Wall clock time and date at job start Tue Mar 31 2020 13:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 110.64076 * 2 1 4 4 C 1.54337 * 111.00357 * 236.92026 * 2 1 3 5 5 N 1.47017 * 107.26933 * 219.59908 * 4 2 1 6 6 C 1.36938 * 125.65247 * 178.85228 * 5 4 2 7 7 H 1.08001 * 119.99274 * 347.81611 * 6 5 4 8 8 C 1.38807 * 120.00241 * 167.82180 * 6 5 4 9 9 N 1.31613 * 120.00102 * 325.95749 * 8 6 5 10 10 Si 1.86799 * 120.00027 * 145.95684 * 8 6 5 11 11 H 1.48505 * 109.47214 * 59.99926 * 10 8 6 12 12 H 1.48497 * 109.47205 * 299.99872 * 10 8 6 13 13 H 1.48502 * 109.47469 * 179.97438 * 10 8 6 14 14 C 1.47429 * 108.70115 * 358.58786 * 5 4 2 15 15 C 1.54910 * 104.83236 * 24.35419 * 14 5 4 16 16 H 1.08997 * 111.00262 * 81.06945 * 15 14 5 17 17 N 1.46501 * 111.00222 * 204.88255 * 15 14 5 18 18 C 1.34781 * 119.99628 * 273.54393 * 17 15 14 19 19 O 1.21284 * 120.00132 * 0.02562 * 18 17 15 20 20 C 1.50700 * 119.99837 * 180.02562 * 18 17 15 21 21 H 1.09002 * 112.50716 * 50.32400 * 20 18 17 22 22 C 1.52885 * 113.16334 * 180.22727 * 20 18 17 23 23 C 1.51439 * 84.73469 * 115.22621 * 22 20 18 24 24 C 1.38971 * 145.49431 * 180.02562 * 23 22 20 25 25 C 1.37937 * 120.35482 * 179.97438 * 24 23 22 26 26 C 1.38463 * 120.15187 * 359.97438 * 25 24 23 27 27 F 1.35100 * 120.15384 * 180.02562 * 26 25 24 28 28 C 1.38401 * 119.69597 * 0.02562 * 26 25 24 29 29 C 1.38206 * 120.10243 * 359.96342 * 28 26 25 30 30 H 1.08997 * 109.47506 * 296.85545 * 1 2 3 31 31 H 1.08996 * 109.47217 * 56.86446 * 1 2 3 32 32 H 1.09003 * 109.46931 * 176.85811 * 1 2 3 33 33 H 1.09000 * 109.98990 * 100.12347 * 4 2 1 34 34 H 1.09003 * 109.78048 * 338.95973 * 4 2 1 35 35 H 0.97004 * 120.00325 * 354.24795 * 9 8 6 36 36 H 1.09001 * 110.36947 * 143.19479 * 14 5 4 37 37 H 1.09005 * 110.36223 * 265.40598 * 14 5 4 38 38 H 0.96996 * 120.00168 * 93.55106 * 17 15 14 39 39 H 1.08999 * 113.98961 * 229.16569 * 22 20 18 40 40 H 1.08992 * 113.99109 * 1.27729 * 22 20 18 41 41 H 1.07992 * 119.82245 * 359.96853 * 24 23 22 42 42 H 1.08002 * 119.92567 * 179.97438 * 25 24 23 43 43 H 1.08001 * 119.94817 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0831 -0.7864 -1.2073 5 7 3.2494 -1.5470 -0.7354 6 6 4.0126 -2.3918 -1.4964 7 1 3.6683 -2.6979 -2.4733 8 6 5.2283 -2.8547 -1.0123 9 7 5.9697 -2.0814 -0.2477 10 14 5.8123 -4.5752 -1.4460 11 1 5.9435 -4.6965 -2.9203 12 1 4.8273 -5.5712 -0.9532 13 1 7.1306 -4.8256 -0.8100 14 6 3.4652 -1.2446 0.6913 15 6 2.0790 -0.7934 1.2151 16 1 1.4470 -1.6529 1.4384 17 7 2.2175 0.0721 2.3890 18 6 2.3110 -0.4707 3.6191 19 8 2.2809 -1.6757 3.7542 20 6 2.4529 0.4195 4.8268 21 1 1.7043 1.2114 4.8517 22 6 2.5513 -0.3585 6.1392 23 6 3.9480 0.2216 6.2165 24 6 5.1221 0.2855 6.9572 25 6 6.1862 1.0424 6.5129 26 6 6.0916 1.7446 5.3233 27 9 7.1341 2.4855 4.8879 28 6 4.9243 1.6839 4.5823 29 6 3.8588 0.9251 5.0283 30 1 -0.3634 0.4642 0.9168 31 1 -0.3633 0.5617 -0.8605 32 1 -0.3633 -1.0262 -0.0563 33 1 2.3848 -0.0961 -1.9951 34 1 1.3216 -1.4702 -1.5824 35 1 5.7082 -1.1606 -0.0905 36 1 3.7993 -2.1363 1.2218 37 1 4.1944 -0.4421 0.8029 38 1 2.2418 1.0357 2.2810 39 1 1.8788 0.0002 6.9184 40 1 2.5273 -1.4411 6.0155 41 1 5.2018 -0.2602 7.8857 42 1 7.0953 1.0875 7.0943 43 1 4.8462 2.2297 3.6536 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080335484.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:50 Heat of formation + Delta-G solvation = -17.928784 kcal Electronic energy + Delta-G solvation = -26692.204132 eV Core-core repulsion = 22845.620746 eV Total energy + Delta-G solvation = -3846.583386 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.98756 -42.17939 -40.53819 -39.17516 -36.11509 -35.85373 -34.46246 -32.21023 -31.92273 -30.03175 -28.44545 -27.28387 -26.44485 -25.13255 -23.64874 -22.54882 -21.87632 -21.67225 -20.65881 -19.63204 -18.71974 -18.19884 -17.78213 -17.33942 -16.68330 -16.51677 -16.24491 -16.20479 -15.71745 -15.62327 -15.44131 -14.91086 -14.67856 -14.56320 -14.48594 -14.16306 -13.91990 -13.54680 -13.43254 -13.05827 -12.86897 -12.77116 -12.74057 -12.52740 -12.42177 -12.20138 -12.11629 -11.94745 -11.71797 -11.67573 -11.61915 -11.08302 -10.51474 -10.18218 -10.03027 -9.52737 -9.10743 -8.46410 -5.35052 -0.00069 0.11890 1.43880 1.50096 1.59822 1.78127 2.00598 2.47684 2.58909 2.77365 3.08481 3.22208 3.35834 3.44707 3.49029 3.50455 3.82345 3.84306 3.91920 3.93925 4.20097 4.27317 4.29365 4.43320 4.45089 4.50925 4.58848 4.77170 4.80387 4.89826 4.91976 4.94880 5.00040 5.01959 5.03208 5.07206 5.15453 5.16721 5.34759 5.48098 5.51873 5.61662 5.80729 6.21630 6.46154 6.79905 7.16048 7.63831 8.21757 8.88054 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.010869 B = 0.004286 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.426992 B = 6531.946879 C = 7805.567209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.091 4.091 3 H 0.097 0.903 4 C 0.132 3.868 5 N -0.625 5.625 6 C -0.357 4.357 7 H 0.067 0.933 8 C -0.075 4.075 9 N -0.934 5.934 10 Si 1.106 2.894 11 H -0.266 1.266 12 H -0.285 1.285 13 H -0.292 1.292 14 C 0.153 3.847 15 C 0.149 3.851 16 H 0.079 0.921 17 N -0.699 5.699 18 C 0.521 3.479 19 O -0.575 6.575 20 C -0.049 4.049 21 H 0.166 0.834 22 C -0.048 4.048 23 C -0.134 4.134 24 C -0.074 4.074 25 C -0.145 4.145 26 C 0.074 3.926 27 F -0.146 7.146 28 C -0.129 4.129 29 C -0.118 4.118 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.049 0.951 33 H 0.025 0.975 34 H 0.036 0.964 35 H 0.252 0.748 36 H -0.001 1.001 37 H 0.002 0.998 38 H 0.416 0.584 39 H 0.144 0.856 40 H 0.095 0.905 41 H 0.160 0.840 42 H 0.161 0.839 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.623 11.525 15.295 21.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.110 4.110 3 H 0.115 0.885 4 C 0.008 3.992 5 N -0.352 5.352 6 C -0.485 4.485 7 H 0.084 0.916 8 C -0.272 4.272 9 N -0.576 5.576 10 Si 0.930 3.070 11 H -0.191 1.191 12 H -0.212 1.212 13 H -0.218 1.218 14 C 0.026 3.974 15 C 0.042 3.958 16 H 0.097 0.903 17 N -0.350 5.350 18 C 0.308 3.692 19 O -0.454 6.454 20 C -0.070 4.070 21 H 0.184 0.816 22 C -0.085 4.085 23 C -0.134 4.134 24 C -0.092 4.092 25 C -0.163 4.163 26 C 0.055 3.945 27 F -0.125 7.125 28 C -0.148 4.148 29 C -0.118 4.118 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.068 0.932 33 H 0.043 0.957 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.018 0.982 37 H 0.019 0.981 38 H 0.253 0.747 39 H 0.162 0.838 40 H 0.114 0.886 41 H 0.177 0.823 42 H 0.178 0.822 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.372 9.538 15.528 20.492 hybrid contribution -0.065 1.645 -1.003 1.927 sum -9.438 11.182 14.525 20.617 Atomic orbital electron populations 1.21693 0.91073 1.02322 1.03495 1.22369 0.98126 0.98843 0.91655 0.88528 1.21623 0.88795 0.93131 0.95691 1.44739 1.32603 1.52161 1.05716 1.19961 1.02174 1.23644 1.02737 0.91563 1.27076 0.92650 1.07883 0.99613 1.70919 1.36268 1.07296 1.43100 0.82996 0.75191 0.72001 0.76774 1.19080 1.21151 1.21826 1.21559 0.95095 0.95714 0.85073 1.21932 0.95102 0.93671 0.85064 0.90272 1.45718 1.73586 1.10742 1.04990 1.20832 0.74705 0.88646 0.85012 1.90717 1.51075 1.17111 1.86530 1.21446 0.94406 0.98245 0.92864 0.81624 1.21823 0.90724 1.01061 0.94865 1.22764 0.97110 0.97869 0.95670 1.20704 0.90320 0.97447 1.00742 1.21299 1.01411 0.98141 0.95469 1.17631 0.84814 0.96108 0.95934 1.91484 1.56247 1.74975 1.89804 1.20221 0.91586 1.01891 1.01132 1.21155 0.95636 0.97430 0.97606 0.90369 0.90416 0.93205 0.95744 0.94617 0.93867 0.98249 0.98052 0.74654 0.83821 0.88635 0.82263 0.82173 0.84664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 9.17 71.98 0.66 -2.14 16 2 C -0.09 -2.74 3.15 -9.60 -0.03 -2.77 16 3 H 0.10 2.55 8.00 -2.39 -0.02 2.53 16 4 C 0.13 5.43 6.85 86.73 0.59 6.03 16 5 N -0.62 -33.51 3.33 -691.95 -2.30 -35.81 16 6 C -0.36 -21.41 9.97 84.03 0.84 -20.57 16 7 H 0.07 3.89 8.02 -2.91 -0.02 3.87 16 8 C -0.08 -4.61 4.95 84.86 0.42 -4.19 16 9 N -0.93 -61.17 12.87 21.65 0.28 -60.89 16 10 Si 1.11 54.43 30.03 68.60 2.06 56.49 16 11 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 12 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 13 H -0.29 -14.59 7.11 99.48 0.71 -13.88 16 14 C 0.15 7.79 5.03 86.85 0.44 8.23 16 15 C 0.15 5.47 2.76 46.38 0.13 5.60 16 16 H 0.08 3.21 7.64 -2.39 -0.02 3.19 16 17 N -0.70 -19.88 5.23 -435.95 -2.28 -22.16 16 18 C 0.52 15.71 7.33 87.66 0.64 16.35 16 19 O -0.58 -23.19 15.41 -3.04 -0.05 -23.24 16 20 C -0.05 -0.98 4.15 -14.65 -0.06 -1.04 16 21 H 0.17 1.78 8.14 -2.39 -0.02 1.76 16 22 C -0.05 -0.87 7.91 30.04 0.24 -0.63 16 23 C -0.13 -2.92 7.32 -21.76 -0.16 -3.08 16 24 C -0.07 -1.47 10.04 22.37 0.22 -1.25 16 25 C -0.14 -3.13 10.01 22.25 0.22 -2.91 16 26 C 0.07 1.97 7.31 22.36 0.16 2.13 16 27 F -0.15 -4.19 17.27 44.97 0.78 -3.41 16 28 C -0.13 -3.39 10.02 22.30 0.22 -3.17 16 29 C -0.12 -2.81 7.05 -19.82 -0.14 -2.95 16 30 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.05 1.20 8.08 -2.39 -0.02 1.18 16 33 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.04 1.43 7.78 -2.39 -0.02 1.41 16 35 H 0.25 16.76 6.45 -92.71 -0.60 16.16 16 36 H 0.00 -0.06 7.82 -2.39 -0.02 -0.08 16 37 H 0.00 0.10 7.02 -2.38 -0.02 0.08 16 38 H 0.42 8.62 8.52 -92.71 -0.79 7.83 16 39 H 0.14 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.10 2.22 7.02 -2.39 -0.02 2.20 16 41 H 0.16 2.14 8.06 -2.91 -0.02 2.11 16 42 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 43 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -83.24 359.70 3.30 -79.94 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 0.42 Total: 15.46 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: 4.40 Total: -6.38 kcal Atomic # 7 Polarization: -114.56 SS G_CDS: -4.30 Total: -118.86 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.05 Total: -23.24 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.78 Total: -3.41 kcal Atomic # 14 Polarization: 54.43 SS G_CDS: 2.06 Total: 56.49 kcal Total: -83.24 3.30 -79.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080335484.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.011 kcal (2) G-P(sol) polarization free energy of solvation -83.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds