Wall clock time and date at job start Tue Mar 31 2020 13:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09009 * 109.47002 * 2 1 4 4 C 1.50696 * 109.47614 * 120.00133 * 2 1 3 5 5 O 1.21284 * 119.99303 * 85.99190 * 4 2 1 6 6 N 1.34772 * 120.00147 * 265.72736 * 4 2 1 7 7 C 1.47870 * 126.94395 * 354.89439 * 6 4 2 8 8 C 1.56000 * 105.11298 * 181.88221 * 7 6 4 9 9 H 1.09004 * 116.16407 * 159.05917 * 8 7 6 10 10 C 1.57086 * 99.47733 * 33.16788 * 8 7 6 11 11 C 1.49290 * 126.94326 * 175.22471 * 6 4 2 12 12 H 1.08996 * 116.15613 * 16.68913 * 11 6 4 13 13 C 1.56019 * 104.08670 * 246.68947 * 11 6 4 14 14 N 1.49058 * 105.20960 * 288.09392 * 13 11 6 15 15 C 1.36941 * 127.54678 * 181.97774 * 14 13 11 16 16 H 1.07995 * 120.00316 * 181.26926 * 15 14 13 17 17 C 1.38819 * 119.99645 * 1.26078 * 15 14 13 18 18 N 1.31611 * 119.99821 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99770 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47303 * 60.00141 * 19 17 15 21 21 H 1.48499 * 109.47161 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47271 * 300.00340 * 19 17 15 23 23 C 1.50698 * 109.46844 * 240.00616 * 2 1 3 24 24 C 1.38270 * 119.98490 * 299.72265 * 23 2 1 25 25 C 1.38233 * 120.04684 * 179.73317 * 24 23 2 26 26 C 1.38218 * 120.02722 * 0.54022 * 25 24 23 27 27 C 1.38433 * 119.97525 * 359.73487 * 26 25 24 28 28 F 1.35099 * 120.02778 * 180.02562 * 27 26 25 29 29 C 1.38176 * 119.99057 * 119.99853 * 23 2 1 30 30 H 1.08998 * 109.47550 * 56.10426 * 1 2 3 31 31 H 1.08995 * 109.47283 * 176.10435 * 1 2 3 32 32 H 1.08998 * 109.47069 * 296.10642 * 1 2 3 33 33 H 1.08994 * 110.31649 * 300.91962 * 7 6 4 34 34 H 1.09005 * 110.31111 * 63.10340 * 7 6 4 35 35 H 1.08999 * 112.36641 * 191.51448 * 10 8 7 36 36 H 1.08999 * 112.36639 * 64.07238 * 10 8 7 37 37 H 1.08999 * 110.31628 * 47.67927 * 13 11 6 38 38 H 1.09007 * 110.31379 * 169.85674 * 13 11 6 39 39 H 0.97003 * 119.99681 * 179.97438 * 18 17 15 40 40 H 1.07998 * 119.97583 * 359.97438 * 24 23 2 41 41 H 1.08001 * 119.98162 * 180.27568 * 25 24 23 42 42 H 1.08002 * 120.01005 * 179.75100 * 26 25 24 43 43 H 1.08005 * 120.01098 * 359.97438 * 29 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.1653 -1.9159 1.2226 6 7 2.3391 -0.0056 2.3375 7 6 2.3416 1.4660 2.4818 8 6 2.8164 1.7304 3.9441 9 1 3.2211 2.7222 4.1462 10 6 3.8039 0.5213 4.1181 11 6 2.7514 -0.5528 3.6639 12 1 3.0811 -1.5916 3.6736 13 6 1.5710 -0.1781 4.6128 14 7 1.6781 1.2959 4.8070 15 6 0.8883 2.0940 5.5909 16 1 1.0633 3.1591 5.6262 17 6 -0.1375 1.5338 6.3400 18 7 -0.3504 0.2358 6.2971 19 14 -1.2154 2.6225 7.4088 20 1 -1.9005 3.6286 6.5582 21 1 -2.2287 1.7875 8.1024 22 1 -0.3734 3.3168 8.4159 23 6 2.0322 -0.7103 -1.2305 24 6 1.7027 -2.0357 -1.4463 25 6 2.1581 -2.6869 -2.5774 26 6 2.9528 -2.0169 -3.4884 27 6 3.2881 -0.6915 -3.2706 28 9 4.0643 -0.0355 -4.1607 29 6 2.8266 -0.0385 -2.1399 30 1 -0.3634 0.5731 -0.8530 31 1 -0.3633 -1.0252 -0.0698 32 1 -0.3633 0.4522 0.9228 33 1 3.0344 1.9149 1.7701 34 1 1.3369 1.8624 2.3347 35 1 4.1147 0.3853 5.1539 36 1 4.6554 0.5803 3.4401 37 1 0.6181 -0.4403 4.1532 38 1 1.6813 -0.6840 5.5720 39 1 -1.0670 -0.1557 6.8209 40 1 1.0858 -2.5614 -0.7325 41 1 1.8964 -3.7209 -2.7470 42 1 3.3118 -2.5271 -4.3700 43 1 3.0872 0.9956 -1.9692 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032792014.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:19 Heat of formation + Delta-G solvation = 0.322994 kcal Electronic energy + Delta-G solvation = -26933.421169 eV Core-core repulsion = 23087.629239 eV Total energy + Delta-G solvation = -3845.791930 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.97267 -40.41973 -39.28631 -37.67145 -34.08949 -33.56318 -31.52794 -30.76387 -29.52203 -28.95151 -28.50324 -25.29422 -24.86814 -23.52996 -22.82375 -22.05604 -20.18466 -19.86393 -18.48138 -17.51221 -17.12391 -16.57817 -16.26621 -15.99518 -15.69643 -15.60422 -14.90639 -14.63865 -14.41676 -14.01148 -13.72682 -13.51517 -13.32933 -13.08416 -12.56224 -12.33534 -12.11390 -12.09019 -11.92023 -11.79301 -11.67557 -11.40575 -11.31322 -11.03956 -10.95510 -10.87620 -10.77789 -10.61232 -10.31814 -10.13010 -9.66356 -9.49373 -8.99844 -8.75242 -8.69202 -8.05388 -6.97840 -5.81340 -3.15563 1.06647 1.13830 2.95671 3.25164 3.34697 3.39181 3.41081 3.60836 4.11624 4.37899 4.50361 4.62247 4.78470 4.93074 5.06345 5.09241 5.15389 5.18771 5.23150 5.30499 5.36984 5.52653 5.59419 5.66169 5.72269 5.74082 5.83099 5.86217 5.98729 6.01783 6.08816 6.18732 6.24569 6.30797 6.37439 6.43326 6.49621 6.55608 6.65133 6.82353 7.35895 7.40986 7.65138 8.01845 8.05553 8.52253 9.03824 9.66282 10.36164 11.31397 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.023851 B = 0.003145 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.658631 B = 8900.247149 C = 9045.286512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.068 4.068 3 H 0.096 0.904 4 C 0.536 3.464 5 O -0.550 6.550 6 N -0.604 5.604 7 C 0.080 3.920 8 C 0.140 3.860 9 H 0.105 0.895 10 C -0.152 4.152 11 C 0.099 3.901 12 H 0.114 0.886 13 C 0.174 3.826 14 N -0.596 5.596 15 C -0.232 4.232 16 H 0.081 0.919 17 C -0.005 4.005 18 N -0.919 5.919 19 Si 0.913 3.087 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.284 1.284 23 C -0.042 4.042 24 C -0.090 4.090 25 C -0.096 4.096 26 C -0.156 4.156 27 C 0.089 3.911 28 F -0.144 7.144 29 C -0.147 4.147 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.064 0.936 37 H 0.046 0.954 38 H 0.058 0.942 39 H 0.255 0.745 40 H 0.138 0.862 41 H 0.132 0.868 42 H 0.131 0.869 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.910 -0.993 -15.788 16.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.090 4.090 3 H 0.114 0.886 4 C 0.324 3.676 5 O -0.428 6.428 6 N -0.337 5.337 7 C -0.045 4.045 8 C 0.031 3.969 9 H 0.123 0.877 10 C -0.192 4.192 11 C -0.004 4.004 12 H 0.132 0.868 13 C 0.049 3.951 14 N -0.321 5.321 15 C -0.360 4.360 16 H 0.098 0.902 17 C -0.202 4.202 18 N -0.566 5.566 19 Si 0.743 3.257 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.211 1.211 23 C -0.043 4.043 24 C -0.108 4.108 25 C -0.114 4.114 26 C -0.175 4.175 27 C 0.070 3.930 28 F -0.122 7.122 29 C -0.166 4.166 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.156 0.844 41 H 0.150 0.850 42 H 0.149 0.851 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.737 -1.671 -15.685 16.785 hybrid contribution -0.510 0.738 0.351 0.963 sum 5.227 -0.933 -15.334 16.227 Atomic orbital electron populations 1.21706 0.91191 1.03266 1.03162 1.20227 0.98320 0.99836 0.90572 0.88572 1.19828 0.77502 0.87154 0.83130 1.90646 1.54827 1.14142 1.83214 1.49215 1.65671 1.07979 1.10830 1.23327 1.01210 0.79738 1.00226 1.23140 0.89204 0.96495 0.88028 0.87677 1.24177 0.96313 0.97387 1.01305 1.24345 0.97071 0.97649 0.81315 0.86843 1.22101 0.93152 0.84221 0.95642 1.45492 1.33350 1.03240 1.49971 1.18993 1.08568 0.90062 1.18347 0.90153 1.24811 0.99103 0.96021 1.00249 1.69889 1.33355 1.09205 1.44117 0.86199 0.80091 0.79195 0.80232 1.21157 1.21619 1.21095 1.19314 0.96367 0.94278 0.94344 1.21262 0.99341 0.93778 0.96420 1.21033 0.96782 1.00067 0.93562 1.21124 1.01475 0.93226 1.01656 1.17585 0.95038 0.91255 0.89158 1.91482 1.72712 1.81140 1.66913 1.21004 1.00348 1.01059 0.94177 0.91411 0.91583 0.91025 0.92721 0.91013 0.89742 0.91714 0.93597 0.92364 0.93511 0.84389 0.85033 0.85057 0.84869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.05 37.16 0.34 -1.38 16 2 C -0.07 -0.92 2.64 -92.93 -0.25 -1.17 16 3 H 0.10 1.15 6.82 -51.92 -0.35 0.80 16 4 C 0.54 9.24 6.89 -10.99 -0.08 9.16 16 5 O -0.55 -10.85 14.92 5.55 0.08 -10.77 16 6 N -0.60 -10.63 2.95 -156.79 -0.46 -11.09 16 7 C 0.08 1.30 5.54 -1.69 -0.01 1.29 16 8 C 0.14 2.51 5.47 -62.56 -0.34 2.16 16 9 H 0.11 1.68 8.14 -51.93 -0.42 1.26 16 10 C -0.15 -2.52 6.80 -22.30 -0.15 -2.67 16 11 C 0.10 1.85 5.25 -62.55 -0.33 1.52 16 12 H 0.11 2.09 8.04 -51.93 -0.42 1.68 16 13 C 0.17 4.02 4.82 -1.01 0.00 4.02 16 14 N -0.60 -13.87 3.09 -155.38 -0.48 -14.35 16 15 C -0.23 -6.00 10.38 -15.05 -0.16 -6.15 16 16 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 17 C 0.00 -0.13 5.49 -17.43 -0.10 -0.23 16 18 N -0.92 -26.14 10.66 55.49 0.59 -25.55 16 19 Si 0.91 21.23 29.55 -169.99 -5.02 16.21 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 C -0.04 -0.55 4.71 -104.63 -0.49 -1.05 16 24 C -0.09 -1.16 7.95 -39.57 -0.31 -1.47 16 25 C -0.10 -1.05 10.04 -39.59 -0.40 -1.45 16 26 C -0.16 -1.68 10.03 -39.52 -0.40 -2.07 16 27 C 0.09 1.07 7.30 -39.42 -0.29 0.78 16 28 F -0.14 -1.76 17.27 2.25 0.04 -1.73 16 29 C -0.15 -1.77 9.65 -39.51 -0.38 -2.15 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.85 7.28 -51.93 -0.38 0.47 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.05 0.72 7.99 -51.93 -0.41 0.30 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.05 1.22 7.77 -51.93 -0.40 0.81 16 38 H 0.06 1.50 7.44 -51.93 -0.39 1.11 16 39 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.14 1.89 6.66 -52.49 -0.35 1.54 16 41 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 42 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 43 H 0.13 1.38 7.95 -52.48 -0.42 0.96 16 LS Contribution 352.82 15.07 5.32 5.32 Total: -1.00 -30.37 352.82 -9.33 -39.70 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -6.05 Total: 3.12 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -3.34 Total: -0.86 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: -0.35 Total: -50.99 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.08 Total: -10.77 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.37 -9.33 -39.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032792014.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.024 kcal (2) G-P(sol) polarization free energy of solvation -30.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds