Wall clock time and date at job start Tue Mar 31 2020 13:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.87591 * 2 1 4 4 C 1.54327 * 109.88398 * 121.01863 * 2 1 3 5 5 H 1.09000 * 110.71712 * 215.92068 * 4 2 1 6 6 N 1.46499 * 110.71503 * 339.01247 * 4 2 1 7 7 C 1.36935 * 119.99926 * 202.56202 * 6 4 2 8 8 H 1.08005 * 119.99877 * 359.97438 * 7 6 4 9 9 C 1.38811 * 120.00369 * 179.73019 * 7 6 4 10 10 N 1.31617 * 119.99773 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00451 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47050 * 59.99408 * 11 9 7 13 13 H 1.48496 * 109.47289 * 179.97438 * 11 9 7 14 14 H 1.48508 * 109.46855 * 299.99389 * 11 9 7 15 15 C 1.55155 * 103.10432 * 97.46521 * 4 2 1 16 16 C 1.55123 * 101.48386 * 35.28429 * 15 4 2 17 17 N 1.47022 * 110.00975 * 238.89969 * 2 1 3 18 18 C 1.34778 * 125.65146 * 59.48918 * 17 2 1 19 19 O 1.21284 * 119.99779 * 359.97438 * 18 17 2 20 20 C 1.50694 * 120.00365 * 179.97438 * 18 17 2 21 21 H 1.09004 * 112.50873 * 309.66228 * 20 18 17 22 22 C 1.52890 * 113.16700 * 179.84194 * 20 18 17 23 23 C 1.51605 * 84.67764 * 244.77083 * 22 20 18 24 24 C 1.38966 * 145.50340 * 180.02562 * 23 22 20 25 25 C 1.37940 * 120.35625 * 179.97438 * 24 23 22 26 26 C 1.38461 * 120.15299 * 359.97267 * 25 24 23 27 27 F 1.35094 * 120.15203 * 180.02562 * 26 25 24 28 28 C 1.38399 * 119.69272 * 359.97438 * 26 25 24 29 29 C 1.38198 * 120.10491 * 0.05522 * 28 26 25 30 30 H 1.09001 * 109.47254 * 298.98433 * 1 2 3 31 31 H 1.08999 * 109.47268 * 58.98389 * 1 2 3 32 32 H 1.09008 * 109.47166 * 178.98487 * 1 2 3 33 33 H 0.97005 * 120.00261 * 22.56326 * 6 4 2 34 34 H 0.97004 * 120.00382 * 180.02562 * 10 9 7 35 35 H 1.08999 * 111.00075 * 153.49043 * 15 4 2 36 36 H 1.08999 * 111.00356 * 277.34164 * 15 4 2 37 37 H 1.09000 * 110.41541 * 204.29248 * 16 15 4 38 38 H 1.08993 * 110.20716 * 82.04592 * 16 15 4 39 39 H 1.08996 * 113.98521 * 358.71408 * 22 20 18 40 40 H 1.08991 * 113.98955 * 130.82719 * 22 20 18 41 41 H 1.07998 * 119.82064 * 359.95175 * 24 23 22 42 42 H 1.07995 * 119.92159 * 179.97438 * 25 24 23 43 43 H 1.08008 * 119.94494 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0549 -0.7479 1.2437 5 1 2.9624 -0.2774 1.6220 6 7 1.0280 -0.8026 2.2872 7 6 1.3899 -0.9875 3.5948 8 1 2.4323 -1.0933 3.8569 9 6 0.4174 -1.0337 4.5843 10 7 -0.8525 -0.8994 4.2656 11 14 0.9110 -1.2852 6.3682 12 1 1.8049 -0.1788 6.7951 13 1 -0.3043 -1.2963 7.2213 14 1 1.6252 -2.5799 6.5064 15 6 2.3591 -2.1680 0.6979 16 6 2.8618 -1.8473 -0.7342 17 7 2.0330 -0.7136 -1.1829 18 6 1.7794 -0.3852 -2.4652 19 8 1.0808 0.5732 -2.7189 20 6 2.3638 -1.2088 -3.5837 21 1 3.4365 -1.3652 -3.4703 22 6 1.9737 -0.7008 -4.9720 23 6 1.2478 -2.0258 -5.0980 24 6 0.4629 -2.8283 -5.9172 25 6 0.0416 -4.0676 -5.4820 26 6 0.3991 -4.5214 -4.2237 27 9 -0.0130 -5.7354 -3.7977 28 6 1.1816 -3.7261 -3.4048 29 6 1.6026 -2.4844 -3.8416 30 1 -0.3634 0.4980 0.8990 31 1 -0.3634 0.5295 -0.8807 32 1 -0.3634 -1.0276 -0.0182 33 1 0.0917 -0.7079 2.0518 34 1 -1.5322 -0.9314 4.9570 35 1 3.1357 -2.6551 1.2877 36 1 1.4553 -2.7763 0.6663 37 1 2.7164 -2.7062 -1.3894 38 1 3.9134 -1.5620 -0.7090 39 1 1.3139 0.1667 -4.9571 40 1 2.8151 -0.5894 -5.6557 41 1 0.1809 -2.4797 -6.8997 42 1 -0.5685 -4.6854 -6.1242 43 1 1.4633 -4.0762 -2.4226 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074833439.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:21 Heat of formation + Delta-G solvation = -8.841672 kcal Electronic energy + Delta-G solvation = -26742.916923 eV Core-core repulsion = 22896.727583 eV Total energy + Delta-G solvation = -3846.189340 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.95868 -42.22953 -40.63153 -38.80914 -36.02757 -35.94845 -33.47841 -32.17645 -31.87071 -30.75405 -28.47402 -26.81212 -26.47422 -25.19662 -24.04492 -23.26492 -21.91454 -20.77995 -19.86320 -19.46006 -18.63212 -18.21955 -17.59612 -17.03558 -16.76273 -16.56529 -16.33014 -16.16538 -16.03153 -15.50012 -15.05304 -14.87448 -14.65668 -14.42185 -14.07793 -13.93695 -13.72726 -13.42004 -13.23933 -13.08889 -12.92173 -12.85057 -12.80678 -12.72986 -12.54027 -12.38612 -12.12616 -12.06799 -11.64386 -11.61267 -11.56099 -10.94872 -10.91122 -10.00327 -9.69830 -9.50109 -9.02132 -7.93892 -5.23233 0.02651 0.14340 1.47833 1.49124 1.51755 1.57668 1.89450 2.49782 2.57691 2.79472 3.22416 3.35198 3.40058 3.48986 3.52802 3.73559 3.86904 3.91917 3.96545 4.16979 4.21685 4.29928 4.34651 4.38722 4.47347 4.52869 4.60218 4.62892 4.76463 4.83176 4.83833 4.94879 5.02035 5.05598 5.08900 5.17613 5.18498 5.23045 5.30713 5.47737 5.54195 5.55534 5.83116 6.27325 6.53004 7.07467 7.34646 8.08353 8.31605 9.29634 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.017515 B = 0.003321 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.256138 B = 8429.943305 C = 9260.334186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.134 3.866 3 H 0.070 0.930 4 C 0.166 3.834 5 H 0.072 0.928 6 N -0.733 5.733 7 C -0.241 4.241 8 H 0.083 0.917 9 C -0.075 4.075 10 N -0.972 5.972 11 Si 0.973 3.027 12 H -0.277 1.277 13 H -0.301 1.301 14 H -0.276 1.276 15 C -0.146 4.146 16 C 0.104 3.896 17 N -0.604 5.604 18 C 0.536 3.464 19 O -0.572 6.572 20 C -0.053 4.053 21 H 0.153 0.847 22 C -0.047 4.047 23 C -0.131 4.131 24 C -0.072 4.072 25 C -0.143 4.143 26 C 0.077 3.923 27 F -0.146 7.146 28 C -0.129 4.129 29 C -0.113 4.113 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.041 0.959 33 H 0.379 0.621 34 H 0.250 0.750 35 H 0.090 0.910 36 H 0.050 0.950 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.139 0.861 41 H 0.160 0.840 42 H 0.161 0.839 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.957 -4.819 -23.002 25.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.030 3.970 3 H 0.088 0.912 4 C 0.056 3.944 5 H 0.090 0.910 6 N -0.375 5.375 7 C -0.372 4.372 8 H 0.100 0.900 9 C -0.267 4.267 10 N -0.622 5.622 11 Si 0.803 3.197 12 H -0.203 1.203 13 H -0.227 1.227 14 H -0.202 1.202 15 C -0.187 4.187 16 C -0.019 4.019 17 N -0.337 5.337 18 C 0.325 3.675 19 O -0.452 6.452 20 C -0.073 4.073 21 H 0.170 0.830 22 C -0.084 4.084 23 C -0.131 4.131 24 C -0.090 4.090 25 C -0.161 4.161 26 C 0.058 3.942 27 F -0.125 7.125 28 C -0.148 4.148 29 C -0.114 4.114 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.215 0.785 34 H 0.059 0.941 35 H 0.108 0.892 36 H 0.069 0.931 37 H 0.107 0.893 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.157 0.843 41 H 0.177 0.823 42 H 0.178 0.822 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 9.650 -4.368 -23.019 25.339 hybrid contribution -0.883 -0.515 1.648 1.939 sum 8.767 -4.883 -21.370 23.609 Atomic orbital electron populations 1.21806 0.96091 1.00991 1.01261 1.21599 0.94014 0.95977 0.85424 0.91205 1.21398 0.92127 0.94094 0.86777 0.91025 1.42853 1.05294 1.86612 1.02757 1.19639 0.93109 1.39885 0.84594 0.89959 1.25559 0.95305 1.03720 1.02136 1.69821 1.00100 1.58996 1.33312 0.85213 0.76284 0.78288 0.79962 1.20343 1.22720 1.20213 1.23404 1.01274 0.98811 0.95189 1.22578 0.95554 0.88502 0.95217 1.48593 1.49971 1.30701 1.04418 1.20363 0.80173 0.84409 0.82507 1.90665 1.40113 1.30899 1.83542 1.21433 1.02400 0.89454 0.94043 0.82974 1.21841 1.00229 0.93448 0.92859 1.22739 0.97754 0.97637 0.94952 1.20691 0.95537 0.91884 1.00854 1.21289 1.02358 0.97824 0.94677 1.17594 0.99750 0.81865 0.94993 1.91489 1.88793 1.41778 1.90419 1.20223 0.99912 0.93826 1.00829 1.21069 0.99623 0.93300 0.97383 0.92421 0.92562 0.93957 0.78467 0.94122 0.89159 0.93068 0.89255 0.88109 0.88178 0.84319 0.82267 0.82153 0.84898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.68 7.94 71.98 0.57 -5.10 16 2 C 0.13 4.70 3.47 45.34 0.16 4.86 16 3 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 4 C 0.17 6.18 3.46 46.18 0.16 6.34 16 5 H 0.07 2.58 8.11 -2.39 -0.02 2.56 16 6 N -0.73 -35.79 4.98 -317.33 -1.58 -37.37 16 7 C -0.24 -12.86 9.97 84.03 0.84 -12.02 16 8 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 9 C -0.08 -4.23 5.50 84.86 0.47 -3.76 16 10 N -0.97 -59.28 13.06 21.65 0.28 -59.00 16 11 Si 0.97 45.35 29.55 68.60 2.03 47.38 16 12 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 13 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 14 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 15 C -0.15 -4.47 6.79 32.06 0.22 -4.25 16 16 C 0.10 2.33 6.67 86.93 0.58 2.91 16 17 N -0.60 -17.16 3.09 -787.65 -2.43 -19.59 16 18 C 0.54 14.99 7.13 87.66 0.63 15.62 16 19 O -0.57 -20.19 14.58 -3.04 -0.04 -20.23 16 20 C -0.05 -0.98 3.20 -14.65 -0.05 -1.03 16 21 H 0.15 1.82 8.12 -2.38 -0.02 1.80 16 22 C -0.05 -0.73 7.92 30.10 0.24 -0.50 16 23 C -0.13 -2.38 7.32 -21.71 -0.16 -2.54 16 24 C -0.07 -1.13 10.04 22.37 0.22 -0.90 16 25 C -0.14 -2.48 10.01 22.25 0.22 -2.26 16 26 C 0.08 1.71 7.31 22.36 0.16 1.88 16 27 F -0.15 -3.58 17.27 44.97 0.78 -2.81 16 28 C -0.13 -2.91 9.73 22.30 0.22 -2.69 16 29 C -0.11 -2.35 6.46 -19.82 -0.13 -2.48 16 30 H 0.06 2.53 6.72 -2.39 -0.02 2.51 16 31 H 0.06 2.23 6.77 -2.39 -0.02 2.21 16 32 H 0.04 1.74 8.05 -2.38 -0.02 1.72 16 33 H 0.38 20.18 4.99 -92.70 -0.46 19.72 16 34 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 35 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.09 1.70 5.94 -2.39 -0.01 1.68 16 38 H 0.10 1.69 8.14 -2.39 -0.02 1.68 16 39 H 0.10 1.95 7.02 -2.39 -0.02 1.94 16 40 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.16 1.52 8.06 -2.91 -0.02 1.49 16 42 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 43 H 0.13 2.90 7.18 -2.91 -0.02 2.88 16 Total: -1.00 -70.20 352.65 3.96 -66.24 By element: Atomic # 1 Polarization: 30.74 SS G_CDS: 0.58 Total: 31.32 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: 4.35 Total: -5.94 kcal Atomic # 7 Polarization: -112.23 SS G_CDS: -3.73 Total: -115.96 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.04 Total: -20.23 kcal Atomic # 9 Polarization: -3.58 SS G_CDS: 0.78 Total: -2.81 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -70.20 3.96 -66.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074833439.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.393 kcal (2) G-P(sol) polarization free energy of solvation -70.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds