Wall clock time and date at job start Tue Mar 31 2020 13:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09009 * 109.47002 * 2 1 4 4 C 1.50696 * 109.47614 * 120.00133 * 2 1 3 5 5 O 1.21284 * 119.99303 * 85.99190 * 4 2 1 6 6 N 1.34772 * 120.00147 * 265.72736 * 4 2 1 7 7 C 1.47870 * 126.94395 * 354.89439 * 6 4 2 8 8 C 1.56000 * 105.11298 * 181.88221 * 7 6 4 9 9 H 1.09004 * 116.16407 * 159.05917 * 8 7 6 10 10 C 1.57086 * 99.47733 * 33.16788 * 8 7 6 11 11 C 1.49290 * 126.94326 * 175.22471 * 6 4 2 12 12 H 1.08996 * 116.15613 * 16.68913 * 11 6 4 13 13 C 1.56019 * 104.08670 * 246.68947 * 11 6 4 14 14 N 1.49058 * 105.20960 * 288.09392 * 13 11 6 15 15 C 1.36941 * 127.54678 * 181.97774 * 14 13 11 16 16 H 1.07995 * 120.00316 * 181.26926 * 15 14 13 17 17 C 1.38819 * 119.99645 * 1.26078 * 15 14 13 18 18 N 1.31611 * 119.99821 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99770 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47303 * 60.00141 * 19 17 15 21 21 H 1.48499 * 109.47161 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47271 * 300.00340 * 19 17 15 23 23 C 1.50698 * 109.46844 * 240.00616 * 2 1 3 24 24 C 1.38270 * 119.98490 * 299.72265 * 23 2 1 25 25 C 1.38233 * 120.04684 * 179.73317 * 24 23 2 26 26 C 1.38218 * 120.02722 * 0.54022 * 25 24 23 27 27 C 1.38433 * 119.97525 * 359.73487 * 26 25 24 28 28 F 1.35099 * 120.02778 * 180.02562 * 27 26 25 29 29 C 1.38176 * 119.99057 * 119.99853 * 23 2 1 30 30 H 1.08998 * 109.47550 * 56.10426 * 1 2 3 31 31 H 1.08995 * 109.47283 * 176.10435 * 1 2 3 32 32 H 1.08998 * 109.47069 * 296.10642 * 1 2 3 33 33 H 1.08994 * 110.31649 * 300.91962 * 7 6 4 34 34 H 1.09005 * 110.31111 * 63.10340 * 7 6 4 35 35 H 1.08999 * 112.36641 * 191.51448 * 10 8 7 36 36 H 1.08999 * 112.36639 * 64.07238 * 10 8 7 37 37 H 1.08999 * 110.31628 * 47.67927 * 13 11 6 38 38 H 1.09007 * 110.31379 * 169.85674 * 13 11 6 39 39 H 0.97003 * 119.99681 * 179.97438 * 18 17 15 40 40 H 1.07998 * 119.97583 * 359.97438 * 24 23 2 41 41 H 1.08001 * 119.98162 * 180.27568 * 25 24 23 42 42 H 1.08002 * 120.01005 * 179.75100 * 26 25 24 43 43 H 1.08005 * 120.01098 * 359.97438 * 29 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.1653 -1.9159 1.2226 6 7 2.3391 -0.0056 2.3375 7 6 2.3416 1.4660 2.4818 8 6 2.8164 1.7304 3.9441 9 1 3.2211 2.7222 4.1462 10 6 3.8039 0.5213 4.1181 11 6 2.7514 -0.5528 3.6639 12 1 3.0811 -1.5916 3.6736 13 6 1.5710 -0.1781 4.6128 14 7 1.6781 1.2959 4.8070 15 6 0.8883 2.0940 5.5909 16 1 1.0633 3.1591 5.6262 17 6 -0.1375 1.5338 6.3400 18 7 -0.3504 0.2358 6.2971 19 14 -1.2154 2.6225 7.4088 20 1 -1.9005 3.6286 6.5582 21 1 -2.2287 1.7875 8.1024 22 1 -0.3734 3.3168 8.4159 23 6 2.0322 -0.7103 -1.2305 24 6 1.7027 -2.0357 -1.4463 25 6 2.1581 -2.6869 -2.5774 26 6 2.9528 -2.0169 -3.4884 27 6 3.2881 -0.6915 -3.2706 28 9 4.0643 -0.0355 -4.1607 29 6 2.8266 -0.0385 -2.1399 30 1 -0.3634 0.5731 -0.8530 31 1 -0.3633 -1.0252 -0.0698 32 1 -0.3633 0.4522 0.9228 33 1 3.0344 1.9149 1.7701 34 1 1.3369 1.8624 2.3347 35 1 4.1147 0.3853 5.1539 36 1 4.6554 0.5803 3.4401 37 1 0.6181 -0.4403 4.1532 38 1 1.6813 -0.6840 5.5720 39 1 -1.0670 -0.1557 6.8209 40 1 1.0858 -2.5614 -0.7325 41 1 1.8964 -3.7209 -2.7470 42 1 3.3118 -2.5271 -4.3700 43 1 3.0872 0.9956 -1.9692 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032792014.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:18 Heat of formation + Delta-G solvation = -15.676149 kcal Electronic energy + Delta-G solvation = -26934.114944 eV Core-core repulsion = 23087.629239 eV Total energy + Delta-G solvation = -3846.485705 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.87610 -41.76193 -40.45212 -38.96637 -35.46205 -35.07787 -33.18106 -31.66233 -30.86642 -30.30614 -30.02967 -26.95567 -26.13090 -25.00877 -23.71137 -23.28836 -21.53366 -21.39365 -19.95854 -18.90919 -18.16300 -18.10955 -17.33140 -17.09803 -17.03023 -16.59818 -16.27241 -16.22140 -15.70193 -15.42016 -14.91018 -14.89891 -14.52426 -14.08443 -13.85615 -13.73830 -13.42788 -13.39852 -13.25411 -13.03670 -12.97122 -12.84067 -12.67188 -12.66066 -12.46881 -12.26798 -12.13910 -12.07654 -11.88737 -11.81596 -11.50471 -10.87254 -10.65579 -9.92395 -9.62495 -9.51763 -8.90001 -7.83692 -5.18641 0.16112 0.24554 1.48241 1.50528 1.56589 1.61681 1.97369 2.49576 2.64974 3.18890 3.32750 3.37647 3.52148 3.60527 3.79809 3.87319 3.91683 4.03065 4.11405 4.13742 4.18382 4.22504 4.28848 4.45585 4.58180 4.67218 4.69817 4.75910 4.85505 4.89732 4.95558 5.02340 5.08643 5.12630 5.14421 5.15595 5.25620 5.39492 5.45127 5.51666 5.58010 5.65218 5.93745 6.09288 6.67640 7.02146 7.15925 7.71174 8.43449 9.28048 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.023851 B = 0.003145 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.658631 B = 8900.247149 C = 9045.286512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.058 4.058 3 H 0.119 0.881 4 C 0.529 3.471 5 O -0.581 6.581 6 N -0.609 5.609 7 C 0.088 3.912 8 C 0.134 3.866 9 H 0.134 0.866 10 C -0.131 4.131 11 C 0.101 3.899 12 H 0.112 0.888 13 C 0.188 3.812 14 N -0.616 5.616 15 C -0.229 4.229 16 H 0.096 0.904 17 C -0.070 4.070 18 N -0.957 5.957 19 Si 0.976 3.024 20 H -0.276 1.276 21 H -0.304 1.304 22 H -0.275 1.275 23 C -0.055 4.055 24 C -0.106 4.106 25 C -0.095 4.095 26 C -0.151 4.151 27 C 0.077 3.923 28 F -0.146 7.146 29 C -0.146 4.146 30 H 0.094 0.906 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.102 0.898 34 H 0.058 0.942 35 H 0.078 0.922 36 H 0.100 0.900 37 H -0.001 1.001 38 H 0.019 0.981 39 H 0.243 0.757 40 H 0.121 0.879 41 H 0.155 0.845 42 H 0.156 0.844 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.669 0.909 -17.998 19.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.079 4.079 3 H 0.137 0.863 4 C 0.319 3.681 5 O -0.461 6.461 6 N -0.341 5.341 7 C -0.036 4.036 8 C 0.027 3.973 9 H 0.151 0.849 10 C -0.170 4.170 11 C -0.002 4.002 12 H 0.130 0.870 13 C 0.062 3.938 14 N -0.341 5.341 15 C -0.358 4.358 16 H 0.113 0.887 17 C -0.263 4.263 18 N -0.606 5.606 19 Si 0.805 3.195 20 H -0.202 1.202 21 H -0.231 1.231 22 H -0.201 1.201 23 C -0.056 4.056 24 C -0.124 4.124 25 C -0.113 4.113 26 C -0.169 4.169 27 C 0.058 3.942 28 F -0.125 7.125 29 C -0.165 4.165 30 H 0.113 0.887 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.120 0.880 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.118 0.882 37 H 0.017 0.983 38 H 0.037 0.963 39 H 0.053 0.947 40 H 0.139 0.861 41 H 0.173 0.827 42 H 0.174 0.826 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 7.535 0.282 -17.930 19.450 hybrid contribution -1.019 0.108 0.979 1.417 sum 6.516 0.390 -16.951 18.164 Atomic orbital electron populations 1.21679 0.90938 1.03019 1.03247 1.20198 0.98367 1.00475 0.88865 0.86345 1.20573 0.76598 0.87010 0.83960 1.90626 1.55863 1.15698 1.83948 1.49306 1.65779 1.08737 1.10297 1.23255 1.01628 0.78816 0.99942 1.23549 0.87608 0.98239 0.87864 0.84885 1.24071 0.96285 0.94915 1.01777 1.24122 0.95992 0.98624 0.81449 0.86970 1.21698 0.92996 0.84686 0.94434 1.45730 1.34624 1.03083 1.50643 1.19484 1.07977 0.91017 1.17273 0.88657 1.25628 1.01152 0.97083 1.02410 1.70131 1.33933 1.11020 1.45486 0.85186 0.78194 0.77445 0.78710 1.20203 1.23067 1.20103 1.19267 0.97415 0.94421 0.94475 1.21293 0.99892 0.94181 0.97075 1.21276 0.96200 1.01123 0.92704 1.21418 1.00489 0.92883 1.02138 1.17766 0.95306 0.91813 0.89285 1.91478 1.72794 1.81247 1.66948 1.21137 0.99669 1.01883 0.93808 0.88678 0.92495 0.93012 0.88021 0.92386 0.90313 0.88191 0.98326 0.96322 0.94747 0.86082 0.82742 0.82633 0.83092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 9.05 71.98 0.65 -2.60 16 2 C -0.06 -1.48 2.64 -12.29 -0.03 -1.51 16 3 H 0.12 2.44 6.82 -2.38 -0.02 2.43 16 4 C 0.53 17.95 6.89 87.66 0.60 18.55 16 5 O -0.58 -23.25 14.92 -3.04 -0.05 -23.30 16 6 N -0.61 -20.81 2.95 -768.37 -2.26 -23.08 16 7 C 0.09 2.59 5.54 87.16 0.48 3.07 16 8 C 0.13 4.45 5.47 46.92 0.26 4.71 16 9 H 0.13 3.70 8.14 -2.38 -0.02 3.68 16 10 C -0.13 -4.04 6.80 33.47 0.23 -3.81 16 11 C 0.10 3.82 5.25 46.93 0.25 4.07 16 12 H 0.11 4.24 8.04 -2.39 -0.02 4.22 16 13 C 0.19 9.12 4.82 86.93 0.42 9.54 16 14 N -0.62 -28.78 3.09 -645.50 -2.00 -30.78 16 15 C -0.23 -11.85 10.38 84.03 0.87 -10.98 16 16 H 0.10 4.54 7.83 -2.91 -0.02 4.52 16 17 C -0.07 -3.86 5.49 84.86 0.47 -3.39 16 18 N -0.96 -57.33 10.66 21.65 0.23 -57.10 16 19 Si 0.98 44.46 29.55 68.60 2.03 46.49 16 20 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 21 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 22 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 23 C -0.06 -1.34 4.71 -19.87 -0.09 -1.43 16 24 C -0.11 -2.65 7.95 22.28 0.18 -2.47 16 25 C -0.10 -1.89 10.04 22.26 0.22 -1.67 16 26 C -0.15 -2.83 10.03 22.31 0.22 -2.61 16 27 C 0.08 1.65 7.30 22.38 0.16 1.82 16 28 F -0.15 -3.20 17.27 44.97 0.78 -2.42 16 29 C -0.15 -3.13 9.65 22.31 0.22 -2.91 16 30 H 0.09 1.81 8.14 -2.39 -0.02 1.80 16 31 H 0.06 1.49 7.28 -2.39 -0.02 1.47 16 32 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.10 2.14 7.99 -2.39 -0.02 2.12 16 34 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 35 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.00 -0.08 7.77 -2.39 -0.02 -0.10 16 38 H 0.02 1.03 7.44 -2.38 -0.02 1.01 16 39 H 0.24 14.46 8.31 -92.71 -0.77 13.69 16 40 H 0.12 3.40 6.66 -2.91 -0.02 3.38 16 41 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 42 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 43 H 0.15 2.58 7.95 -2.91 -0.02 2.56 16 Total: -1.00 -69.52 352.82 4.85 -64.67 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 1.01 Total: 17.14 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: 5.10 Total: 8.37 kcal Atomic # 7 Polarization: -106.93 SS G_CDS: -4.03 Total: -110.96 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.05 Total: -23.30 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.78 Total: -2.42 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -69.52 4.85 -64.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032792014.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.998 kcal (2) G-P(sol) polarization free energy of solvation -69.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds