Wall clock time and date at job start Tue Mar 31 2020 13:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47559 * 2 1 4 4 C 1.50705 * 109.47087 * 120.00168 * 2 1 3 5 5 O 1.21288 * 119.99915 * 119.99890 * 4 2 1 6 6 N 1.34774 * 120.00108 * 300.00360 * 4 2 1 7 7 C 1.46494 * 119.99989 * 179.97438 * 6 4 2 8 8 H 1.08998 * 115.51993 * 9.58087 * 7 6 4 9 9 C 1.53000 * 117.44262 * 224.23218 * 7 6 4 10 10 H 1.08996 * 119.53985 * 4.12391 * 9 7 6 11 11 C 1.57695 * 116.10953 * 161.63563 * 9 7 6 12 12 N 1.48151 * 104.67195 * 87.31315 * 11 9 7 13 13 C 1.36933 * 127.83514 * 139.77067 * 12 11 9 14 14 H 1.07999 * 120.00639 * 344.33757 * 13 12 11 15 15 C 1.38818 * 119.99810 * 164.34106 * 13 12 11 16 16 N 1.31620 * 119.99804 * 350.56534 * 15 13 12 17 17 Si 1.86798 * 120.00157 * 170.57488 * 15 13 12 18 18 H 1.48498 * 109.47456 * 59.99650 * 17 15 13 19 19 H 1.48500 * 109.47238 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46746 * 299.99467 * 17 15 13 21 21 C 1.48139 * 104.32359 * 319.77659 * 12 11 9 22 22 C 1.53005 * 117.44361 * 154.99427 * 7 6 4 23 23 H 1.09002 * 119.53499 * 355.88224 * 22 7 6 24 24 C 1.50702 * 109.47212 * 239.99950 * 2 1 3 25 25 C 1.38218 * 120.01665 * 300.00522 * 24 2 1 26 26 C 1.38217 * 120.02785 * 179.97438 * 25 24 2 27 27 C 1.38263 * 120.05352 * 0.02562 * 26 25 24 28 28 C 1.38179 * 120.02504 * 0.02562 * 27 26 25 29 29 C 1.38444 * 120.00922 * 119.72599 * 24 2 1 30 30 F 1.35101 * 120.02772 * 359.97438 * 29 24 2 31 31 H 1.09004 * 109.47276 * 59.99787 * 1 2 3 32 32 H 1.09000 * 109.47599 * 300.00098 * 1 2 3 33 33 H 1.08999 * 109.47749 * 179.97438 * 1 2 3 34 34 H 0.97003 * 119.99617 * 359.97438 * 6 4 2 35 35 H 1.08995 * 110.92349 * 328.23739 * 11 9 7 36 36 H 1.08997 * 109.93764 * 205.89194 * 11 9 7 37 37 H 0.97002 * 119.99998 * 180.02562 * 16 15 13 38 38 H 1.09000 * 110.40427 * 280.79802 * 21 12 11 39 39 H 1.09000 * 110.41209 * 158.36657 * 21 12 11 40 40 H 1.08008 * 119.98414 * 359.95057 * 25 24 2 41 41 H 1.08000 * 119.97760 * 180.02562 * 26 25 24 42 42 H 1.08003 * 119.98959 * 179.97438 * 27 26 25 43 43 H 1.07997 * 120.01229 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.7295 -1.6966 1.1192 6 7 1.7066 -0.2501 2.4546 7 6 2.1945 -0.9411 3.6507 8 1 2.9417 -1.7148 3.4741 9 6 1.1972 -1.1716 4.7879 10 1 0.1544 -0.8837 4.6548 11 6 1.5897 -2.2772 5.8416 12 7 2.4104 -1.5628 6.8471 13 6 2.3921 -1.7151 8.2078 14 1 1.5666 -2.2239 8.6833 15 6 3.4347 -1.2154 8.9762 16 7 4.5242 -0.7631 8.3926 17 14 3.2914 -1.1852 10.8384 18 1 3.1052 -2.5694 11.3431 19 1 4.5299 -0.6089 11.4209 20 1 2.1255 -0.3538 11.2317 21 6 3.2551 -0.6463 6.0465 22 6 2.3182 -0.1220 4.9371 23 1 2.1103 0.9478 4.9150 24 6 2.0323 -0.7104 -1.2305 25 6 1.6985 -2.0337 -1.4496 26 6 2.1587 -2.6853 -2.5783 27 6 2.9538 -2.0147 -3.4892 28 6 3.2897 -0.6921 -3.2718 29 6 2.8236 -0.0361 -2.1448 30 9 3.1454 1.2591 -1.9348 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 0.5138 0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 1.1492 0.5388 2.5436 35 1 2.1695 -3.0726 5.3736 36 1 0.6911 -2.6849 6.3047 37 1 5.2529 -0.4142 8.9295 38 1 4.0950 -1.1871 5.6104 39 1 3.6120 0.1783 6.6636 40 1 1.0781 -2.5588 -0.7383 41 1 1.8971 -3.7192 -2.7489 42 1 3.3131 -2.5250 -4.3706 43 1 3.9110 -0.1686 -3.9833 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962071679.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:31 Heat of formation + Delta-G solvation = 3.339629 kcal Electronic energy + Delta-G solvation = -25859.627875 eV Core-core repulsion = 22013.966756 eV Total energy + Delta-G solvation = -3845.661119 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.11794 -40.36415 -39.05827 -38.09008 -34.55574 -34.41898 -32.57009 -30.75947 -30.36619 -29.47176 -27.03083 -25.81036 -25.01693 -23.13061 -22.60774 -21.35509 -20.48225 -19.84452 -19.28911 -17.89915 -17.27192 -16.89520 -16.60533 -16.26048 -15.74989 -15.70995 -14.93922 -14.74170 -14.48592 -14.14711 -13.96273 -13.61416 -13.35383 -13.23802 -12.94372 -12.74218 -12.55711 -12.30523 -12.25108 -12.21085 -11.56611 -11.50275 -11.36865 -11.16226 -10.98891 -10.82125 -10.37588 -10.22127 -10.17711 -9.78012 -9.72168 -9.24345 -9.14378 -8.86197 -8.74404 -8.33244 -6.88267 -5.80732 -3.15108 0.91308 1.02044 2.59983 3.04271 3.38321 3.42711 3.44198 3.45801 4.02612 4.15754 4.29765 4.44991 4.46172 4.63750 4.77279 4.84611 4.91557 5.05458 5.12345 5.16161 5.32351 5.36017 5.39169 5.47624 5.57191 5.63744 5.72872 5.74444 5.82653 5.85506 5.91099 6.12489 6.14558 6.20399 6.23038 6.50431 6.66243 6.67688 6.79785 6.87602 7.33851 7.51627 7.55539 7.70165 8.19265 8.25262 9.09628 9.72531 10.49626 11.33658 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.029768 B = 0.002378 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.374346 B =11773.325018 C =11856.652096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.074 4.074 3 H 0.108 0.892 4 C 0.521 3.479 5 O -0.529 6.529 6 N -0.696 5.696 7 C 0.093 3.907 8 H 0.131 0.869 9 C -0.185 4.185 10 H 0.106 0.894 11 C 0.158 3.842 12 N -0.593 5.593 13 C -0.229 4.229 14 H 0.077 0.923 15 C -0.005 4.005 16 N -0.915 5.915 17 Si 0.914 3.086 18 H -0.283 1.283 19 H -0.290 1.290 20 H -0.284 1.284 21 C 0.186 3.814 22 C -0.180 4.180 23 H 0.101 0.899 24 C -0.098 4.098 25 C -0.056 4.056 26 C -0.131 4.131 27 C -0.092 4.092 28 C -0.158 4.158 29 C 0.103 3.897 30 F -0.139 7.139 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.398 0.602 35 H 0.030 0.970 36 H 0.050 0.950 37 H 0.255 0.745 38 H 0.026 0.974 39 H 0.090 0.910 40 H 0.131 0.869 41 H 0.129 0.871 42 H 0.131 0.869 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.179 2.162 -23.908 25.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.096 4.096 3 H 0.126 0.874 4 C 0.306 3.694 5 O -0.404 6.404 6 N -0.344 5.344 7 C -0.012 4.012 8 H 0.149 0.851 9 C -0.206 4.206 10 H 0.124 0.876 11 C 0.031 3.969 12 N -0.316 5.316 13 C -0.357 4.357 14 H 0.094 0.906 15 C -0.202 4.202 16 N -0.561 5.561 17 Si 0.744 3.256 18 H -0.209 1.209 19 H -0.215 1.215 20 H -0.211 1.211 21 C 0.059 3.941 22 C -0.201 4.201 23 H 0.119 0.881 24 C -0.099 4.099 25 C -0.074 4.074 26 C -0.149 4.149 27 C -0.110 4.110 28 C -0.176 4.176 29 C 0.084 3.916 30 F -0.118 7.118 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.232 0.768 35 H 0.048 0.952 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.044 0.956 39 H 0.109 0.891 40 H 0.148 0.852 41 H 0.147 0.853 42 H 0.149 0.851 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.497 1.535 -23.718 24.922 hybrid contribution -0.216 0.864 1.031 1.363 sum -7.713 2.399 -22.687 24.082 Atomic orbital electron populations 1.21795 0.91484 1.03318 1.03091 1.20224 0.98089 1.00710 0.90557 0.87351 1.20283 0.80321 0.84677 0.84097 1.90730 1.37231 1.26025 1.86460 1.45371 1.52917 1.31199 1.04919 1.21900 1.00365 0.99294 0.79654 0.85117 1.25091 0.94848 1.01745 0.98961 0.87578 1.21690 0.94847 0.91503 0.88901 1.45109 1.43531 1.41613 1.01315 1.18941 1.03265 1.33871 0.79605 0.90561 1.24910 0.95156 1.01820 0.98349 1.69891 1.05537 1.46497 1.34140 0.86179 0.76852 0.77842 0.84754 1.20947 1.21533 1.21083 1.21057 0.89907 0.94682 0.88404 1.24635 1.02620 0.96431 0.96444 0.88116 1.19338 0.99993 0.95331 0.95278 1.20856 0.97783 0.92524 0.96260 1.21195 0.98766 1.00393 0.94561 1.21008 0.97120 0.93493 0.99377 1.21074 1.02986 0.96053 0.97525 1.17518 0.98880 0.78960 0.96249 1.91477 1.91174 1.34257 1.94875 0.91159 0.91356 0.91524 0.76772 0.95213 0.93145 0.93448 0.95594 0.89144 0.85159 0.85299 0.85127 0.84815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 8.90 37.15 0.33 -0.73 16 2 C -0.07 -0.77 2.89 -92.92 -0.27 -1.04 16 3 H 0.11 1.05 7.13 -51.93 -0.37 0.68 16 4 C 0.52 7.21 7.02 -10.98 -0.08 7.13 16 5 O -0.53 -9.38 14.68 5.55 0.08 -9.30 16 6 N -0.70 -9.20 5.46 -53.80 -0.29 -9.49 16 7 C 0.09 1.57 5.92 -67.93 -0.40 1.17 16 8 H 0.13 2.53 7.40 -51.93 -0.38 2.15 16 9 C -0.18 -3.25 7.34 -87.38 -0.64 -3.89 16 10 H 0.11 1.64 8.14 -51.93 -0.42 1.22 16 11 C 0.16 3.33 7.10 -0.57 0.00 3.33 16 12 N -0.59 -15.21 3.38 -166.74 -0.56 -15.78 16 13 C -0.23 -6.37 10.35 -15.06 -0.16 -6.52 16 14 H 0.08 2.04 7.85 -52.49 -0.41 1.63 16 15 C -0.01 -0.14 5.40 -17.43 -0.09 -0.24 16 16 N -0.91 -26.85 10.88 55.49 0.60 -26.24 16 17 Si 0.91 21.88 29.56 -169.99 -5.03 16.86 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 C 0.19 4.48 5.69 -2.41 -0.01 4.47 16 22 C -0.18 -3.38 6.98 -89.22 -0.62 -4.01 16 23 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 24 C -0.10 -1.11 4.40 -104.55 -0.46 -1.57 16 25 C -0.06 -0.60 7.93 -39.60 -0.31 -0.91 16 26 C -0.13 -1.17 10.04 -39.58 -0.40 -1.57 16 27 C -0.09 -0.76 10.04 -39.59 -0.40 -1.16 16 28 C -0.16 -1.47 10.03 -39.51 -0.40 -1.87 16 29 C 0.10 1.16 7.25 -39.41 -0.29 0.87 16 30 F -0.14 -1.63 16.19 2.25 0.04 -1.59 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.44 7.56 -51.93 -0.39 0.04 16 33 H 0.07 0.52 7.39 -51.93 -0.38 0.13 16 34 H 0.40 4.09 8.24 -40.82 -0.34 3.76 16 35 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.09 2.42 6.53 -51.93 -0.34 2.08 16 40 H 0.13 1.35 7.52 -52.48 -0.39 0.95 16 41 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 42 H 0.13 0.72 8.06 -52.48 -0.42 0.29 16 43 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 LS Contribution 359.72 15.07 5.42 5.42 Total: -1.00 -32.66 359.72 -9.89 -42.56 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -5.95 Total: 4.10 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -4.20 Total: -6.53 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: -0.25 Total: -51.51 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.08 Total: -9.30 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.66 -9.89 -42.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962071679.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.897 kcal (2) G-P(sol) polarization free energy of solvation -32.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds