002 -0.8342 30 1 -0.3633 -1.0225 -0.1028 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.0913 3.5681 -3.2730 34 1 2.2296 5.1667 -2.4220 35 1 5.1432 4.8999 -4.3372 36 1 7.3789 4.2743 -3.5294 37 1 5.6346 2.5627 -0.0324 38 1 2.9076 2.9680 1.1347 39 1 0.1999 2.1715 1.7555 40 1 1.2925 2.9412 2.9838 41 1 3.3663 -2.2556 3.7154 42 1 3.5061 1.6213 3.1018 43 1 3.4427 0.2369 1.9289 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000951383755.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:35 Heat of formation + Delta-G solvation = 56.019418 kcal Electronic energy + Delta-G solvation = -27250.910804 eV Core-core repulsion = 23407.534052 eV Total energy + Delta-G solvation = -3843.376752 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.94391 -41.06240 -39.42568 -37.83283 -35.06606 -34.03374 -32.21034 -31.04102 -30.35001 -27.70920 -27.35034 -25.40679 -24.79438 -23.51915 -22.96137 -21.83349 -20.81188 -20.20878 -18.14887 -17.45515 -17.24795 -16.71086 -16.51129 -15.68694 -15.49911 -15.21193 -15.04276 -14.66920 -14.54748 -14.03793 -13.83087 -13.65249 -13.30247 -12.92621 -12.77596 -12.67346 -12.52550 -12.04143 -11.94597 -11.80886 -11.52203 -11.39857 -11.30423 -11.06948 -10.92774 -10.77329 -10.60377 -10.21883 -10.04496 -9.96483 -9.67624 -9.47271 -9.03095 -8.88930 -8.53711 -8.04612 -6.99157 -5.86881 -3.19527 0.96063 1.09096 2.74736 3.30609 3.34053 3.39932 3.42164 3.50098 3.85163 4.09246 4.33672 4.37233 4.45689 4.72901 4.83182 5.05068 5.11351 5.17820 5.28711 5.37884 5.42533 5.52409 5.60897 5.79276 5.81266 5.89861 5.95877 5.97768 6.00510 6.05538 6.15253 6.23932 6.33912 6.44085 6.50934 6.56286 6.73974 6.77598 6.99751 7.03064 7.07429 7.16920 7.42191 7.85395 7.99300 8.50531 8.93773 9.60279 10.50757 11.29937 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.017923 B = 0.003841 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.905270 B = 7287.774450 C = 8131.696171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.112 3.888 3 N -0.564 5.564 4 C 0.527 3.473 5 O -0.544 6.544 6 C -0.069 4.069 7 H 0.123 0.877 8 C -0.054 4.054 9 C -0.126 4.126 10 C -0.071 4.071 11 C -0.148 4.148 12 C 0.098 3.902 13 F -0.138 7.138 14 C -0.119 4.119 15 C -0.086 4.086 16 C 0.069 3.931 17 C 0.102 3.898 18 N -0.602 5.602 19 C -0.213 4.213 20 H 0.081 0.919 21 C -0.004 4.004 22 N -0.919 5.919 23 Si 0.908 3.092 24 H -0.280 1.280 25 H -0.289 1.289 26 H -0.291 1.291 27 C 0.145 3.855 28 H 0.068 0.932 29 H 0.039 0.961 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.122 0.878 33 H 0.110 0.890 34 H 0.098 0.902 35 H 0.129 0.871 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.092 0.908 39 H 0.046 0.954 40 H 0.042 0.958 41 H 0.254 0.746 42 H 0.038 0.962 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.413 13.317 -10.879 17.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.009 4.009 3 N -0.294 5.294 4 C 0.314 3.686 5 O -0.423 6.423 6 C -0.090 4.090 7 H 0.141 0.859 8 C -0.091 4.091 9 C -0.127 4.127 10 C -0.089 4.089 11 C -0.167 4.167 12 C 0.078 3.922 13 F -0.116 7.116 14 C -0.138 4.138 15 C -0.087 4.087 16 C -0.037 4.037 17 C -0.025 4.025 18 N -0.328 5.328 19 C -0.340 4.340 20 H 0.099 0.901 21 C -0.201 4.201 22 N -0.566 5.566 23 Si 0.739 3.261 24 H -0.205 1.205 25 H -0.216 1.216 26 H -0.218 1.218 27 C 0.018 3.982 28 H 0.087 0.913 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.140 0.860 33 H 0.128 0.872 34 H 0.116 0.884 35 H 0.147 0.853 36 H 0.156 0.844 37 H 0.155 0.845 38 H 0.109 0.891 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.055 0.945 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.230 12.644 -11.232 17.219 hybrid contribution 0.014 -0.848 0.998 1.310 sum 3.244 11.796 -10.234 15.950 Atomic orbital electron populations 1.21986 0.96306 1.01099 1.01502 1.21600 0.94503 0.80893 1.03911 1.47527 1.62744 1.14438 1.04659 1.19835 0.78731 0.86413 0.83662 1.90651 1.50967 1.68764 1.31869 1.21644 0.90144 0.96134 1.01032 0.85914 1.21817 0.90299 1.01107 0.95835 1.22287 0.96296 0.98623 0.95465 1.20067 0.89794 0.99530 0.99543 1.20973 0.98486 1.01481 0.95725 1.17315 0.79790 1.00560 0.94498 1.91514 1.40402 1.90373 1.89325 1.20287 0.89959 1.02066 1.01441 1.21461 0.92832 0.97853 0.96528 1.22947 0.99460 0.96674 0.84605 1.22905 0.96504 0.89809 0.93282 1.45648 1.04734 1.11133 1.71284 1.18891 0.92005 0.90969 1.32141 0.90122 1.24735 0.95727 0.98184 1.01463 1.69802 1.06344 1.28322 1.52113 0.86106 0.78645 0.82496 0.78895 1.20470 1.21634 1.21798 1.22509 0.89369 0.95602 0.90686 0.91345 0.94206 0.92774 0.92505 0.85977 0.87183 0.88383 0.85294 0.84424 0.84512 0.89074 0.93531 0.94037 0.93556 0.94479 0.90249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 10.05 37.16 0.37 -2.45 16 2 C 0.11 2.23 5.25 -4.04 -0.02 2.21 16 3 N -0.56 -9.98 2.72 -165.74 -0.45 -10.43 16 4 C 0.53 8.81 7.14 -10.99 -0.08 8.73 16 5 O -0.54 -10.61 15.47 5.56 0.09 -10.52 16 6 C -0.07 -0.87 3.20 -92.22 -0.30 -1.17 16 7 H 0.12 1.29 6.73 -51.93 -0.35 0.94 16 8 C -0.05 -0.58 7.76 -27.18 -0.21 -0.79 16 9 C -0.13 -1.48 7.49 -103.86 -0.78 -2.26 16 10 C -0.07 -0.73 10.02 -39.59 -0.40 -1.13 16 11 C -0.15 -1.56 10.02 -39.56 -0.40 -1.96 16 12 C 0.10 1.23 7.30 -39.47 -0.29 0.94 16 13 F -0.14 -1.82 17.27 2.25 0.04 -1.78 16 14 C -0.12 -1.58 10.01 -39.52 -0.40 -1.98 16 15 C -0.09 -1.13 6.97 -103.88 -0.72 -1.85 16 16 C 0.07 1.15 4.47 -67.68 -0.30 0.85 16 17 C 0.10 1.86 7.75 -8.51 -0.07 1.79 16 18 N -0.60 -13.61 2.21 -184.62 -0.41 -14.01 16 19 C -0.21 -5.40 9.77 -15.06 -0.15 -5.55 16 20 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 21 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 22 N -0.92 -25.34 11.50 55.49 0.64 -24.70 16 23 Si 0.91 21.13 29.55 -169.99 -5.02 16.10 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 27 C 0.14 3.03 6.43 -8.38 -0.05 2.98 16 28 H 0.07 1.35 5.67 -51.93 -0.29 1.06 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 1.15 7.63 -51.93 -0.40 0.75 16 32 H 0.12 2.83 5.13 -51.93 -0.27 2.57 16 33 H 0.11 1.32 7.10 -51.93 -0.37 0.95 16 34 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 35 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 36 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.14 1.79 8.06 -52.49 -0.42 1.37 16 38 H 0.09 1.24 6.01 -51.93 -0.31 0.93 16 39 H 0.05 0.84 6.90 -51.93 -0.36 0.48 16 40 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 42 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.08 1.90 6.31 -51.93 -0.33 1.57 16 LS Contribution 351.70 15.07 5.30 5.30 Total: -1.00 -29.55 351.70 -9.30 -38.85 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -5.60 Total: 3.01 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -3.88 Total: -1.82 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: -0.22 Total: -49.15 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.09 Total: -10.52 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.55 -9.30 -38.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951383755.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.872 kcal (2) G-P(sol) polarization free energy of solvation -29.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds