Wall clock time and date at job start Tue Mar 31 2020 13:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.46570 * 2 1 4 4 C 1.50699 * 109.47044 * 240.00227 * 2 1 3 5 5 O 1.21282 * 119.99550 * 239.99596 * 4 2 1 6 6 N 1.34777 * 120.00010 * 59.99834 * 4 2 1 7 7 C 1.46498 * 119.99598 * 179.97438 * 6 4 2 8 8 H 1.08998 * 115.51831 * 9.59249 * 7 6 4 9 9 C 1.57267 * 116.90283 * 223.09203 * 7 6 4 10 10 H 1.09000 * 120.67598 * 3.43806 * 9 7 6 11 11 C 1.54386 * 118.11081 * 161.54796 * 9 7 6 12 12 N 1.48146 * 104.71862 * 86.05945 * 11 9 7 13 13 C 1.36934 * 127.83756 * 140.35768 * 12 11 9 14 14 H 1.07999 * 119.99882 * 195.61312 * 13 12 11 15 15 C 1.38816 * 120.00098 * 15.61148 * 13 12 11 16 16 N 1.31612 * 120.00108 * 9.10877 * 15 13 12 17 17 Si 1.86803 * 119.99782 * 189.10834 * 15 13 12 18 18 H 1.48498 * 109.47395 * 59.99868 * 17 15 13 19 19 H 1.48499 * 109.46650 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47145 * 299.99680 * 17 15 13 21 21 C 1.48143 * 104.32403 * 320.35279 * 12 11 9 22 22 C 1.53002 * 117.43863 * 154.99894 * 7 6 4 23 23 H 1.09006 * 119.54462 * 354.28980 * 22 7 6 24 24 C 1.50693 * 109.46839 * 120.00120 * 2 1 3 25 25 C 1.38275 * 119.98481 * 239.99710 * 24 2 1 26 26 C 1.38226 * 120.04936 * 180.02562 * 25 24 2 27 27 C 1.38215 * 120.02750 * 0.02562 * 26 25 24 28 28 C 1.38439 * 119.97671 * 0.02562 * 27 26 25 29 29 F 1.35097 * 120.02849 * 180.02562 * 28 27 26 30 30 C 1.38175 * 119.99200 * 59.72933 * 24 2 1 31 31 H 1.09007 * 109.46749 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47387 * 299.99845 * 1 2 3 33 33 H 1.08994 * 109.47293 * 60.00572 * 1 2 3 34 34 H 0.96999 * 119.99987 * 0.02562 * 6 4 2 35 35 H 1.08993 * 110.40909 * 327.21121 * 11 9 7 36 36 H 1.09006 * 110.40453 * 204.89825 * 11 9 7 37 37 H 0.96998 * 120.00174 * 179.97438 * 16 15 13 38 38 H 1.08994 * 110.40818 * 158.37311 * 21 12 11 39 39 H 1.08999 * 110.40690 * 280.80712 * 21 12 11 40 40 H 1.07999 * 119.97300 * 359.97438 * 25 24 2 41 41 H 1.08007 * 119.98251 * 179.97438 * 26 25 24 42 42 H 1.07999 * 120.01317 * 179.97438 * 27 26 25 43 43 H 1.07996 * 120.01187 * 0.02562 * 30 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7297 -1.6964 -1.1192 6 7 1.7067 -0.2499 -2.4546 7 6 2.1956 -0.9402 -3.6507 8 1 2.6758 -1.9026 -3.4741 9 6 2.7321 -0.0393 -4.8229 10 1 2.7853 1.0437 -4.7123 11 6 3.6357 -0.6951 -5.8891 12 7 2.6946 -1.2664 -6.8804 13 6 2.8167 -1.2792 -8.2442 14 1 1.9574 -1.4969 -8.8612 15 6 4.0448 -1.0125 -8.8338 16 7 5.1268 -0.9246 -8.0896 17 14 4.1617 -0.7782 -10.6833 18 1 3.3111 0.3684 -11.0919 19 1 5.5725 -0.5075 -11.0597 20 1 3.6948 -2.0100 -11.3688 21 6 1.5916 -1.8207 -6.0614 22 6 1.3820 -0.7837 -4.9370 23 1 0.4299 -0.2536 -4.9097 24 6 2.0323 -0.7104 1.2304 25 6 2.8273 -0.0382 2.1404 26 6 3.2891 -0.6887 3.2692 27 6 2.9572 -2.0122 3.4893 28 6 2.1622 -2.6866 2.5784 29 9 1.8367 -3.9801 2.7927 30 6 1.6937 -2.0316 1.4517 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5137 -0.8900 34 1 1.1494 0.5390 -2.5435 35 1 4.2412 -1.4832 -5.4417 36 1 4.2742 0.0534 -6.3586 37 1 5.9850 -0.7386 -8.5015 38 1 0.6864 -1.9201 -6.6604 39 1 1.8778 -2.7846 -5.6408 40 1 3.0882 0.9957 1.9686 41 1 3.9104 -0.1627 3.9791 42 1 3.3185 -2.5203 4.3711 43 1 1.0696 -2.5554 0.7428 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962656330.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:35 Heat of formation + Delta-G solvation = -17.499492 kcal Electronic energy + Delta-G solvation = -25649.220359 eV Core-core repulsion = 21802.655588 eV Total energy + Delta-G solvation = -3846.564771 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.90504 -41.44193 -40.22612 -39.27134 -36.04346 -35.25034 -34.18779 -32.05731 -31.47918 -30.32879 -28.93543 -27.62685 -25.87893 -24.14492 -23.57335 -22.74693 -21.95482 -21.00718 -20.79257 -18.88101 -18.48939 -18.18802 -17.51788 -17.11930 -17.00236 -16.73837 -16.59639 -16.02657 -15.74036 -15.31689 -14.97417 -14.75983 -14.67848 -14.63031 -14.27369 -13.77718 -13.61244 -13.32869 -13.20380 -13.12296 -12.92558 -12.87771 -12.76468 -12.67781 -12.25155 -12.15948 -12.05810 -11.90224 -11.85424 -11.64793 -10.93044 -10.79863 -10.69647 -9.88702 -9.64724 -9.60977 -8.93896 -7.92536 -5.30048 0.17985 0.28538 1.46253 1.49561 1.52914 1.56542 1.95733 2.47923 2.67899 2.79807 3.22325 3.27811 3.52161 3.55611 3.71755 3.80029 3.89173 3.94046 4.08960 4.12821 4.15187 4.30258 4.33231 4.38207 4.48942 4.53642 4.76114 4.82334 4.88285 4.90638 4.97773 4.99818 5.12394 5.19226 5.27050 5.27854 5.37722 5.42170 5.44588 5.52460 5.55124 5.63661 5.96375 6.15389 6.53992 6.98712 7.24259 7.66119 8.44590 9.21153 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.027039 B = 0.002321 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.274320 B =12060.205916 C =12181.784574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.060 4.060 3 H 0.145 0.855 4 C 0.515 3.485 5 O -0.578 6.578 6 N -0.679 5.679 7 C 0.116 3.884 8 H 0.103 0.897 9 C -0.186 4.186 10 H 0.128 0.872 11 C 0.187 3.813 12 N -0.617 5.617 13 C -0.243 4.243 14 H 0.084 0.916 15 C -0.064 4.064 16 N -0.949 5.949 17 Si 0.984 3.016 18 H -0.273 1.273 19 H -0.295 1.295 20 H -0.275 1.275 21 C 0.145 3.855 22 C -0.155 4.155 23 H 0.141 0.859 24 C -0.051 4.051 25 C -0.120 4.120 26 C -0.090 4.090 27 C -0.159 4.159 28 C 0.065 3.935 29 F -0.156 7.156 30 C -0.138 4.138 31 H 0.048 0.952 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.420 0.580 35 H -0.010 1.010 36 H 0.058 0.942 37 H 0.250 0.750 38 H 0.066 0.934 39 H 0.015 0.985 40 H 0.161 0.839 41 H 0.166 0.834 42 H 0.150 0.850 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.631 7.798 24.217 27.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.081 4.081 3 H 0.163 0.837 4 C 0.303 3.697 5 O -0.457 6.457 6 N -0.329 5.329 7 C 0.008 3.992 8 H 0.120 0.880 9 C -0.207 4.207 10 H 0.145 0.855 11 C 0.061 3.939 12 N -0.341 5.341 13 C -0.371 4.371 14 H 0.102 0.898 15 C -0.258 4.258 16 N -0.597 5.597 17 Si 0.811 3.189 18 H -0.199 1.199 19 H -0.221 1.221 20 H -0.201 1.201 21 C 0.020 3.980 22 C -0.175 4.175 23 H 0.158 0.842 24 C -0.052 4.052 25 C -0.137 4.137 26 C -0.108 4.108 27 C -0.177 4.177 28 C 0.046 3.954 29 F -0.135 7.135 30 C -0.157 4.157 31 H 0.067 0.933 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.258 0.742 35 H 0.007 0.993 36 H 0.076 0.924 37 H 0.059 0.941 38 H 0.084 0.916 39 H 0.033 0.967 40 H 0.179 0.821 41 H 0.184 0.816 42 H 0.168 0.832 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -10.016 7.061 24.094 27.032 hybrid contribution 0.308 -0.546 -1.297 1.441 sum -9.708 6.515 22.797 25.620 Atomic orbital electron populations 1.21859 0.89821 1.02994 1.05075 1.20395 0.99307 1.01094 0.87343 0.83715 1.21208 0.79217 0.84137 0.85163 1.90749 1.39415 1.28380 1.87128 1.45128 1.52577 1.31724 1.03449 1.22037 1.00466 0.96271 0.80400 0.87951 1.25142 0.98103 0.98696 0.98780 0.85463 1.20769 0.90980 0.94834 0.87269 1.45485 1.21714 1.65314 1.01587 1.19379 0.94627 1.42120 0.81021 0.89816 1.25806 0.94713 1.02474 1.02783 1.70104 0.98371 1.55422 1.35793 0.85089 0.76316 0.78419 0.79101 1.19893 1.22083 1.20128 1.21295 0.91964 0.93520 0.91257 1.24247 0.96556 1.01764 0.94973 0.84177 1.19383 0.97414 0.92796 0.95615 1.21515 0.96536 1.01833 0.93849 1.21378 0.98506 0.93052 0.97879 1.21443 0.99564 0.96606 1.00110 1.18032 1.01079 0.78825 0.97504 1.91449 1.91505 1.35569 1.94967 1.20947 1.02404 0.95988 0.96313 0.93260 0.89032 0.89427 0.74227 0.99251 0.92399 0.94096 0.91564 0.96675 0.82120 0.81620 0.83248 0.86671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.90 71.98 0.64 -0.79 16 2 C -0.06 -0.89 2.90 -12.29 -0.04 -0.93 16 3 H 0.15 1.16 7.87 -2.39 -0.02 1.14 16 4 C 0.51 12.65 7.03 87.66 0.62 13.27 16 5 O -0.58 -20.59 14.69 -3.04 -0.04 -20.64 16 6 N -0.68 -15.19 5.46 -435.44 -2.38 -17.57 16 7 C 0.12 3.70 6.19 46.50 0.29 3.99 16 8 H 0.10 4.02 7.40 -2.39 -0.02 4.00 16 9 C -0.19 -6.80 7.26 -8.28 -0.06 -6.86 16 10 H 0.13 4.08 8.14 -2.39 -0.02 4.06 16 11 C 0.19 9.44 5.72 86.53 0.49 9.94 16 12 N -0.62 -32.26 3.38 -688.16 -2.33 -34.58 16 13 C -0.24 -13.68 10.35 84.03 0.87 -12.81 16 14 H 0.08 4.46 7.84 -2.91 -0.02 4.43 16 15 C -0.06 -3.67 5.40 84.86 0.46 -3.21 16 16 N -0.95 -57.96 10.86 21.65 0.24 -57.73 16 17 Si 0.98 45.52 29.56 68.60 2.03 47.55 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 19 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 20 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 21 C 0.15 6.05 7.03 86.54 0.61 6.65 16 22 C -0.15 -5.01 6.91 -9.78 -0.07 -5.08 16 23 H 0.14 3.53 8.14 -2.38 -0.02 3.51 16 24 C -0.05 -0.96 4.39 -19.87 -0.09 -1.05 16 25 C -0.12 -1.67 9.67 22.28 0.22 -1.46 16 26 C -0.09 -1.21 10.04 22.26 0.22 -0.98 16 27 C -0.16 -2.81 10.03 22.31 0.22 -2.58 16 28 C 0.06 1.54 7.30 22.38 0.16 1.70 16 29 F -0.16 -4.17 17.27 44.97 0.78 -3.39 16 30 C -0.14 -3.28 7.92 22.31 0.18 -3.10 16 31 H 0.05 0.68 7.37 -2.38 -0.02 0.66 16 32 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.09 0.56 7.56 -2.39 -0.02 0.54 16 34 H 0.42 5.97 8.24 -92.71 -0.76 5.21 16 35 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 36 H 0.06 3.27 6.51 -2.38 -0.02 3.25 16 37 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 38 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 39 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.16 1.18 7.94 -2.91 -0.02 1.16 16 41 H 0.17 1.06 8.06 -2.91 -0.02 1.04 16 42 H 0.15 2.01 8.06 -2.91 -0.02 1.98 16 43 H 0.12 3.00 7.51 -2.91 -0.02 2.98 16 Total: -1.00 -77.75 361.15 3.29 -74.46 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.27 Total: 15.20 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: 4.73 Total: -3.31 kcal Atomic # 7 Polarization: -105.41 SS G_CDS: -4.47 Total: -109.88 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.04 Total: -20.64 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 0.78 Total: -3.39 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -77.75 3.29 -74.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962656330.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.965 kcal (2) G-P(sol) polarization free energy of solvation -77.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds