Wall clock time and date at job start Tue Mar 31 2020 13:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47139 * 2 1 4 4 C 1.50698 * 109.47471 * 239.99649 * 2 1 3 5 5 O 1.21279 * 119.99965 * 326.24041 * 4 2 1 6 6 N 1.34771 * 119.99731 * 146.52371 * 4 2 1 7 7 C 1.47866 * 126.95091 * 4.64827 * 6 4 2 8 8 C 1.55994 * 105.11958 * 181.88016 * 7 6 4 9 9 H 1.08998 * 116.81483 * 159.41465 * 8 7 6 10 10 C 1.57089 * 99.47507 * 33.16052 * 8 7 6 11 11 C 1.49297 * 126.94110 * 184.97015 * 6 4 2 12 12 H 1.09001 * 116.15438 * 16.68980 * 11 6 4 13 13 C 1.56022 * 104.09041 * 246.69304 * 11 6 4 14 14 N 1.47865 * 105.10157 * 288.76953 * 13 11 6 15 15 C 1.36938 * 126.94162 * 181.98127 * 14 13 11 16 16 H 1.08001 * 119.99919 * 174.15978 * 15 14 13 17 17 C 1.38813 * 120.00400 * 354.16569 * 15 14 13 18 18 N 1.31620 * 119.99784 * 5.92318 * 17 15 14 19 19 Si 1.86799 * 120.00264 * 185.92354 * 17 15 14 20 20 H 1.48501 * 109.46845 * 94.98967 * 19 17 15 21 21 H 1.48500 * 109.46924 * 214.98788 * 19 17 15 22 22 H 1.48503 * 109.47157 * 334.98866 * 19 17 15 23 23 C 1.50705 * 109.46830 * 119.99352 * 2 1 3 24 24 C 1.38221 * 120.01126 * 59.72931 * 23 2 1 25 25 C 1.38227 * 120.02508 * 179.71700 * 24 23 2 26 26 C 1.38272 * 120.04944 * 0.55656 * 25 24 23 27 27 C 1.38176 * 120.02244 * 359.72139 * 26 25 24 28 28 C 1.38437 * 120.01486 * 240.00361 * 23 2 1 29 29 F 1.35098 * 120.02553 * 359.97438 * 28 23 2 30 30 H 1.09001 * 109.46756 * 184.64992 * 1 2 3 31 31 H 1.08994 * 109.47316 * 304.65020 * 1 2 3 32 32 H 1.09002 * 109.46541 * 64.65755 * 1 2 3 33 33 H 1.09009 * 110.31064 * 300.91388 * 7 6 4 34 34 H 1.08994 * 110.31352 * 63.09160 * 7 6 4 35 35 H 1.08996 * 112.36872 * 191.51012 * 10 8 7 36 36 H 1.09001 * 112.44350 * 64.09941 * 10 8 7 37 37 H 1.09010 * 110.31428 * 47.67074 * 13 11 6 38 38 H 1.08991 * 110.31615 * 169.85731 * 13 11 6 39 39 H 0.96995 * 120.00243 * 180.02562 * 18 17 15 40 40 H 1.08001 * 119.98598 * 0.02562 * 24 23 2 41 41 H 1.07996 * 119.97512 * 180.29982 * 25 24 23 42 42 H 1.07997 * 119.98466 * 179.74396 * 26 25 24 43 43 H 1.08002 * 120.00731 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7105 -1.2304 5 8 1.4114 -1.6474 -1.6857 6 7 3.1750 -0.3083 -1.8214 7 6 4.1013 0.7407 -1.3438 8 6 5.2184 0.8221 -2.4295 9 1 5.8043 1.7405 -2.4642 10 6 4.3645 0.4866 -3.7047 11 6 3.7577 -0.8273 -3.0942 12 1 3.0832 -1.3953 -3.7349 13 6 5.0727 -1.5383 -2.6477 14 7 5.9899 -0.4448 -2.2611 15 6 7.2851 -0.5691 -1.8344 16 1 7.8864 0.3128 -1.6698 17 6 7.8254 -1.8286 -1.6136 18 7 7.1343 -2.9048 -1.9244 19 14 9.5330 -1.9961 -0.8752 20 1 9.4213 -2.1752 0.5947 21 1 10.2148 -3.1751 -1.4672 22 1 10.3205 -0.7711 -1.1662 23 6 2.0323 -0.7103 1.2306 24 6 1.6939 -2.0319 1.4525 25 6 2.1592 -2.6854 2.5782 26 6 2.9542 -2.0147 3.4892 27 6 3.2890 -0.6917 3.2723 28 6 2.8281 -0.0377 2.1421 29 9 3.1554 1.2555 1.9287 30 1 -0.3633 -1.0243 0.0833 31 1 -0.3633 0.5843 0.8453 32 1 -0.3632 0.4399 -0.9288 33 1 3.5815 1.6952 -1.2606 34 1 4.5303 0.4575 -0.3826 35 1 4.9846 0.2899 -4.5792 36 1 3.6034 1.2405 -3.9060 37 1 4.8800 -2.1898 -1.7952 38 1 5.4932 -2.1104 -3.4747 39 1 7.5116 -3.7849 -1.7697 40 1 1.0697 -2.5557 0.7436 41 1 1.8983 -3.7195 2.7483 42 1 3.3138 -2.5251 4.3704 43 1 3.9103 -0.1682 3.9838 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032688715.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:08 Heat of formation + Delta-G solvation = -16.011375 kcal Electronic energy + Delta-G solvation = -27968.678848 eV Core-core repulsion = 24122.178606 eV Total energy + Delta-G solvation = -3846.500241 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.96035 -41.78202 -40.36743 -39.16674 -35.50574 -35.18346 -33.22775 -31.54600 -30.81153 -30.36594 -30.26384 -26.99907 -26.16879 -25.02410 -23.79458 -23.21977 -21.55872 -21.39770 -19.95194 -18.92983 -18.70340 -18.12584 -17.42562 -17.36008 -16.99020 -16.66765 -16.21153 -16.04472 -15.70125 -15.21258 -14.97898 -14.94592 -14.56736 -14.19104 -13.86919 -13.71091 -13.58466 -13.38154 -13.25786 -13.10403 -13.03980 -12.86450 -12.83147 -12.73841 -12.37515 -12.16579 -12.13546 -12.05266 -11.95755 -11.87822 -11.55679 -10.99079 -10.72586 -9.95513 -9.66172 -9.56690 -8.91366 -7.86676 -5.21615 0.09127 0.19425 1.44471 1.45921 1.54612 1.55643 1.95457 2.46680 2.57788 3.21418 3.29520 3.35130 3.48627 3.52349 3.72386 3.80799 3.86286 3.96187 4.01346 4.11697 4.17388 4.20941 4.33420 4.38233 4.52874 4.64580 4.72944 4.79286 4.85757 4.89897 4.91648 4.99937 5.03496 5.09603 5.11284 5.20431 5.22463 5.32950 5.41172 5.42847 5.53577 5.63495 5.88546 6.08474 6.62333 7.01481 7.10547 7.69297 8.40446 9.24851 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.011728 B = 0.005661 C = 0.004599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.862138 B = 4945.166865 C = 6087.259534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.061 4.061 3 H 0.107 0.893 4 C 0.533 3.467 5 O -0.581 6.581 6 N -0.608 5.608 7 C 0.095 3.905 8 C 0.134 3.866 9 H 0.135 0.865 10 C -0.128 4.128 11 C 0.099 3.901 12 H 0.117 0.883 13 C 0.190 3.810 14 N -0.615 5.615 15 C -0.231 4.231 16 H 0.094 0.906 17 C -0.069 4.069 18 N -0.954 5.954 19 Si 0.973 3.027 20 H -0.293 1.293 21 H -0.300 1.300 22 H -0.260 1.260 23 C -0.122 4.122 24 C -0.094 4.094 25 C -0.132 4.132 26 C -0.089 4.089 27 C -0.159 4.159 28 C 0.089 3.911 29 F -0.140 7.140 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.041 0.959 35 H 0.083 0.917 36 H 0.104 0.896 37 H -0.004 1.004 38 H 0.015 0.985 39 H 0.244 0.756 40 H 0.127 0.873 41 H 0.152 0.848 42 H 0.164 0.836 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.875 8.875 7.754 16.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.082 4.082 3 H 0.125 0.875 4 C 0.322 3.678 5 O -0.462 6.462 6 N -0.340 5.340 7 C -0.030 4.030 8 C 0.028 3.972 9 H 0.153 0.847 10 C -0.167 4.167 11 C -0.004 4.004 12 H 0.134 0.866 13 C 0.064 3.936 14 N -0.340 5.340 15 C -0.360 4.360 16 H 0.111 0.889 17 C -0.261 4.261 18 N -0.603 5.603 19 Si 0.802 3.198 20 H -0.220 1.220 21 H -0.227 1.227 22 H -0.185 1.185 23 C -0.124 4.124 24 C -0.112 4.112 25 C -0.150 4.150 26 C -0.107 4.107 27 C -0.178 4.178 28 C 0.070 3.930 29 F -0.119 7.119 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.114 0.886 34 H 0.060 0.940 35 H 0.102 0.898 36 H 0.123 0.877 37 H 0.014 0.986 38 H 0.033 0.967 39 H 0.053 0.947 40 H 0.145 0.855 41 H 0.169 0.831 42 H 0.182 0.818 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -12.064 8.262 7.606 16.482 hybrid contribution 1.221 -0.725 0.244 1.441 sum -10.843 7.538 7.850 15.363 Atomic orbital electron populations 1.21638 0.89643 1.03274 1.03325 1.20178 0.99530 0.99783 0.88706 0.87506 1.20532 0.79198 0.83353 0.84707 1.90616 1.58840 1.29989 1.66730 1.49320 1.21461 1.38635 1.24573 1.23135 0.91199 0.90284 0.98356 1.23585 0.90208 0.91099 0.92317 0.84745 1.24073 0.99270 0.95645 0.97704 1.24202 0.93059 0.97486 0.85634 0.86557 1.21471 0.87084 0.89374 0.95648 1.45461 1.09647 1.01653 1.77191 1.19513 0.87476 0.92925 1.36083 0.88856 1.25660 1.02388 0.95391 1.02698 1.70171 1.38913 0.97107 1.54078 0.85122 0.79664 0.77414 0.77575 1.22010 1.22665 1.18464 1.19561 1.01013 0.95849 0.95967 1.21132 0.99178 0.93043 0.97864 1.21546 0.98083 1.01406 0.93926 1.21432 0.95964 0.93138 1.00125 1.21458 1.02357 0.96660 0.97288 1.17716 0.99228 0.79286 0.96815 1.91453 1.91089 1.34432 1.94900 0.92088 0.89637 0.91304 0.88649 0.94009 0.89828 0.87725 0.98554 0.96704 0.94724 0.85462 0.83058 0.81837 0.82719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.86 8.64 71.98 0.62 -2.24 16 2 C -0.06 -1.77 2.53 -12.28 -0.03 -1.80 16 3 H 0.11 2.84 6.07 -2.39 -0.01 2.83 16 4 C 0.53 19.64 6.55 87.66 0.57 20.21 16 5 O -0.58 -24.64 16.28 -3.03 -0.05 -24.69 16 6 N -0.61 -22.74 2.95 -768.37 -2.26 -25.01 16 7 C 0.09 3.24 5.71 87.15 0.50 3.74 16 8 C 0.13 4.81 5.52 46.93 0.26 5.07 16 9 H 0.14 4.06 8.14 -2.39 -0.02 4.04 16 10 C -0.13 -4.05 6.80 33.46 0.23 -3.82 16 11 C 0.10 3.91 5.23 46.93 0.25 4.16 16 12 H 0.12 4.47 8.09 -2.39 -0.02 4.45 16 13 C 0.19 9.69 4.77 87.17 0.42 10.11 16 14 N -0.62 -30.16 3.03 -648.59 -1.96 -32.12 16 15 C -0.23 -12.46 10.36 84.03 0.87 -11.59 16 16 H 0.09 4.67 7.84 -2.91 -0.02 4.65 16 17 C -0.07 -3.90 5.49 84.86 0.47 -3.43 16 18 N -0.95 -58.74 10.60 21.65 0.23 -58.51 16 19 Si 0.97 45.70 29.56 68.60 2.03 47.73 16 20 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 21 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 22 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 23 C -0.12 -3.71 4.78 -19.82 -0.09 -3.81 16 24 C -0.09 -2.78 8.76 22.26 0.19 -2.59 16 25 C -0.13 -3.26 10.05 22.28 0.22 -3.03 16 26 C -0.09 -2.00 10.04 22.26 0.22 -1.77 16 27 C -0.16 -3.98 10.03 22.31 0.22 -3.76 16 28 C 0.09 2.59 7.25 22.37 0.16 2.76 16 29 F -0.14 -4.07 16.19 44.97 0.73 -3.34 16 30 H 0.06 1.54 7.08 -2.39 -0.02 1.52 16 31 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.10 2.50 7.74 -2.38 -0.02 2.49 16 34 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 36 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 37 H 0.00 -0.23 7.54 -2.38 -0.02 -0.25 16 38 H 0.01 0.84 7.62 -2.39 -0.02 0.83 16 39 H 0.24 14.77 8.31 -92.71 -0.77 14.00 16 40 H 0.13 3.92 7.11 -2.91 -0.02 3.90 16 41 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 42 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 43 H 0.16 3.13 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -72.78 352.85 4.80 -67.98 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 1.01 Total: 19.76 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 5.08 Total: 8.20 kcal Atomic # 7 Polarization: -111.64 SS G_CDS: -4.00 Total: -115.64 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.05 Total: -24.69 kcal Atomic # 9 Polarization: -4.07 SS G_CDS: 0.73 Total: -3.34 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -72.78 4.80 -67.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032688715.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.967 kcal (2) G-P(sol) polarization free energy of solvation -72.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds