Wall clock time and date at job start Tue Mar 31 2020 14:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47193 * 2 1 4 4 C 1.34773 * 119.99684 * 274.15060 * 3 2 1 5 5 O 1.21275 * 120.00421 * 4.95884 * 4 3 2 6 6 C 1.50700 * 119.99805 * 184.95309 * 4 3 2 7 7 H 1.09002 * 112.82817 * 322.44003 * 6 4 3 8 8 C 1.53520 * 113.58614 * 191.32986 * 6 4 3 9 9 C 1.51623 * 87.24906 * 245.40659 * 8 6 4 10 10 C 1.38389 * 147.49136 * 180.02562 * 9 8 6 11 11 C 1.38053 * 120.35877 * 180.02562 * 10 9 8 12 12 C 1.38474 * 119.92739 * 359.97438 * 11 10 9 13 13 F 1.35107 * 120.04661 * 180.02562 * 12 11 10 14 14 C 1.38316 * 119.90348 * 0.02562 * 12 11 10 15 15 C 1.38335 * 120.30445 * 0.02562 * 14 12 11 16 16 C 1.46504 * 119.99909 * 94.15529 * 3 2 1 17 17 C 1.53491 * 114.20619 * 299.99631 * 16 3 2 18 18 N 1.47075 * 87.98247 * 87.52082 * 17 16 3 19 19 C 1.36937 * 136.05617 * 207.07753 * 18 17 16 20 20 H 1.08001 * 119.99789 * 359.73218 * 19 18 17 21 21 C 1.38809 * 119.99907 * 180.02562 * 19 18 17 22 22 N 1.31618 * 119.99998 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00092 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47039 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47061 * 120.00361 * 23 21 19 26 26 H 1.48503 * 109.47264 * 240.00520 * 23 21 19 27 27 C 1.47065 * 87.88184 * 27.34186 * 18 17 16 28 28 H 1.08998 * 109.47571 * 294.26950 * 1 2 3 29 29 H 1.09001 * 109.46584 * 54.26807 * 1 2 3 30 30 H 1.09002 * 109.47173 * 174.26122 * 1 2 3 31 31 H 1.09000 * 109.47343 * 239.99386 * 2 1 3 32 32 H 1.08998 * 109.46755 * 119.99780 * 2 1 3 33 33 H 1.08994 * 113.58892 * 359.97438 * 8 6 4 34 34 H 1.09007 * 113.58730 * 130.73872 * 8 6 4 35 35 H 1.07998 * 119.82253 * 359.95972 * 10 9 8 36 36 H 1.08000 * 120.03677 * 180.02562 * 11 10 9 37 37 H 1.07998 * 119.84645 * 179.97438 * 14 12 11 38 38 H 1.08994 * 113.27510 * 166.93083 * 16 3 2 39 39 H 1.08999 * 113.46911 * 332.74430 * 17 16 3 40 40 H 1.09003 * 113.52140 * 202.30792 * 17 16 3 41 41 H 0.97002 * 120.00094 * 179.97438 * 22 21 19 42 42 H 1.09006 * 113.46711 * 87.43954 * 27 18 17 43 43 H 1.08998 * 113.46517 * 217.87284 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1633 2.0447 -1.1641 5 8 1.8054 1.5317 -2.2031 6 6 2.7701 3.4241 -1.1748 7 1 2.4699 4.0247 -0.3161 8 6 2.6168 4.1522 -2.5176 9 6 4.1265 4.0865 -2.6423 10 6 5.2498 4.3878 -3.3924 11 6 6.5058 4.0362 -2.9400 12 6 6.6450 3.3788 -1.7292 13 9 7.8731 3.0340 -1.2839 14 6 5.5250 3.0757 -0.9764 15 6 4.2650 3.4258 -1.4275 16 6 2.3492 2.0412 1.2654 17 6 1.1731 2.1479 2.2459 18 7 1.5418 0.8170 2.7519 19 6 0.8871 -0.2267 3.3496 20 1 -0.1720 -0.1566 3.5491 21 6 1.5859 -1.3723 3.7045 22 7 2.8779 -1.4552 3.4671 23 14 0.6928 -2.7964 4.5192 24 1 -0.7444 -2.4560 4.6737 25 1 0.8254 -4.0114 3.6758 26 1 1.2873 -3.0542 5.8555 27 6 2.9241 1.1032 2.3395 28 1 -0.3634 0.4224 0.9368 29 1 -0.3632 0.6002 -0.8342 30 1 -0.3633 -1.0225 -0.1028 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.0913 3.5681 -3.2730 34 1 2.2296 5.1667 -2.4220 35 1 5.1432 4.8999 -4.3372 36 1 7.3789 4.2743 -3.5294 37 1 5.6346 2.5627 -0.0324 38 1 2.9076 2.9680 1.1347 39 1 0.1999 2.1715 1.7555 40 1 1.2925 2.9412 2.9838 41 1 3.3663 -2.2556 3.7154 42 1 3.5061 1.6213 3.1018 43 1 3.4427 0.2369 1.9289 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000951383755.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:34 Heat of formation + Delta-G solvation = 41.558581 kcal Electronic energy + Delta-G solvation = -27251.537873 eV Core-core repulsion = 23407.534052 eV Total energy + Delta-G solvation = -3844.003821 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.91677 -42.16389 -40.74289 -39.25354 -36.04208 -35.58564 -34.08066 -32.12192 -31.69064 -29.37080 -28.45511 -26.65632 -26.15222 -25.26494 -24.12005 -22.97973 -22.11646 -21.48802 -19.42840 -18.94612 -18.32210 -18.22807 -17.52995 -17.01007 -16.77070 -16.59190 -16.13835 -16.05329 -15.88504 -15.62580 -15.02565 -14.60865 -14.57923 -14.48890 -14.32954 -13.95203 -13.74865 -13.41535 -13.32559 -12.96621 -12.87870 -12.79922 -12.69318 -12.67767 -12.32738 -12.23794 -11.96924 -11.81617 -11.69380 -11.48453 -11.20483 -11.02968 -10.78758 -9.95946 -9.53924 -9.45522 -8.84811 -7.85876 -5.16303 0.06356 0.19852 1.46109 1.47428 1.48561 1.56148 2.00937 2.49451 2.54867 2.88650 3.22658 3.36406 3.43323 3.49277 3.55163 3.55661 3.77873 3.99242 4.17731 4.31658 4.34385 4.36695 4.47390 4.54524 4.58405 4.66098 4.68700 4.85432 4.86511 4.96435 4.98221 5.00122 5.06827 5.12330 5.18034 5.21464 5.30066 5.39819 5.41716 5.52943 5.61639 5.67715 5.88118 5.95714 6.58467 6.95999 7.14225 7.66181 8.63987 9.30951 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.017923 B = 0.003841 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.905270 B = 7287.774450 C = 8131.696171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.119 3.881 3 N -0.570 5.570 4 C 0.526 3.474 5 O -0.574 6.574 6 C -0.066 4.066 7 H 0.151 0.849 8 C -0.042 4.042 9 C -0.127 4.127 10 C -0.068 4.068 11 C -0.139 4.139 12 C 0.076 3.924 13 F -0.147 7.147 14 C -0.136 4.136 15 C -0.110 4.110 16 C 0.096 3.904 17 C 0.107 3.893 18 N -0.626 5.626 19 C -0.203 4.203 20 H 0.082 0.918 21 C -0.058 4.058 22 N -0.949 5.949 23 Si 0.961 3.039 24 H -0.267 1.267 25 H -0.298 1.298 26 H -0.299 1.299 27 C 0.141 3.859 28 H 0.058 0.942 29 H 0.046 0.954 30 H 0.055 0.945 31 H 0.044 0.956 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.136 0.864 35 H 0.163 0.837 36 H 0.165 0.835 37 H 0.126 0.874 38 H 0.134 0.866 39 H 0.051 0.949 40 H 0.068 0.932 41 H 0.245 0.755 42 H 0.037 0.963 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.704 16.275 -12.272 20.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.003 4.003 3 N -0.300 5.300 4 C 0.315 3.685 5 O -0.454 6.454 6 C -0.087 4.087 7 H 0.168 0.832 8 C -0.079 4.079 9 C -0.127 4.127 10 C -0.086 4.086 11 C -0.158 4.158 12 C 0.057 3.943 13 F -0.126 7.126 14 C -0.155 4.155 15 C -0.111 4.111 16 C -0.009 4.009 17 C -0.019 4.019 18 N -0.352 5.352 19 C -0.331 4.331 20 H 0.099 0.901 21 C -0.251 4.251 22 N -0.599 5.599 23 Si 0.791 3.209 24 H -0.191 1.191 25 H -0.225 1.225 26 H -0.226 1.226 27 C 0.015 3.985 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.106 0.894 33 H 0.116 0.884 34 H 0.154 0.846 35 H 0.181 0.819 36 H 0.182 0.818 37 H 0.144 0.856 38 H 0.151 0.849 39 H 0.070 0.930 40 H 0.086 0.914 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.499 15.648 -12.630 20.264 hybrid contribution 0.259 -1.728 1.357 2.212 sum 2.758 13.920 -11.274 18.124 Atomic orbital electron populations 1.21840 0.95253 1.01284 1.01111 1.21279 0.95213 0.82290 1.01543 1.47581 1.63026 1.13706 1.05650 1.20546 0.77733 0.87724 0.82485 1.90634 1.52090 1.69960 1.32731 1.21741 0.89677 0.93640 1.03620 0.83151 1.21845 0.89546 1.02582 0.93905 1.22568 0.97249 0.98044 0.94840 1.20455 0.88950 0.98721 1.00436 1.21327 0.99851 0.99851 0.94745 1.17577 0.79307 1.01782 0.95608 1.91485 1.40873 1.90642 1.89592 1.20349 0.90771 1.02785 1.01565 1.21551 0.92630 0.99151 0.97755 1.22790 0.98348 0.96561 0.83168 1.23070 0.97133 0.88071 0.93664 1.45848 1.05747 1.12579 1.71027 1.19109 0.92165 0.91701 1.30123 0.90072 1.25330 0.96310 1.00350 1.03125 1.69969 1.07538 1.28324 1.54034 0.85259 0.78334 0.79937 0.77367 1.19117 1.22542 1.22618 1.22475 0.88701 0.95257 0.92107 0.92285 0.93475 0.92628 0.93706 0.89445 0.88415 0.84577 0.81928 0.81778 0.85596 0.84863 0.93041 0.91429 0.94630 0.94517 0.93970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.10 10.05 71.98 0.72 -4.38 16 2 C 0.12 4.85 5.25 86.38 0.45 5.31 16 3 N -0.57 -19.79 2.72 -796.68 -2.17 -21.96 16 4 C 0.53 16.83 7.14 87.66 0.63 17.46 16 5 O -0.57 -21.93 15.47 -3.01 -0.05 -21.97 16 6 C -0.07 -1.48 3.20 -11.83 -0.04 -1.52 16 7 H 0.15 2.48 6.73 -2.39 -0.02 2.46 16 8 C -0.04 -0.75 7.76 30.31 0.24 -0.52 16 9 C -0.13 -2.56 7.49 -19.37 -0.14 -2.71 16 10 C -0.07 -1.14 10.02 22.26 0.22 -0.92 16 11 C -0.14 -2.56 10.02 22.28 0.22 -2.34 16 12 C 0.08 1.85 7.30 22.34 0.16 2.01 16 13 F -0.15 -3.87 17.27 44.97 0.78 -3.09 16 14 C -0.14 -3.53 10.01 22.31 0.22 -3.31 16 15 C -0.11 -2.66 6.97 -19.38 -0.14 -2.80 16 16 C 0.10 3.08 4.47 45.55 0.20 3.28 16 17 C 0.11 3.64 7.75 83.17 0.64 4.29 16 18 N -0.63 -28.23 2.21 -738.02 -1.63 -29.86 16 19 C -0.20 -10.34 9.77 84.03 0.82 -9.52 16 20 H 0.08 4.05 7.83 -2.91 -0.02 4.02 16 21 C -0.06 -3.11 5.50 84.86 0.47 -2.64 16 22 N -0.95 -54.45 11.50 21.65 0.25 -54.20 16 23 Si 0.96 44.39 29.55 68.60 2.03 46.42 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 25 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 26 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 27 C 0.14 5.97 6.43 83.26 0.54 6.51 16 28 H 0.06 2.30 5.67 -2.39 -0.01 2.28 16 29 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.04 1.89 7.63 -2.39 -0.02 1.87 16 32 H 0.09 4.24 5.13 -2.39 -0.01 4.22 16 33 H 0.10 2.07 7.10 -2.39 -0.02 2.05 16 34 H 0.14 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 36 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 37 H 0.13 3.40 8.06 -2.91 -0.02 3.37 16 38 H 0.13 3.19 6.01 -2.39 -0.01 3.18 16 39 H 0.05 1.73 6.90 -2.39 -0.02 1.71 16 40 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.24 13.95 8.31 -92.71 -0.77 13.18 16 42 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 43 H 0.04 2.11 6.31 -2.39 -0.02 2.09 16 Total: -1.00 -66.78 351.70 5.47 -61.31 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 1.04 Total: 15.14 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: 5.22 Total: 8.21 kcal Atomic # 7 Polarization: -102.47 SS G_CDS: -3.55 Total: -106.02 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.05 Total: -21.97 kcal Atomic # 9 Polarization: -3.87 SS G_CDS: 0.78 Total: -3.09 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -66.78 5.47 -61.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951383755.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.865 kcal (2) G-P(sol) polarization free energy of solvation -66.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds