Wall clock time and date at job start Tue Mar 31 2020 13:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 110.63530 * 2 1 4 4 C 1.54329 * 111.00320 * 236.92728 * 2 1 3 5 5 N 1.47026 * 107.26635 * 219.59930 * 4 2 1 6 6 C 1.34771 * 125.64543 * 178.84822 * 5 4 2 7 7 O 1.21278 * 120.00502 * 359.71117 * 6 5 4 8 8 C 1.50701 * 119.99536 * 179.71707 * 6 5 4 9 9 H 1.09003 * 113.23435 * 312.46772 * 8 6 5 10 10 C 1.52886 * 113.98696 * 180.02562 * 8 6 5 11 11 C 1.50766 * 89.76514 * 246.04978 * 10 8 6 12 12 C 1.38254 * 149.30266 * 179.97438 * 11 10 8 13 13 C 1.38142 * 120.15754 * 180.02562 * 12 11 10 14 14 C 1.38460 * 119.71976 * 0.27469 * 13 12 11 15 15 F 1.35106 * 119.93609 * 179.72305 * 14 13 12 16 16 C 1.38199 * 120.12748 * 359.41371 * 14 13 12 17 17 C 1.38377 * 90.24494 * 0.02562 * 11 10 8 18 18 C 1.47417 * 108.70002 * 358.58195 * 5 4 2 19 19 C 1.54907 * 104.83688 * 24.35939 * 18 5 4 20 20 H 1.08999 * 111.00570 * 81.05700 * 19 18 5 21 21 N 1.46497 * 111.00787 * 204.91635 * 19 18 5 22 22 C 1.36936 * 120.00025 * 273.54624 * 21 19 18 23 23 H 1.08004 * 119.99721 * 359.97438 * 22 21 19 24 24 C 1.38810 * 120.00275 * 180.02562 * 22 21 19 25 25 N 1.31625 * 119.99901 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 120.00234 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46868 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47274 * 119.99442 * 26 24 22 29 29 H 1.48501 * 109.46912 * 239.99581 * 26 24 22 30 30 H 1.09000 * 109.47215 * 296.85111 * 1 2 3 31 31 H 1.08989 * 109.47287 * 56.85728 * 1 2 3 32 32 H 1.09000 * 109.47014 * 176.86030 * 1 2 3 33 33 H 1.08993 * 109.99525 * 100.12285 * 4 2 1 34 34 H 1.09000 * 109.78061 * 338.95137 * 4 2 1 35 35 H 1.09000 * 113.16696 * 130.83454 * 10 8 6 36 36 H 1.08992 * 113.16752 * 1.27242 * 10 8 6 37 37 H 1.07994 * 119.92173 * 0.04637 * 12 11 10 38 38 H 1.08002 * 120.13606 * 179.97438 * 13 12 11 39 39 H 1.07997 * 119.85481 * 180.30028 * 16 14 13 40 40 H 1.09007 * 110.36891 * 143.19436 * 18 5 4 41 41 H 1.09000 * 110.37251 * 265.40916 * 18 5 4 42 42 H 0.97004 * 120.00071 * 93.54525 * 21 19 18 43 43 H 0.96995 * 119.99742 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0832 -0.7862 -1.2073 5 7 3.2495 -1.5469 -0.7354 6 6 4.0005 -2.3783 -1.4846 7 8 3.7297 -2.5524 -2.6538 8 6 5.1767 -3.0916 -0.8692 9 1 5.8213 -2.4341 -0.2859 10 6 5.9315 -3.9986 -1.8413 11 6 5.4976 -5.2030 -1.0449 12 6 5.5028 -6.5737 -0.8643 13 6 4.8240 -7.1361 0.1992 14 6 4.1334 -6.3218 1.0807 15 9 3.4633 -6.8677 2.1192 16 6 4.1334 -4.9511 0.9040 17 6 4.8138 -4.3823 -0.1652 18 6 3.4653 -1.2446 0.6912 19 6 2.0791 -0.7934 1.2151 20 1 1.4470 -1.6529 1.4382 21 7 2.2176 0.0727 2.3885 22 6 2.3130 -0.4781 3.6386 23 1 2.2858 -1.5510 3.7595 24 6 2.4437 0.3425 4.7505 25 7 2.4764 1.6501 4.6032 26 14 2.5732 -0.4088 6.4559 27 1 2.5107 -1.8888 6.3507 28 1 3.8623 -0.0102 7.0759 29 1 1.4489 0.0752 7.2967 30 1 -0.3634 0.4642 0.9169 31 1 -0.3633 0.5618 -0.8604 32 1 -0.3633 -1.0261 -0.0563 33 1 2.3848 -0.0960 -1.9950 34 1 1.3217 -1.4701 -1.5824 35 1 7.0098 -3.8404 -1.8260 36 1 5.5207 -3.9814 -2.8507 37 1 6.0391 -7.2061 -1.5562 38 1 4.8279 -8.2070 0.3397 39 1 3.5973 -4.3197 1.5970 40 1 3.7994 -2.1363 1.2217 41 1 4.1944 -0.4421 0.8030 42 1 2.2417 1.0363 2.2800 43 1 2.5681 2.2234 5.3802 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082706902.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:55 Heat of formation + Delta-G solvation = -2.882736 kcal Electronic energy + Delta-G solvation = -26665.693859 eV Core-core repulsion = 22819.762918 eV Total energy + Delta-G solvation = -3845.930941 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.95084 -41.17289 -39.35746 -37.60243 -35.12498 -34.14662 -32.57378 -31.00527 -30.75169 -28.05481 -27.56140 -26.60200 -24.72759 -23.98623 -22.61711 -21.64810 -20.78461 -19.93540 -18.97643 -17.58164 -17.23371 -17.14578 -16.63101 -16.05553 -15.68104 -15.36011 -15.23791 -14.87282 -14.35524 -14.04794 -13.73485 -13.70828 -13.24621 -13.17324 -13.12334 -13.02495 -12.69198 -12.39586 -12.08469 -11.96005 -11.79983 -11.71261 -11.29771 -11.15873 -11.06000 -10.84906 -10.75243 -10.65380 -10.27136 -10.00961 -9.97208 -9.78794 -9.11547 -9.05507 -8.61319 -8.43352 -7.14497 -5.90483 -3.21512 0.91178 1.03976 2.57665 3.06210 3.35956 3.39931 3.43419 3.44394 3.81299 4.00152 4.29924 4.37567 4.44901 4.60374 4.79242 4.97825 5.04714 5.07109 5.13850 5.17604 5.39518 5.47142 5.49306 5.56532 5.58968 5.69706 5.75570 5.76944 5.84939 5.87565 5.95102 5.96681 5.99378 6.15721 6.19061 6.30474 6.39703 6.43761 6.46412 6.56305 6.70612 6.80813 7.58851 7.67885 8.21325 8.27253 9.39400 9.92064 10.27149 11.31381 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.010381 B = 0.004513 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2696.473731 B = 6203.328141 C = 8008.587470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.113 4.113 3 H 0.085 0.915 4 C 0.117 3.883 5 N -0.607 5.607 6 C 0.545 3.455 7 O -0.546 6.546 8 C -0.067 4.067 9 H 0.128 0.872 10 C -0.052 4.052 11 C -0.130 4.130 12 C -0.066 4.066 13 C -0.146 4.146 14 C 0.099 3.901 15 F -0.137 7.137 16 C -0.122 4.122 17 C -0.089 4.089 18 C 0.069 3.931 19 C 0.178 3.822 20 H 0.065 0.935 21 N -0.710 5.710 22 C -0.248 4.248 23 H 0.072 0.928 24 C -0.006 4.006 25 N -0.928 5.928 26 Si 0.905 3.095 27 H -0.279 1.279 28 H -0.290 1.290 29 H -0.290 1.290 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.097 0.903 36 H 0.109 0.891 37 H 0.131 0.869 38 H 0.140 0.860 39 H 0.137 0.863 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.387 0.613 43 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.130 -11.640 -12.208 17.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.133 4.133 3 H 0.103 0.897 4 C -0.006 4.006 5 N -0.339 5.339 6 C 0.333 3.667 7 O -0.425 6.425 8 C -0.088 4.088 9 H 0.145 0.855 10 C -0.089 4.089 11 C -0.130 4.130 12 C -0.084 4.084 13 C -0.165 4.165 14 C 0.080 3.920 15 F -0.115 7.115 16 C -0.141 4.141 17 C -0.089 4.089 18 C -0.056 4.056 19 C 0.065 3.935 20 H 0.083 0.917 21 N -0.350 5.350 22 C -0.379 4.379 23 H 0.090 0.910 24 C -0.203 4.203 25 N -0.576 5.576 26 Si 0.736 3.264 27 H -0.204 1.204 28 H -0.217 1.217 29 H -0.217 1.217 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.115 0.885 36 H 0.127 0.873 37 H 0.149 0.851 38 H 0.158 0.842 39 H 0.155 0.845 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.222 0.778 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.978 -11.888 -12.625 18.042 hybrid contribution 0.020 -0.099 1.459 1.462 sum 4.998 -11.987 -11.166 17.128 Atomic orbital electron populations 1.21663 0.93840 1.01594 1.02104 1.22484 0.96524 0.99858 0.94449 0.89685 1.22000 0.87379 0.94353 0.96894 1.48469 1.29584 1.43400 1.12486 1.19484 0.82915 0.78660 0.85671 1.90665 1.71022 1.64416 1.16369 1.21372 0.96287 0.94207 0.96890 0.85455 1.21479 1.00670 0.87401 0.99363 1.21764 0.99231 0.93603 0.98390 1.19948 0.98848 0.92583 0.97068 1.21027 0.99635 1.00333 0.95496 1.17328 0.96323 0.91171 0.87197 1.91525 1.78259 1.85909 1.55832 1.20601 1.01212 0.93189 0.99096 1.21596 0.97476 0.95316 0.94549 1.23597 1.02834 1.00846 0.78355 1.21343 0.91626 0.93763 0.86732 0.91729 1.42297 1.86891 1.05125 1.00666 1.19259 1.43191 0.91901 0.83575 0.90978 1.24746 1.02228 0.95315 0.97974 1.69665 1.56498 1.02042 1.29347 0.86153 0.77338 0.78311 0.84594 1.20408 1.21733 1.21723 0.91271 0.93126 0.92896 0.91776 0.91588 0.88489 0.87326 0.85097 0.84224 0.84490 0.91254 0.90929 0.77803 0.93353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 9.17 37.16 0.34 -1.52 16 2 C -0.11 -1.72 3.15 -88.78 -0.28 -2.00 16 3 H 0.08 1.32 8.00 -51.93 -0.42 0.90 16 4 C 0.12 1.70 6.48 -3.06 -0.02 1.68 16 5 N -0.61 -9.32 3.33 -170.52 -0.57 -9.88 16 6 C 0.55 8.39 7.41 -10.99 -0.08 8.31 16 7 O -0.55 -9.73 16.05 5.56 0.09 -9.64 16 8 C -0.07 -0.83 3.43 -92.62 -0.32 -1.15 16 9 H 0.13 1.40 8.07 -51.93 -0.42 0.98 16 10 C -0.05 -0.55 7.54 -31.53 -0.24 -0.79 16 11 C -0.13 -1.50 7.59 -104.53 -0.79 -2.30 16 12 C -0.07 -0.67 10.03 -39.61 -0.40 -1.07 16 13 C -0.15 -1.55 10.04 -39.53 -0.40 -1.95 16 14 C 0.10 1.29 7.29 -39.51 -0.29 1.00 16 15 F -0.14 -1.91 17.26 2.25 0.04 -1.87 16 16 C -0.12 -1.69 9.91 -39.34 -0.39 -2.08 16 17 C -0.09 -1.17 6.57 -107.58 -0.71 -1.87 16 18 C 0.07 1.13 6.33 -2.53 -0.02 1.12 16 19 C 0.18 3.21 3.13 -65.78 -0.21 3.00 16 20 H 0.06 1.22 8.04 -51.93 -0.42 0.80 16 21 N -0.71 -16.10 5.28 -51.35 -0.27 -16.37 16 22 C -0.25 -6.37 9.98 -15.06 -0.15 -6.52 16 23 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 24 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 25 N -0.93 -26.48 13.06 55.49 0.72 -25.75 16 26 Si 0.91 21.42 29.55 -169.99 -5.02 16.40 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 29 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.05 0.60 8.14 -51.94 -0.42 0.18 16 32 H 0.05 0.70 8.08 -51.93 -0.42 0.28 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.95 7.78 -51.93 -0.40 0.55 16 35 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.11 1.24 7.04 -51.93 -0.37 0.88 16 37 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 38 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.14 1.94 7.42 -52.49 -0.39 1.55 16 40 H 0.07 1.12 6.70 -51.92 -0.35 0.77 16 41 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.39 9.40 7.71 -40.82 -0.31 9.08 16 43 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 LS Contribution 361.22 15.07 5.44 5.44 Total: -1.00 -29.91 361.22 -9.60 -39.52 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -6.00 Total: 8.55 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -4.04 Total: -6.40 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: -0.11 Total: -52.00 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.09 Total: -9.64 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.91 -9.60 -39.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082706902.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.633 kcal (2) G-P(sol) polarization free energy of solvation -29.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds