Wall clock time and date at job start Tue Mar 31 2020 13:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47559 * 2 1 4 4 C 1.50705 * 109.47087 * 120.00168 * 2 1 3 5 5 O 1.21288 * 119.99915 * 119.99890 * 4 2 1 6 6 N 1.34774 * 120.00108 * 300.00360 * 4 2 1 7 7 C 1.46494 * 119.99989 * 179.97438 * 6 4 2 8 8 H 1.08998 * 115.51993 * 9.58087 * 7 6 4 9 9 C 1.53000 * 117.44262 * 224.23218 * 7 6 4 10 10 H 1.08996 * 119.53985 * 4.12391 * 9 7 6 11 11 C 1.57695 * 116.10953 * 161.63563 * 9 7 6 12 12 N 1.48151 * 104.67195 * 87.31315 * 11 9 7 13 13 C 1.36933 * 127.83514 * 139.77067 * 12 11 9 14 14 H 1.07999 * 120.00639 * 344.33757 * 13 12 11 15 15 C 1.38818 * 119.99810 * 164.34106 * 13 12 11 16 16 N 1.31620 * 119.99804 * 350.56534 * 15 13 12 17 17 Si 1.86798 * 120.00157 * 170.57488 * 15 13 12 18 18 H 1.48498 * 109.47456 * 59.99650 * 17 15 13 19 19 H 1.48500 * 109.47238 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46746 * 299.99467 * 17 15 13 21 21 C 1.48139 * 104.32359 * 319.77659 * 12 11 9 22 22 C 1.53005 * 117.44361 * 154.99427 * 7 6 4 23 23 H 1.09002 * 119.53499 * 355.88224 * 22 7 6 24 24 C 1.50702 * 109.47212 * 239.99950 * 2 1 3 25 25 C 1.38218 * 120.01665 * 300.00522 * 24 2 1 26 26 C 1.38217 * 120.02785 * 179.97438 * 25 24 2 27 27 C 1.38263 * 120.05352 * 0.02562 * 26 25 24 28 28 C 1.38179 * 120.02504 * 0.02562 * 27 26 25 29 29 C 1.38444 * 120.00922 * 119.72599 * 24 2 1 30 30 F 1.35101 * 120.02772 * 359.97438 * 29 24 2 31 31 H 1.09004 * 109.47276 * 59.99787 * 1 2 3 32 32 H 1.09000 * 109.47599 * 300.00098 * 1 2 3 33 33 H 1.08999 * 109.47749 * 179.97438 * 1 2 3 34 34 H 0.97003 * 119.99617 * 359.97438 * 6 4 2 35 35 H 1.08995 * 110.92349 * 328.23739 * 11 9 7 36 36 H 1.08997 * 109.93764 * 205.89194 * 11 9 7 37 37 H 0.97002 * 119.99998 * 180.02562 * 16 15 13 38 38 H 1.09000 * 110.40427 * 280.79802 * 21 12 11 39 39 H 1.09000 * 110.41209 * 158.36657 * 21 12 11 40 40 H 1.08008 * 119.98414 * 359.95057 * 25 24 2 41 41 H 1.08000 * 119.97760 * 180.02562 * 26 25 24 42 42 H 1.08003 * 119.98959 * 179.97438 * 27 26 25 43 43 H 1.07997 * 120.01229 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.7295 -1.6966 1.1192 6 7 1.7066 -0.2501 2.4546 7 6 2.1945 -0.9411 3.6507 8 1 2.9417 -1.7148 3.4741 9 6 1.1972 -1.1716 4.7879 10 1 0.1544 -0.8837 4.6548 11 6 1.5897 -2.2772 5.8416 12 7 2.4104 -1.5628 6.8471 13 6 2.3921 -1.7151 8.2078 14 1 1.5666 -2.2239 8.6833 15 6 3.4347 -1.2154 8.9762 16 7 4.5242 -0.7631 8.3926 17 14 3.2914 -1.1852 10.8384 18 1 3.1052 -2.5694 11.3431 19 1 4.5299 -0.6089 11.4209 20 1 2.1255 -0.3538 11.2317 21 6 3.2551 -0.6463 6.0465 22 6 2.3182 -0.1220 4.9371 23 1 2.1103 0.9478 4.9150 24 6 2.0323 -0.7104 -1.2305 25 6 1.6985 -2.0337 -1.4496 26 6 2.1587 -2.6853 -2.5783 27 6 2.9538 -2.0147 -3.4892 28 6 3.2897 -0.6921 -3.2718 29 6 2.8236 -0.0361 -2.1448 30 9 3.1454 1.2591 -1.9348 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 0.5138 0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 1.1492 0.5388 2.5436 35 1 2.1695 -3.0726 5.3736 36 1 0.6911 -2.6849 6.3047 37 1 5.2529 -0.4142 8.9295 38 1 4.0950 -1.1871 5.6104 39 1 3.6120 0.1783 6.6636 40 1 1.0781 -2.5588 -0.7383 41 1 1.8971 -3.7192 -2.7489 42 1 3.3131 -2.5250 -4.3706 43 1 3.9110 -0.1686 -3.9833 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962071679.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:30 Heat of formation + Delta-G solvation = -15.927205 kcal Electronic energy + Delta-G solvation = -25860.463347 eV Core-core repulsion = 22013.966756 eV Total energy + Delta-G solvation = -3846.496592 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.94222 -41.44649 -40.24873 -39.29223 -36.10160 -35.36753 -34.19722 -32.13574 -31.44511 -30.28176 -28.81456 -27.63342 -25.91511 -24.14859 -23.56356 -22.72858 -21.98621 -21.03083 -20.83424 -18.86796 -18.66908 -18.22356 -17.77292 -17.22019 -16.79487 -16.58501 -16.53928 -15.99772 -15.64880 -15.29794 -15.08899 -14.83785 -14.66388 -14.63397 -14.13604 -13.79416 -13.70187 -13.35558 -13.22436 -13.17881 -12.98526 -12.90950 -12.86079 -12.68135 -12.16397 -12.15041 -12.01348 -11.90980 -11.84631 -11.68280 -10.96415 -10.82423 -10.69764 -9.88359 -9.72229 -9.61318 -8.94226 -7.93000 -5.30108 0.17489 0.29468 1.46417 1.48938 1.49909 1.56654 1.93293 2.47910 2.69067 2.85000 3.26168 3.28674 3.38812 3.56524 3.66296 3.81486 3.87363 3.94798 4.06923 4.08312 4.13212 4.22440 4.29899 4.40854 4.45031 4.50338 4.74596 4.81027 4.85148 4.88444 4.97183 4.98622 5.10012 5.17829 5.24873 5.26429 5.39527 5.41627 5.43613 5.49950 5.53086 5.62503 5.96352 6.14838 6.48610 6.98446 7.17912 7.65827 8.44412 9.20904 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.029768 B = 0.002378 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.374346 B =11773.325018 C =11856.652096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.065 4.065 3 H 0.117 0.883 4 C 0.520 3.480 5 O -0.571 6.571 6 N -0.681 5.681 7 C 0.114 3.886 8 H 0.102 0.898 9 C -0.161 4.161 10 H 0.143 0.857 11 C 0.148 3.852 12 N -0.616 5.616 13 C -0.243 4.243 14 H 0.084 0.916 15 C -0.064 4.064 16 N -0.949 5.949 17 Si 0.983 3.017 18 H -0.275 1.275 19 H -0.295 1.295 20 H -0.274 1.274 21 C 0.189 3.811 22 C -0.182 4.182 23 H 0.125 0.875 24 C -0.116 4.116 25 C -0.073 4.073 26 C -0.134 4.134 27 C -0.089 4.089 28 C -0.162 4.162 29 C 0.079 3.921 30 F -0.147 7.147 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.418 0.582 35 H 0.020 0.980 36 H 0.063 0.937 37 H 0.250 0.750 38 H -0.007 1.007 39 H 0.058 0.942 40 H 0.127 0.873 41 H 0.151 0.849 42 H 0.162 0.838 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.313 2.522 -25.361 27.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.087 4.087 3 H 0.135 0.865 4 C 0.308 3.692 5 O -0.450 6.450 6 N -0.331 5.331 7 C 0.007 3.993 8 H 0.120 0.880 9 C -0.182 4.182 10 H 0.161 0.839 11 C 0.022 3.978 12 N -0.340 5.340 13 C -0.371 4.371 14 H 0.102 0.898 15 C -0.257 4.257 16 N -0.596 5.596 17 Si 0.811 3.189 18 H -0.201 1.201 19 H -0.221 1.221 20 H -0.200 1.200 21 C 0.063 3.937 22 C -0.203 4.203 23 H 0.143 0.857 24 C -0.117 4.117 25 C -0.091 4.091 26 C -0.152 4.152 27 C -0.107 4.107 28 C -0.180 4.180 29 C 0.060 3.940 30 F -0.126 7.126 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.083 0.917 34 H 0.255 0.745 35 H 0.038 0.962 36 H 0.082 0.918 37 H 0.059 0.941 38 H 0.011 0.989 39 H 0.076 0.924 40 H 0.145 0.855 41 H 0.168 0.832 42 H 0.180 0.820 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -9.685 1.912 -25.201 27.065 hybrid contribution 0.495 0.648 1.382 1.605 sum -9.190 2.560 -23.819 25.658 Atomic orbital electron populations 1.21823 0.89068 1.03708 1.04659 1.20223 0.99948 1.00236 0.88260 0.86533 1.20952 0.79270 0.84106 0.84889 1.90715 1.39097 1.28094 1.87057 1.45167 1.52847 1.31516 1.03573 1.21401 0.99439 0.98027 0.80447 0.87980 1.25004 0.96348 0.99023 0.97804 0.83907 1.21834 0.94535 0.92281 0.89104 1.45409 1.44232 1.42810 1.01566 1.19370 1.03379 1.33340 0.81033 0.89833 1.25798 0.94901 1.02016 1.03003 1.70103 1.06241 1.47771 1.35531 0.85090 0.76660 0.78091 0.79093 1.20062 1.22077 1.19981 1.20778 0.90311 0.93175 0.89406 1.24311 1.01992 0.97829 0.96204 0.85708 1.19507 1.00622 0.95850 0.95724 1.20984 0.98467 0.92582 0.97061 1.21540 0.98221 1.01443 0.93985 1.21396 0.96150 0.93084 1.00050 1.21406 1.02752 0.96656 0.97226 1.17800 0.99871 0.78972 0.97360 1.91448 1.91363 1.34773 1.95033 0.89756 0.89635 0.91725 0.74484 0.96219 0.91825 0.94080 0.98883 0.92374 0.85516 0.83165 0.82023 0.83014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 8.90 71.98 0.64 -1.07 16 2 C -0.07 -1.26 2.89 -12.29 -0.04 -1.30 16 3 H 0.12 2.06 7.13 -2.39 -0.02 2.04 16 4 C 0.52 13.86 7.02 87.66 0.62 14.48 16 5 O -0.57 -20.38 14.68 -3.05 -0.04 -20.42 16 6 N -0.68 -16.66 5.46 -442.53 -2.41 -19.07 16 7 C 0.11 3.74 5.92 44.99 0.27 4.01 16 8 H 0.10 4.06 7.40 -2.39 -0.02 4.04 16 9 C -0.16 -5.33 7.34 -8.70 -0.06 -5.39 16 10 H 0.14 3.78 8.14 -2.39 -0.02 3.77 16 11 C 0.15 6.23 7.10 87.73 0.62 6.86 16 12 N -0.62 -32.25 3.38 -681.43 -2.30 -34.55 16 13 C -0.24 -13.68 10.35 84.04 0.87 -12.81 16 14 H 0.08 4.45 7.85 -2.91 -0.02 4.43 16 15 C -0.06 -3.63 5.40 84.86 0.46 -3.17 16 16 N -0.95 -57.78 10.88 21.65 0.24 -57.54 16 17 Si 0.98 45.53 29.56 68.60 2.03 47.55 16 18 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 19 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 21 C 0.19 9.51 5.69 86.53 0.49 10.00 16 22 C -0.18 -6.73 6.98 -9.89 -0.07 -6.80 16 23 H 0.13 4.03 8.14 -2.39 -0.02 4.01 16 24 C -0.12 -2.51 4.40 -19.82 -0.09 -2.60 16 25 C -0.07 -1.48 7.93 22.26 0.18 -1.31 16 26 C -0.13 -2.17 10.04 22.27 0.22 -1.94 16 27 C -0.09 -1.26 10.04 22.26 0.22 -1.04 16 28 C -0.16 -2.76 10.03 22.31 0.22 -2.54 16 29 C 0.08 1.70 7.25 22.38 0.16 1.87 16 30 F -0.15 -3.36 16.19 44.97 0.73 -2.63 16 31 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.08 0.78 7.56 -2.39 -0.02 0.76 16 33 H 0.06 0.86 7.39 -2.39 -0.02 0.84 16 34 H 0.42 7.18 8.24 -92.71 -0.76 6.42 16 35 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 38 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 39 H 0.06 3.27 6.53 -2.39 -0.02 3.25 16 40 H 0.13 2.57 7.52 -2.91 -0.02 2.55 16 41 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 42 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 43 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -74.01 359.72 3.22 -70.80 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: 0.27 Total: 18.62 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: 4.72 Total: -2.76 kcal Atomic # 7 Polarization: -106.68 SS G_CDS: -4.48 Total: -111.16 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.04 Total: -20.42 kcal Atomic # 9 Polarization: -3.36 SS G_CDS: 0.73 Total: -2.63 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -74.01 3.22 -70.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962071679.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.868 kcal (2) G-P(sol) polarization free energy of solvation -74.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds