Wall clock time and date at job start Tue Mar 31 2020 13:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 110.64076 * 2 1 4 4 C 1.54337 * 111.00357 * 236.92026 * 2 1 3 5 5 N 1.47017 * 107.26933 * 219.59908 * 4 2 1 6 6 C 1.36938 * 125.65247 * 178.85228 * 5 4 2 7 7 H 1.08001 * 119.99274 * 347.81611 * 6 5 4 8 8 C 1.38807 * 120.00241 * 167.82180 * 6 5 4 9 9 N 1.31613 * 120.00102 * 325.95749 * 8 6 5 10 10 Si 1.86799 * 120.00027 * 145.95684 * 8 6 5 11 11 H 1.48505 * 109.47214 * 59.99926 * 10 8 6 12 12 H 1.48497 * 109.47205 * 299.99872 * 10 8 6 13 13 H 1.48502 * 109.47469 * 179.97438 * 10 8 6 14 14 C 1.47429 * 108.70115 * 358.58786 * 5 4 2 15 15 C 1.54910 * 104.83236 * 24.35419 * 14 5 4 16 16 H 1.08997 * 111.00262 * 81.06945 * 15 14 5 17 17 N 1.46501 * 111.00222 * 204.88255 * 15 14 5 18 18 C 1.34781 * 119.99628 * 273.54393 * 17 15 14 19 19 O 1.21284 * 120.00132 * 0.02562 * 18 17 15 20 20 C 1.50700 * 119.99837 * 180.02562 * 18 17 15 21 21 H 1.09002 * 112.50716 * 50.32400 * 20 18 17 22 22 C 1.52885 * 113.16334 * 180.22727 * 20 18 17 23 23 C 1.51439 * 84.73469 * 115.22621 * 22 20 18 24 24 C 1.38971 * 145.49431 * 180.02562 * 23 22 20 25 25 C 1.37937 * 120.35482 * 179.97438 * 24 23 22 26 26 C 1.38463 * 120.15187 * 359.97438 * 25 24 23 27 27 F 1.35100 * 120.15384 * 180.02562 * 26 25 24 28 28 C 1.38401 * 119.69597 * 0.02562 * 26 25 24 29 29 C 1.38206 * 120.10243 * 359.96342 * 28 26 25 30 30 H 1.08997 * 109.47506 * 296.85545 * 1 2 3 31 31 H 1.08996 * 109.47217 * 56.86446 * 1 2 3 32 32 H 1.09003 * 109.46931 * 176.85811 * 1 2 3 33 33 H 1.09000 * 109.98990 * 100.12347 * 4 2 1 34 34 H 1.09003 * 109.78048 * 338.95973 * 4 2 1 35 35 H 0.97004 * 120.00325 * 354.24795 * 9 8 6 36 36 H 1.09001 * 110.36947 * 143.19479 * 14 5 4 37 37 H 1.09005 * 110.36223 * 265.40598 * 14 5 4 38 38 H 0.96996 * 120.00168 * 93.55106 * 17 15 14 39 39 H 1.08999 * 113.98961 * 229.16569 * 22 20 18 40 40 H 1.08992 * 113.99109 * 1.27729 * 22 20 18 41 41 H 1.07992 * 119.82245 * 359.96853 * 24 23 22 42 42 H 1.08002 * 119.92567 * 179.97438 * 25 24 23 43 43 H 1.08001 * 119.94817 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0831 -0.7864 -1.2073 5 7 3.2494 -1.5470 -0.7354 6 6 4.0126 -2.3918 -1.4964 7 1 3.6683 -2.6979 -2.4733 8 6 5.2283 -2.8547 -1.0123 9 7 5.9697 -2.0814 -0.2477 10 14 5.8123 -4.5752 -1.4460 11 1 5.9435 -4.6965 -2.9203 12 1 4.8273 -5.5712 -0.9532 13 1 7.1306 -4.8256 -0.8100 14 6 3.4652 -1.2446 0.6913 15 6 2.0790 -0.7934 1.2151 16 1 1.4470 -1.6529 1.4384 17 7 2.2175 0.0721 2.3890 18 6 2.3110 -0.4707 3.6191 19 8 2.2809 -1.6757 3.7542 20 6 2.4529 0.4195 4.8268 21 1 1.7043 1.2114 4.8517 22 6 2.5513 -0.3585 6.1392 23 6 3.9480 0.2216 6.2165 24 6 5.1221 0.2855 6.9572 25 6 6.1862 1.0424 6.5129 26 6 6.0916 1.7446 5.3233 27 9 7.1341 2.4855 4.8879 28 6 4.9243 1.6839 4.5823 29 6 3.8588 0.9251 5.0283 30 1 -0.3634 0.4642 0.9168 31 1 -0.3633 0.5617 -0.8605 32 1 -0.3633 -1.0262 -0.0563 33 1 2.3848 -0.0961 -1.9951 34 1 1.3216 -1.4702 -1.5824 35 1 5.7082 -1.1606 -0.0905 36 1 3.7993 -2.1363 1.2218 37 1 4.1944 -0.4421 0.8029 38 1 2.2418 1.0357 2.2810 39 1 1.8788 0.0002 6.9184 40 1 2.5273 -1.4411 6.0155 41 1 5.2018 -0.2602 7.8857 42 1 7.0953 1.0875 7.0943 43 1 4.8462 2.2297 3.6536 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080335484.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:51 Heat of formation + Delta-G solvation = 4.689884 kcal Electronic energy + Delta-G solvation = -26691.223313 eV Core-core repulsion = 22845.620746 eV Total energy + Delta-G solvation = -3845.602567 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.95849 -41.16717 -39.19687 -37.66410 -35.11654 -34.14935 -32.83100 -31.01574 -30.39546 -28.47870 -27.33647 -25.56893 -25.30198 -23.57610 -22.55781 -21.29391 -20.36120 -20.22860 -19.42037 -17.68183 -17.47607 -17.16502 -16.71371 -15.99866 -15.63507 -15.32777 -15.00739 -14.62614 -14.40510 -14.02206 -13.80324 -13.66359 -13.45324 -13.18583 -13.01188 -12.85406 -12.60847 -12.41245 -12.01825 -11.90796 -11.81243 -11.56129 -11.49232 -10.89857 -10.76854 -10.70165 -10.63198 -10.41887 -10.09412 -9.94939 -9.86314 -9.63748 -9.08510 -8.71794 -8.58169 -8.30168 -6.94902 -6.12514 -3.05889 0.93250 1.04011 2.64776 3.21364 3.43186 3.53826 3.60902 3.72307 3.77372 4.09156 4.23985 4.37973 4.62628 4.75872 4.80189 4.95066 4.98582 5.11710 5.18299 5.26106 5.31483 5.33184 5.46489 5.55750 5.64296 5.75398 5.78197 5.84987 5.89077 5.95101 5.97368 6.03765 6.04066 6.20707 6.28631 6.42254 6.56409 6.59391 6.70994 6.79214 6.98734 7.09113 7.66292 7.81324 8.35545 8.51078 9.02241 9.84604 10.38761 11.21900 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.010869 B = 0.004286 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.426992 B = 6531.946879 C = 7805.567209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 H 0.075 0.925 4 C 0.142 3.858 5 N -0.600 5.600 6 C -0.348 4.348 7 H 0.068 0.932 8 C -0.019 4.019 9 N -0.904 5.904 10 Si 1.055 2.945 11 H -0.293 1.293 12 H -0.293 1.293 13 H -0.286 1.286 14 C 0.142 3.858 15 C 0.130 3.870 16 H 0.095 0.905 17 N -0.711 5.711 18 C 0.526 3.474 19 O -0.527 6.527 20 C -0.062 4.062 21 H 0.120 0.880 22 C -0.056 4.056 23 C -0.126 4.126 24 C -0.072 4.072 25 C -0.145 4.145 26 C 0.101 3.899 27 F -0.136 7.136 28 C -0.113 4.113 29 C -0.099 4.099 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.024 0.976 34 H 0.030 0.970 35 H 0.267 0.733 36 H 0.056 0.944 37 H 0.024 0.976 38 H 0.397 0.603 39 H 0.102 0.898 40 H 0.116 0.884 41 H 0.130 0.870 42 H 0.139 0.861 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.423 10.544 14.249 19.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 H 0.093 0.907 4 C 0.016 3.984 5 N -0.328 5.328 6 C -0.475 4.475 7 H 0.086 0.914 8 C -0.222 4.222 9 N -0.543 5.543 10 Si 0.885 3.115 11 H -0.220 1.220 12 H -0.220 1.220 13 H -0.211 1.211 14 C 0.015 3.985 15 C 0.025 3.975 16 H 0.113 0.887 17 N -0.361 5.361 18 C 0.310 3.690 19 O -0.402 6.402 20 C -0.083 4.083 21 H 0.138 0.862 22 C -0.093 4.093 23 C -0.126 4.126 24 C -0.090 4.090 25 C -0.164 4.164 26 C 0.082 3.918 27 F -0.114 7.114 28 C -0.132 4.132 29 C -0.099 4.099 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.042 0.958 34 H 0.048 0.952 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.041 0.959 38 H 0.230 0.770 39 H 0.120 0.880 40 H 0.134 0.866 41 H 0.148 0.852 42 H 0.157 0.843 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.131 8.497 14.500 18.257 hybrid contribution -0.759 1.947 -0.663 2.192 sum -7.889 10.444 13.838 19.048 Atomic orbital electron populations 1.21731 0.94557 1.02063 1.01095 1.22423 0.95558 0.99202 0.95767 0.90683 1.21351 0.90523 0.92996 0.93533 1.44458 1.31848 1.51501 1.04979 1.19652 1.02072 1.23327 1.02455 0.91405 1.25662 0.91905 1.05052 0.99576 1.70799 1.35116 1.07694 1.40691 0.83676 0.75969 0.76420 0.75469 1.21973 1.22041 1.21126 1.21755 0.92043 0.98897 0.85775 1.22410 0.99397 0.92843 0.82869 0.88721 1.45875 1.74073 1.10115 1.06052 1.19987 0.76329 0.88702 0.83937 1.90731 1.49110 1.14647 1.85752 1.21359 0.93914 0.98026 0.94985 0.86190 1.21742 0.90880 1.02353 0.94337 1.22378 0.96112 0.98278 0.95862 1.20337 0.90985 0.97876 0.99811 1.20973 1.00308 0.99022 0.96105 1.17306 0.84759 0.95015 0.94735 1.91519 1.55796 1.74552 1.89538 1.20060 0.91100 1.01227 1.00805 1.20958 0.95039 0.97041 0.96903 0.92960 0.92623 0.92351 0.95768 0.95197 0.92195 0.92610 0.95871 0.76959 0.88021 0.86593 0.85190 0.84339 0.84768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.17 37.16 0.34 -1.40 16 2 C -0.11 -1.77 3.15 -88.78 -0.28 -2.05 16 3 H 0.07 1.11 8.00 -51.93 -0.42 0.69 16 4 C 0.14 2.94 6.85 -3.06 -0.02 2.92 16 5 N -0.60 -15.63 3.33 -170.06 -0.57 -16.19 16 6 C -0.35 -10.14 9.97 -15.06 -0.15 -10.29 16 7 H 0.07 1.96 8.02 -52.49 -0.42 1.54 16 8 C -0.02 -0.57 4.95 -17.43 -0.09 -0.66 16 9 N -0.90 -28.27 12.87 55.49 0.71 -27.56 16 10 Si 1.06 26.34 30.03 -169.99 -5.10 21.24 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 13 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 14 C 0.14 3.45 5.03 -2.53 -0.01 3.44 16 15 C 0.13 2.39 2.76 -65.78 -0.18 2.20 16 16 H 0.09 1.90 7.64 -51.93 -0.40 1.50 16 17 N -0.71 -10.48 5.23 -51.73 -0.27 -10.75 16 18 C 0.53 8.11 7.33 -10.98 -0.08 8.03 16 19 O -0.53 -10.40 15.41 5.55 0.09 -10.32 16 20 C -0.06 -0.69 4.15 -96.57 -0.40 -1.09 16 21 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 22 C -0.06 -0.58 7.91 -27.58 -0.22 -0.80 16 23 C -0.13 -1.49 7.32 -107.55 -0.79 -2.27 16 24 C -0.07 -0.78 10.04 -39.42 -0.40 -1.17 16 25 C -0.15 -1.64 10.01 -39.61 -0.40 -2.04 16 26 C 0.10 1.33 7.31 -39.44 -0.29 1.04 16 27 F -0.14 -1.88 17.27 2.25 0.04 -1.84 16 28 C -0.11 -1.47 10.02 -39.53 -0.40 -1.87 16 29 C -0.10 -1.24 7.05 -104.56 -0.74 -1.97 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.03 0.61 7.78 -51.93 -0.40 0.21 16 35 H 0.27 8.40 6.45 -40.82 -0.26 8.14 16 36 H 0.06 1.59 7.82 -51.93 -0.41 1.18 16 37 H 0.02 0.60 7.02 -51.93 -0.36 0.24 16 38 H 0.40 4.57 8.52 -40.82 -0.35 4.22 16 39 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.12 1.41 7.02 -51.93 -0.36 1.04 16 41 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 43 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 359.70 15.07 5.42 5.42 Total: -1.00 -35.30 359.70 -9.75 -45.06 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -5.98 Total: 2.93 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -4.09 Total: -7.98 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: -0.12 Total: -54.50 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 26.34 SS G_CDS: -5.10 Total: 21.24 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.30 -9.75 -45.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080335484.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.745 kcal (2) G-P(sol) polarization free energy of solvation -35.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds